Rroxscaffold_6G00420700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000954
Physical Location & Seq
Reverse (-)
41874983 .. 41876507
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420700.1

Sequence Viewer

Length: 312 bp
ATGTTGAAAGTAAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGATCTATTTGGCCAGCTGCTCACCTCCAAGAACCAACCAAATCCCAATTCTGACGAAGCACAAGTGCAGGTGATAGGATTAGAAAAATCTTCTATTAAAGCTAAGTCTTCGGGCGCCATTCCATATACAGAATGCATCAAAGTCTGCAAAATTTGTGCTTGTACACAAATGTGGCCCCCTGAGGCAAATTGGTGCATTGATTGCCGCGAGACTGAAGCTGAAGGCAGAACCCTCCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.24

Weight (kDa)

6.54

Isoelectric Point (pI)

25.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 182
AccII CGCG 1 cut(s) 276
AciI CCGC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 2 cut(s) 303, 309
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 7
AhlI ACTAGT 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AleI CACNNNNGTG 1 cut(s) 238
AluBI AGCT 3 cut(s) 85, 170, 287
AluI AGCT 3 cut(s) 85, 170, 287
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 2 cut(s) 79, 242
ApeKI GCWGC 2 cut(s) 44, 85
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 82, 151
AxyI CCTNAGG 1 cut(s) 249
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 56, 72
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 310
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 45, 86, 274
BlsI GCNGC 3 cut(s) 46, 87, 275
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 184, 245
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 56, 72
BsgI GTGCAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 81, 244
BshNI GGYRCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 2 cut(s) 81, 244
Bsp1286I GDGCHC 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 230
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 274
BspANI GGCC 2 cut(s) 81, 244
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 184, 245
BspMI ACCTGC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 2 cut(s) 53, 270
BstAUI TGTACA 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 30, 64, 83
BstDEI CTNAG 3 cut(s) 67, 171, 249
BstDSI CCRYGG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 270
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 56, 72
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 81, 244
BtgI CCRYGG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 30, 64, 83
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 34, 59
CviJI RGCY 6 cut(s) 38, 81, 85, 170, 244, 287
CviKI_1 RGCY 6 cut(s) 38, 81, 85, 170, 244, 287
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 3 cut(s) 67, 171, 249
DinI GGCGCC 1 cut(s) 184
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 303, 309
Eco81I CCTNAGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 206
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 62
FaiI YATR 4 cut(s) 35, 60, 193, 195
FatI CATG 2 cut(s) 33, 58
Fnu4HI GCNGC 3 cut(s) 45, 86, 274
Fsp4HI GCNGC 3 cut(s) 45, 86, 274
FspBI CTAG 2 cut(s) 51, 310
GlaI GCGC 1 cut(s) 184
GluI GCNGC 3 cut(s) 45, 86, 274
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 81, 244
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 37, 62
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HphI GGTGA 2 cut(s) 82, 151
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 136, 204, 216, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 270
HpyF3I CTNAG 3 cut(s) 67, 171, 249
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 37, 62
HspAI GCGC 1 cut(s) 183
KasI GGCGCC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 95, 122, 261
Lsp1109I GCAGC 2 cut(s) 56, 72
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 51, 310
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 150, 168
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 3 cut(s) 115, 219, 256
MluNI TGGCCA 1 cut(s) 81
Mly113I GGCGCC 1 cut(s) 183
MnlI CCTC 3 cut(s) 103, 244, 311
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 206
MscI TGGCCA 1 cut(s) 81
MseI TTAA 2 cut(s) 20, 165
MslI CAYNNNNRTG 1 cut(s) 238
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 206
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 270
NarI GGCGCC 1 cut(s) 183
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 37, 62
NlaIV GGNNCC 2 cut(s) 184, 245
NsiI ATGCAT 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 127
PctI GAATGC 1 cut(s) 206
PkrI GCNGC 3 cut(s) 46, 87, 275
PluTI GGCGCC 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 184, 245
PspPI GGNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 238
SaqAI TTAA 2 cut(s) 20, 165
SatI GCNGC 3 cut(s) 45, 86, 274
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 58
SetI ASST 5 cut(s) 87, 95, 141, 172, 289
SfaNI GCATC 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 238
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 3 cut(s) 115, 219, 256
SsiI CCGC 1 cut(s) 274
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 2 cut(s) 51, 310
StyI CCWWGG 1 cut(s) 33
TasI AATT 3 cut(s) 115, 219, 256
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 20, 165
Tru9I TTAA 2 cut(s) 20, 165
TseI GCWGC 2 cut(s) 44, 85
XapI RAATTY 1 cut(s) 219
XspI CTAG 2 cut(s) 51, 310
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.