RchiOBHm_Chr3g0458971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000954
Physical Location & Seq
Forward (+)
7531705 .. 7534315
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42558

Sequence Viewer

Length: 1011 bp
ATGAGTTTCAGAAGTATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCGTGACATTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCTAAGAACCAGCCAGAACCTAATTCGGAATGCCAGAAAATTCCATTTCTATTGTGCGACCGTATCTGTGACGCTTGCGTTTGCGATAGGCGTGTGCCACAAGCTGCAGAGTGCTTTTGCGGAAAGTGGAAACCATTTGCAGAACTCCAGAAATATGATGGGGCACAAGTGCAGGTGATAGAAAAAGAAAAATCAAATATTGCAGTTGAGTCTTCAGGCGCCATTCCATATACAGAATGCATAAAAACTTGCGACAAATGTTTTTGTACACAAAAGTGGCCCCCTGAGAGCAATGTGTGCATTTGCGGAGACAACAACAAGTCCAAGAAGCCAGTTGTTTTGGTTCAAGAAGAGAAACTGATTAGCAGCAAACTGAAATCAGTGACGATGCCATATTCAGAATGCCAGAAAACCTGCACGCATGTTTGCGCTTGTACAGCAATTTGGCCACCTGAACTAGCAATCTGCGTTTGTGGTGACCCCATCAAATCAGTAACCACTAAAGCGGCCGAAGAATTGCATAAAGAACTCGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGACGAGTGCGTAATTTGCACTTTGCCTTATCCAATTGAGTTTGCATTATGCTATTGTGGTAAAAAGACTGATTCTGACTCCAAGAAACCAGCAATCGAATATGCGGAAAAATTGCTTACAGAATTACACGTAGCCAAACCAGTTGCAAAATCAGTGGGTGGCTTTATTCCATATCCGGAATGCATAGAGAAATGTGATGAGTGTGTAATTTGCACTAAACCTCTTCCAATTGAGGCTGCATTATGCTATTGCGGTAAGAAGACCGAATCTGAAGGCAGAGCCCTCCCCCGTCTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

37.01

Weight (kDa)

6.83

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 2 cut(s) 271, 530
AccB1I GGYRCC 1 cut(s) 326
AccIII TCCGGA 2 cut(s) 691, 886
AciI CCGC 5 cut(s) 228, 414, 614, 815, 963
AcoI YGGCCR 3 cut(s) 94, 554, 615
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 306, 1002
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 376, 544
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 3 cut(s) 22, 455, 704
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 3 cut(s) 100, 212, 1007
AluI AGCT 3 cut(s) 100, 212, 1007
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 411, 652
Aor13HI TCCGGA 2 cut(s) 691, 886
AoxI GGCC 4 cut(s) 94, 386, 554, 615
ApeKI GCWGC 4 cut(s) 59, 212, 474, 947
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 2 cut(s) 329, 539
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 295, 596
BaeGI GKGCMC 1 cut(s) 274
BalI TGGCCA 2 cut(s) 96, 556
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 994
BbsI GAAGAC 2 cut(s) 312, 977
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 71, 199, 486, 934
BccI CCATC 2 cut(s) 260, 599
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 411, 652
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 3 cut(s) 66, 566, 1004
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 330
BfuAI ACCTGC 2 cut(s) 271, 530
BisI GCNGC 5 cut(s) 60, 213, 475, 615, 948
BlsI GCNGC 5 cut(s) 61, 214, 476, 616, 949
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 328, 389
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 2 cut(s) 312, 977
BpmI CTGGAG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 841
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 652
BsaWI WCCGGW 2 cut(s) 691, 886
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse1I ACTGG 3 cut(s) 440, 656, 851
Bse3DI GCAATG 1 cut(s) 406
BseAI TCCGGA 2 cut(s) 691, 886
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 3 cut(s) 440, 656, 851
BseSI GKGCMC 1 cut(s) 274
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 4 cut(s) 71, 199, 486, 934
BsgI GTGCAG 2 cut(s) 299, 508
Bsh1285I CGRYCG 2 cut(s) 169, 618
BshFI GGCC 4 cut(s) 96, 388, 556, 617
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 2 cut(s) 169, 618
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 692, 887
BsmAI GTCTC 2 cut(s) 411, 652
BsmI GAATGC 5 cut(s) 143, 350, 515, 701, 896
BsnI GGCC 4 cut(s) 96, 388, 556, 617
Bso31I GGTCTC 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 73, 274, 994
Bsp13I TCCGGA 2 cut(s) 691, 886
Bsp1407I TGTACA 2 cut(s) 374, 542
BspACI CCGC 5 cut(s) 228, 414, 614, 815, 963
BspANI GGCC 4 cut(s) 96, 388, 556, 617
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 2 cut(s) 691, 886
BspLI GGNNCC 2 cut(s) 328, 389
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 2 cut(s) 271, 530
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 2 cut(s) 374, 542
BsrI ACTGG 3 cut(s) 440, 656, 851
BssNI GRCGYC 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 453, 939
BstACI GRCGYC 1 cut(s) 327
BstAPI GCANNNNNTGC 2 cut(s) 68, 405
BstAUI TGTACA 2 cut(s) 374, 542
BstBAI YACGTR 1 cut(s) 841
BstC8I GCNNGC 5 cut(s) 45, 79, 98, 184, 527
BstDEI CTNAG 4 cut(s) 82, 111, 393, 1008
BstEII GGTNACC 1 cut(s) 584
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 2 cut(s) 329, 539
BstMAI GTCTC 2 cut(s) 411, 652
BstMCI CGRYCG 2 cut(s) 169, 618
BstMWI GCNNNNNNNGC 4 cut(s) 68, 405, 545, 726
BstNSI RCATGY 1 cut(s) 533
BstPI GGTNACC 1 cut(s) 584
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 4 cut(s) 71, 199, 486, 934
BstV2I GAAGAC 2 cut(s) 312, 977
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 4 cut(s) 96, 388, 556, 617
BtsIMutI CAGTG 3 cut(s) 495, 675, 870
BveI ACCTGC 2 cut(s) 271, 530
Cac8I GCNNGC 5 cut(s) 45, 79, 98, 184, 527
CfoI GCGC 2 cut(s) 329, 539
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 375, 543
CspCI CAANNNNNGTGG 4 cut(s) 651, 686, 846, 881
CviAII CATG 2 cut(s) 74, 530
CviQI GTAC 2 cut(s) 375, 543
DdeI CTNAG 4 cut(s) 82, 111, 393, 1008
DinI GGCGCC 1 cut(s) 328
EaeI YGGCCR 3 cut(s) 94, 554, 615
EagI CGGCCG 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 453, 939
EarI CTCTTC 2 cut(s) 453, 939
EclXI CGGCCG 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 994
Eco31I GGTCTC 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 306, 1002
Eco91I GGTNACC 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 584
EcoT22I ATGCAT 3 cut(s) 350, 701, 896
EcoT38I GRGCYC 1 cut(s) 994
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
FaeI CATG 2 cut(s) 77, 533
FatI CATG 2 cut(s) 73, 529
Fnu4HI GCNGC 5 cut(s) 60, 213, 475, 615, 948
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 5 cut(s) 60, 213, 475, 615, 948
FspBI CTAG 3 cut(s) 66, 566, 1004
GlaI GCGC 2 cut(s) 328, 538
GluI GCNGC 5 cut(s) 60, 213, 475, 615, 948
GsuI CTGGAG 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 4 cut(s) 96, 388, 556, 617
HapII CCGG 2 cut(s) 692, 887
HgaI GACGC 1 cut(s) 188
HhaI GCGC 2 cut(s) 329, 539
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 2 cut(s) 77, 533
Hin6I GCGC 2 cut(s) 327, 537
HinP1I GCGC 2 cut(s) 327, 537
HinfI GANTC 4 cut(s) 317, 782, 788, 977
HpaII CCGG 2 cut(s) 692, 887
HphI GGTGA 2 cut(s) 295, 596
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 5 cut(s) 11, 136, 508, 787, 982
Hpy188III TCNNGA 4 cut(s) 256, 455, 692, 887
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 977
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 840
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 405, 545, 726
HpyF3I CTNAG 4 cut(s) 82, 111, 393, 1008
HpySE526I ACGT 1 cut(s) 840
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 2 cut(s) 77, 533
HspAI GCGC 2 cut(s) 327, 537
KasI GGCGCC 1 cut(s) 326
Kpn2I TCCGGA 2 cut(s) 691, 886
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 4 cut(s) 71, 199, 486, 934
LweI GCATC 1 cut(s) 486
MaeI CTAG 3 cut(s) 66, 566, 1004
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 6 cut(s) 49, 176, 490, 584, 601, 710
MboII GAAGA 5 cut(s) 312, 470, 632, 926, 982
MfeI CAATTG 2 cut(s) 744, 939
MhlI GDGCHC 3 cut(s) 73, 274, 994
MlsI TGGCCA 2 cut(s) 96, 556
MluNI TGGCCA 2 cut(s) 96, 556
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 2 cut(s) 326, 782
MnlI CCTC 5 cut(s) 118, 668, 937, 942, 1004
Mox20I TGGCCA 2 cut(s) 96, 556
Mph1103I ATGCAT 3 cut(s) 350, 701, 896
MroI TCCGGA 2 cut(s) 691, 886
MscI TGGCCA 2 cut(s) 96, 556
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 2 cut(s) 96, 556
MspI CCGG 2 cut(s) 692, 887
MunI CAATTG 2 cut(s) 744, 939
Mva1269I GAATGC 5 cut(s) 143, 350, 515, 701, 896
MwoI GCNNNNNNNGC 4 cut(s) 68, 405, 545, 726
NarI GGCGCC 1 cut(s) 327
NlaIII CATG 2 cut(s) 77, 533
NlaIV GGNNCC 2 cut(s) 328, 389
NmuCI GTSAC 5 cut(s) 49, 176, 490, 584, 710
NsiI ATGCAT 3 cut(s) 350, 701, 896
NspI RCATGY 1 cut(s) 533
OliI CACNNNNGTG 1 cut(s) 382
PaqCI CACCTGC 1 cut(s) 271
PctI GAATGC 5 cut(s) 143, 350, 515, 701, 896
PfeI GAWTC 2 cut(s) 782, 977
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 61, 214, 476, 616, 949
PleI GAGTC 2 cut(s) 325, 782
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 2 cut(s) 325, 782
Ppu21I YACGTR 1 cut(s) 841
PspEI GGTNACC 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 328, 389
PspPI GGNCC 1 cut(s) 387
PstI CTGCAG 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 2 cut(s) 376, 544
RsaNI GTAC 2 cut(s) 375, 543
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 5 cut(s) 60, 213, 475, 615, 948
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 2 cut(s) 326, 782
SduI GDGCHC 3 cut(s) 73, 274, 994
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 65
SsiI CCGC 5 cut(s) 228, 414, 614, 815, 963
SspDI GGCGCC 1 cut(s) 326
SspI AATATT 1 cut(s) 307
SspMI CTAG 3 cut(s) 66, 566, 1004
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 843
TaqI TCGA 2 cut(s) 639, 807
TaqII GACCGA 1 cut(s) 989
TatI WGTACW 2 cut(s) 374, 542
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 2 cut(s) 782, 977
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 3 cut(s) 495, 675, 870
TseFI GTSAC 5 cut(s) 49, 176, 490, 584, 710
TseI GCWGC 4 cut(s) 59, 212, 474, 947
Tsp45I GTSAC 5 cut(s) 49, 176, 490, 584, 710
TspRI CASTG 3 cut(s) 495, 675, 870
Tth111I GACNNNGTC 1 cut(s) 644
XapI RAATTY 1 cut(s) 147
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XspI CTAG 3 cut(s) 66, 566, 1004
Zsp2I ATGCAT 3 cut(s) 350, 701, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.