Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004868.1

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Reverse (-)

3708 .. 5817

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004868.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgttgcttgccgtgacattggcagcaactagtgctcatgctcgcttagacctatttggccagctccttacctccaagaaccagccagaccctaattcggaatgccagaaaattccatttctattgtgcgaccgtatctgtgacgcttgcgtttgcgataggcgtgtgccacaagctgcagagtgcttttgcggaaagtggaaaccatttgcagaactccagaaatatgatggggcacaagtgcaggtgatagaaaaagaaaaatcaaatattgcagttgagtcttcaggcgccattccatatacagaatgcataaaaacttgcgacaaatgtttttgtacacaaaagtggccccctgagagcaatgtgtgcatttgcggagacaacaagaagtccaagaagccagttgttttggttcaagaagagaaactgattagcagcaaactgaaatcagtgacgatgccatattcagaatgccagaaaacctgcacgcatgtttgcgcttgtacagcaatttggccacctgaactagcaatctgcgtttgtggtgaccccatcaaatcagtaaccactaaagcggccgaagaattgcataaagaactcgacttggtctccaagccagttgcaaaatcagtgggaggctttattccatatccggaatgcattgaaaaatgtgacgagtgcgtaatttgcactttgccttatccaattgagtttgcattatgctattgtggtaaaaagactgattctgactccaagaaaccagcaatcgaatatgcggaaaaattgcttacagaattacacgtagccaaaccagttgcaaaatcagtgggtggctttattccatatccggaatgcatagagaaatgtgatgagtgtgtaatttgcactaaacctcttccaattgaggctgcattatgctattgcggtaagaagaccgaatctgaaggcagagccctcccccgtctagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

35.58

Weight (kDa)

6.46

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	2 cut(s)	235, 494
AccB1I	GGYRCC	1 cut(s)	290
AccIII	TCCGGA	2 cut(s)	655, 850
AciI	CCGC	5 cut(s)	192, 378, 578, 779, 927
AcoI	YGGCCR	3 cut(s)	58, 518, 579
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	270, 966
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	340, 508
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	802
AgsI	TTSAA	2 cut(s)	419, 668
AhlI	ACTAGT	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	346
AluBI	AGCT	3 cut(s)	64, 176, 971
AluI	AGCT	3 cut(s)	64, 176, 971
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	375, 616
Aor13HI	TCCGGA	2 cut(s)	655, 850
AoxI	GGCC	4 cut(s)	58, 350, 518, 579
ApeKI	GCWGC	4 cut(s)	23, 176, 438, 911
ApoI	RAATTY	1 cut(s)	111
AspLEI	GCGC	2 cut(s)	293, 503
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	259, 560
BaeGI	GKGCMC	1 cut(s)	238
BalI	TGGCCA	2 cut(s)	60, 520
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	958
BbsI	GAAGAC	2 cut(s)	276, 941
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	35, 163, 450, 898
BccI	CCATC	2 cut(s)	224, 563
BcoDI	GTCTC	2 cut(s)	375, 616
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	3 cut(s)	30, 530, 968
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	294
BfuAI	ACCTGC	2 cut(s)	235, 494
BisI	GCNGC	5 cut(s)	24, 177, 439, 579, 912
BlsI	GCNGC	5 cut(s)	25, 178, 440, 580, 913
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	292, 353
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	276, 941
BpmI	CTGGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	805
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	616
BsaWI	WCCGGW	2 cut(s)	655, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	404, 620, 815
Bse3DI	GCAATG	1 cut(s)	370
BseAI	TCCGGA	2 cut(s)	655, 850
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	404, 620, 815
BseSI	GKGCMC	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	579
BseXI	GCAGC	4 cut(s)	35, 163, 450, 898
BsgI	GTGCAG	2 cut(s)	263, 472
Bsh1285I	CGRYCG	2 cut(s)	133, 582
BshFI	GGCC	4 cut(s)	60, 352, 520, 581
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	2 cut(s)	133, 582
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	656, 851
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	375, 616
BsmI	GAATGC	5 cut(s)	107, 314, 479, 665, 860
BsnI	GGCC	4 cut(s)	60, 352, 520, 581
Bso31I	GGTCTC	1 cut(s)	616
Bsp1286I	GDGCHC	3 cut(s)	37, 238, 958
Bsp13I	TCCGGA	2 cut(s)	655, 850
Bsp1407I	TGTACA	2 cut(s)	338, 506
BspACI	CCGC	5 cut(s)	192, 378, 578, 779, 927
BspANI	GGCC	4 cut(s)	60, 352, 520, 581
BspCNI	CTCAG	1 cut(s)	349
BspEI	TCCGGA	2 cut(s)	655, 850
BspLI	GGNNCC	2 cut(s)	292, 353
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	2 cut(s)	235, 494
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	2 cut(s)	338, 506
BsrI	ACTGG	3 cut(s)	404, 620, 815
BssNI	GRCGYC	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	417, 903
BstACI	GRCGYC	1 cut(s)	291
BstAPI	GCANNNNNTGC	2 cut(s)	32, 369
BstAUI	TGTACA	2 cut(s)	338, 506
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	5 cut(s)	9, 43, 62, 148, 491
BstDEI	CTNAG	3 cut(s)	46, 357, 972
BstEII	GGTNACC	1 cut(s)	548
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	293, 503
BstMAI	GTCTC	2 cut(s)	375, 616
BstMCI	CGRYCG	2 cut(s)	133, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 369, 509, 690
BstNSI	RCATGY	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	4 cut(s)	35, 163, 450, 898
BstV2I	GAAGAC	2 cut(s)	276, 941
BstZI	CGGCCG	1 cut(s)	579
BsuRI	GGCC	4 cut(s)	60, 352, 520, 581
BtsIMutI	CAGTG	3 cut(s)	459, 639, 834
BveI	ACCTGC	2 cut(s)	235, 494
Cac8I	GCNNGC	5 cut(s)	9, 43, 62, 148, 491
CfoI	GCGC	2 cut(s)	293, 503
Cfr13I	GGNCC	1 cut(s)	351
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	339, 507
CspCI	CAANNNNNGTGG	4 cut(s)	615, 650, 810, 845
CviAII	CATG	2 cut(s)	38, 494
CviQI	GTAC	2 cut(s)	339, 507
DdeI	CTNAG	3 cut(s)	46, 357, 972
DinI	GGCGCC	1 cut(s)	292
EaeI	YGGCCR	3 cut(s)	58, 518, 579
EagI	CGGCCG	1 cut(s)	579
Eam1104I	CTCTTC	2 cut(s)	417, 903
EarI	CTCTTC	2 cut(s)	417, 903
EclXI	CGGCCG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	958
Eco31I	GGTCTC	1 cut(s)	616
Eco52I	CGGCCG	1 cut(s)	579
Eco57I	CTGAAG	2 cut(s)	270, 966
Eco91I	GGTNACC	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	548
EcoT22I	ATGCAT	3 cut(s)	314, 665, 860
EcoT38I	GRGCYC	1 cut(s)	958
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
FaeI	CATG	2 cut(s)	41, 497
FatI	CATG	2 cut(s)	37, 493
Fnu4HI	GCNGC	5 cut(s)	24, 177, 439, 579, 912
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	5 cut(s)	24, 177, 439, 579, 912
FspBI	CTAG	3 cut(s)	30, 530, 968
GlaI	GCGC	2 cut(s)	292, 502
GluI	GCNGC	5 cut(s)	24, 177, 439, 579, 912
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	4 cut(s)	60, 352, 520, 581
HapII	CCGG	2 cut(s)	656, 851
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	293, 503
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	41, 497
Hin6I	GCGC	2 cut(s)	291, 501
HinP1I	GCGC	2 cut(s)	291, 501
HinfI	GANTC	4 cut(s)	281, 746, 752, 941
HpaII	CCGG	2 cut(s)	656, 851
HphI	GGTGA	2 cut(s)	259, 560
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	4 cut(s)	100, 472, 751, 946
Hpy188III	TCNNGA	4 cut(s)	220, 419, 656, 851
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	941
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 369, 509, 690
HpyF3I	CTNAG	3 cut(s)	46, 357, 972
HpySE526I	ACGT	1 cut(s)	804
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	41, 497
HspAI	GCGC	2 cut(s)	291, 501
KasI	GGCGCC	1 cut(s)	290
Kpn2I	TCCGGA	2 cut(s)	655, 850
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	4 cut(s)	35, 163, 450, 898
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	3 cut(s)	30, 530, 968
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	6 cut(s)	13, 140, 454, 548, 565, 674
MboII	GAAGA	5 cut(s)	276, 434, 596, 890, 946
MfeI	CAATTG	2 cut(s)	708, 903
MhlI	GDGCHC	3 cut(s)	37, 238, 958
MlsI	TGGCCA	2 cut(s)	60, 520
MluNI	TGGCCA	2 cut(s)	60, 520
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	290, 746
MnlI	CCTC	5 cut(s)	82, 632, 901, 906, 968
Mox20I	TGGCCA	2 cut(s)	60, 520
Mph1103I	ATGCAT	3 cut(s)	314, 665, 860
MroI	TCCGGA	2 cut(s)	655, 850
MscI	TGGCCA	2 cut(s)	60, 520
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	2 cut(s)	60, 520
MspI	CCGG	2 cut(s)	656, 851
MunI	CAATTG	2 cut(s)	708, 903
Mva1269I	GAATGC	5 cut(s)	107, 314, 479, 665, 860
MwoI	GCNNNNNNNGC	4 cut(s)	32, 369, 509, 690
NarI	GGCGCC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	41, 497
NlaIV	GGNNCC	2 cut(s)	292, 353
NmuCI	GTSAC	5 cut(s)	13, 140, 454, 548, 674
NsiI	ATGCAT	3 cut(s)	314, 665, 860
NspI	RCATGY	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	235
PctI	GAATGC	5 cut(s)	107, 314, 479, 665, 860
PfeI	GAWTC	2 cut(s)	746, 941
PflFI	GACNNNGTC	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	25, 178, 440, 580, 913
PleI	GAGTC	2 cut(s)	289, 746
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	289, 746
Ppu21I	YACGTR	1 cut(s)	805
PspEI	GGTNACC	1 cut(s)	548
PspN4I	GGNNCC	2 cut(s)	292, 353
PspPI	GGNCC	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	608
RsaI	GTAC	2 cut(s)	340, 508
RsaNI	GTAC	2 cut(s)	339, 507
RseI	CAYNNNNRTG	1 cut(s)	346
SatI	GCNGC	5 cut(s)	24, 177, 439, 579, 912
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	2 cut(s)	290, 746
SduI	GDGCHC	3 cut(s)	37, 238, 958
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	1 cut(s)	177
SfoI	GGCGCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	346
SpeI	ACTAGT	1 cut(s)	29
SsiI	CCGC	5 cut(s)	192, 378, 578, 779, 927
SspDI	GGCGCC	1 cut(s)	290
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	3 cut(s)	30, 530, 968
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	2 cut(s)	603, 771
TaqII	GACCGA	1 cut(s)	953
TatI	WGTACW	2 cut(s)	338, 506
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	746, 941
TscAI	CASTG	3 cut(s)	459, 639, 834
TseFI	GTSAC	5 cut(s)	13, 140, 454, 548, 674
TseI	GCWGC	4 cut(s)	23, 176, 438, 911
Tsp45I	GTSAC	5 cut(s)	13, 140, 454, 548, 674
TspRI	CASTG	3 cut(s)	459, 639, 834
Tth111I	GACNNNGTC	1 cut(s)	608
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	30, 530, 968
Zsp2I	ATGCAT	3 cut(s)	314, 665, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.