Rroxscaffold_6G00420640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000954
Physical Location & Seq
Reverse (-)
41823291 .. 41825777
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420640.1

Sequence Viewer

Length: 1011 bp
ATGAGTTTCAGAAGTATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGACATTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCCAAGAACCAGCCAGACCCTAATTCGGAATGCCAGAAAATTCCATATCTATTGTGCGGCCGTATCTGTGACGCTTGCGTTTGCGATAGGCGTGTGCCACAAGCTGCAGAGTGCGTTTGCGGAAAGTGGAAACCATATGCAGAACTCCAGAAATATGACGGAGAACAAGTGCAGGTGATAGAAAAAGAAAATTCAAATATTGCAATTGAGTCTTCAGGCACCATTCCATATACAGAATGCATCAAAACTTGCGATAAATGTTTTTGTACACTAAAGTGGCCCCCTGAGAGCAATGTGTGCTTTTGCGGAGACGACATGTCCAAGAAGTCCAAGAAGCCAGTTGTTTTAGTCCAAGAAGAGAAACTGATTAGCAGCAAAGTGAAATCAGAGACGATGCCATATTCAGAATGCCAGAAAACCTGCACGCATGTTTGCGCTTGTACAGCAATTTGGCCACCTGAACTATCAATCTGCGTTTGTGGTGACCCCATCAAATCAGTAACCACTAAAGCAGCCGAAGAATTGCATAAAGAACTCGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGACGAGTGCGTAATTTGCACTTTACCTTATCCAATTGAGCTTGCATTATGTTATTGTGGTAAAAAGACTGATTCTGACTCCAAGAAACCAGCAATCGAATATGCGGAAAAATTACTTACAGAATTACACGTAGCCAAACCAGTTGCAAAATCAGTGGGTGGCTTTATTCCATATCCGGAATGCATAGAGAAATGTGATGAGTGTGTAATTTGCACTAAACCTTATCCAATTGAGAAAGCATTGTGCTATTGCGGTAAGAAGACCGAATCTAACGCCAGAGCCCTCCCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

37.17

Weight (kDa)

6.46

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 2 cut(s) 271, 536
AccB1I GGYRCC 1 cut(s) 326
AccIII TCCGGA 2 cut(s) 697, 892
AciI CCGC 5 cut(s) 165, 228, 414, 821, 969
AcoI YGGCCR 3 cut(s) 94, 166, 560
AcsI RAATTY 2 cut(s) 147, 298
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 376, 550
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 2 cut(s) 423, 844
AgsI TTSAA 3 cut(s) 22, 303, 710
AhdI GACNNNNNGTC 1 cut(s) 424
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 3 cut(s) 100, 212, 757
AluI AGCT 3 cut(s) 100, 212, 757
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 411, 491, 658
Aor13HI TCCGGA 2 cut(s) 697, 892
AoxI GGCC 4 cut(s) 94, 166, 386, 560
ApeKI GCWGC 4 cut(s) 59, 212, 480, 620
ApoI RAATTY 2 cut(s) 147, 298
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 295, 602
BalI TGGCCA 2 cut(s) 96, 562
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 1000
BbsI GAAGAC 2 cut(s) 312, 983
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 71, 199, 492, 632
BccI CCATC 1 cut(s) 605
BceAI ACGGC 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 411, 491, 658
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 1009
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 2 cut(s) 271, 536
BisI GCNGC 5 cut(s) 60, 166, 213, 481, 621
BlsI GCNGC 5 cut(s) 61, 167, 214, 482, 622
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 328, 389
BmsI GCATC 2 cut(s) 357, 492
BpiI GAAGAC 2 cut(s) 312, 983
BpmI CTGGAG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 847
BsaI GGTCTC 1 cut(s) 658
BsaWI WCCGGW 2 cut(s) 697, 892
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 638, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 446, 662, 857
Bse3DI GCAATG 1 cut(s) 406
BseAI TCCGGA 2 cut(s) 697, 892
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 3 cut(s) 446, 662, 857
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 4 cut(s) 71, 199, 492, 632
BsgI GTGCAG 2 cut(s) 299, 514
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 4 cut(s) 96, 168, 388, 562
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 2 cut(s) 698, 893
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 3 cut(s) 411, 491, 658
BsmBI CGTCTC 2 cut(s) 411, 491
BsmI GAATGC 5 cut(s) 143, 350, 521, 707, 902
BsnI GGCC 4 cut(s) 96, 168, 388, 562
Bso31I GGTCTC 1 cut(s) 658
Bsp1286I GDGCHC 2 cut(s) 73, 1000
Bsp13I TCCGGA 2 cut(s) 697, 892
Bsp1407I TGTACA 2 cut(s) 374, 548
BspACI CCGC 5 cut(s) 165, 228, 414, 821, 969
BspANI GGCC 4 cut(s) 96, 168, 388, 562
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 2 cut(s) 697, 892
BspLI GGNNCC 2 cut(s) 328, 389
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 2 cut(s) 271, 536
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 2 cut(s) 374, 548
BsrI ACTGG 3 cut(s) 446, 662, 857
Bst6I CTCTTC 1 cut(s) 459
BstAPI GCANNNNNTGC 2 cut(s) 68, 405
BstAUI TGTACA 2 cut(s) 374, 548
BstBAI YACGTR 1 cut(s) 847
BstC8I GCNNGC 6 cut(s) 45, 79, 98, 184, 533, 759
BstDEI CTNAG 2 cut(s) 82, 393
BstEII GGTNACC 1 cut(s) 590
BstHHI GCGC 1 cut(s) 545
BstMAI GTCTC 3 cut(s) 411, 491, 658
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 68, 405, 551, 732
BstNSI RCATGY 2 cut(s) 427, 539
BstPI GGTNACC 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 71, 199, 492, 632
BstV2I GAAGAC 2 cut(s) 312, 983
BstXI CCANNNNNNTGG 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 4 cut(s) 96, 168, 388, 562
BtsIMutI CAGTG 2 cut(s) 681, 876
BveI ACCTGC 2 cut(s) 271, 536
Cac8I GCNNGC 6 cut(s) 45, 79, 98, 184, 533, 759
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 387
CseI GACGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 375, 549
CspCI CAANNNNNGTGG 4 cut(s) 657, 692, 852, 887
CviAII CATG 4 cut(s) 49, 74, 424, 536
CviQI GTAC 2 cut(s) 375, 549
DdeI CTNAG 2 cut(s) 82, 393
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 3 cut(s) 94, 166, 560
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 459
EclXI CGGCCG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 1000
Eco31I GGTCTC 1 cut(s) 658
Eco52I CGGCCG 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 590
EcoT22I ATGCAT 3 cut(s) 350, 707, 902
EcoT38I GRGCYC 1 cut(s) 1000
Esp3I CGTCTC 2 cut(s) 411, 491
FaeI CATG 4 cut(s) 52, 77, 427, 539
FatI CATG 4 cut(s) 48, 73, 423, 535
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 5 cut(s) 60, 166, 213, 481, 621
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 5 cut(s) 60, 166, 213, 481, 621
FspBI CTAG 2 cut(s) 66, 1009
GlaI GCGC 1 cut(s) 544
GluI GCNGC 5 cut(s) 60, 166, 213, 481, 621
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 4 cut(s) 96, 168, 388, 562
HapII CCGG 2 cut(s) 698, 893
HgaI GACGC 1 cut(s) 188
HhaI GCGC 1 cut(s) 545
Hin1II CATG 4 cut(s) 52, 77, 427, 539
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 4 cut(s) 317, 788, 794, 983
HpaII CCGG 2 cut(s) 698, 893
HphI GGTGA 2 cut(s) 295, 602
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 5 cut(s) 11, 136, 496, 514, 793
Hpy188III TCNNGA 3 cut(s) 256, 698, 893
Hpy8I GTNNAC 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 846
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 405, 551, 732
HpyF3I CTNAG 2 cut(s) 82, 393
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 4 cut(s) 52, 77, 427, 539
HspAI GCGC 1 cut(s) 543
Kpn2I TCCGGA 2 cut(s) 697, 892
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 4 cut(s) 71, 199, 492, 632
LweI GCATC 2 cut(s) 357, 492
MaeI CTAG 2 cut(s) 66, 1009
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 4 cut(s) 176, 590, 607, 716
MboII GAAGA 4 cut(s) 312, 476, 638, 988
MfeI CAATTG 3 cut(s) 312, 750, 945
MhlI GDGCHC 2 cut(s) 73, 1000
MlsI TGGCCA 2 cut(s) 96, 562
MluNI TGGCCA 2 cut(s) 96, 562
MlyI GAGTC 2 cut(s) 326, 788
MnlI CCTC 3 cut(s) 118, 674, 1010
Mox20I TGGCCA 2 cut(s) 96, 562
Mph1103I ATGCAT 3 cut(s) 350, 707, 902
MroI TCCGGA 2 cut(s) 697, 892
MscI TGGCCA 2 cut(s) 96, 562
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 2 cut(s) 96, 562
MspI CCGG 2 cut(s) 698, 893
MunI CAATTG 3 cut(s) 312, 750, 945
Mva1269I GAATGC 5 cut(s) 143, 350, 521, 707, 902
MwoI GCNNNNNNNGC 4 cut(s) 68, 405, 551, 732
NdeI CATATG 1 cut(s) 244
NlaIII CATG 4 cut(s) 52, 77, 427, 539
NlaIV GGNNCC 2 cut(s) 328, 389
NmuCI GTSAC 3 cut(s) 176, 590, 716
NsiI ATGCAT 3 cut(s) 350, 707, 902
NspI RCATGY 2 cut(s) 427, 539
OliI CACNNNNGTG 1 cut(s) 382
PaqCI CACCTGC 1 cut(s) 271
PciI ACATGT 1 cut(s) 423
PctI GAATGC 5 cut(s) 143, 350, 521, 707, 902
PfeI GAWTC 2 cut(s) 788, 983
PflFI GACNNNGTC 1 cut(s) 650
PkrI GCNGC 5 cut(s) 61, 167, 214, 482, 622
PleI GAGTC 2 cut(s) 325, 788
PpsI GAGTC 2 cut(s) 325, 788
Ppu21I YACGTR 1 cut(s) 847
PscI ACATGT 1 cut(s) 423
PspEI GGTNACC 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 328, 389
PspPI GGNCC 1 cut(s) 387
PstI CTGCAG 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 650
RsaI GTAC 2 cut(s) 376, 550
RsaNI GTAC 2 cut(s) 375, 549
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 5 cut(s) 60, 166, 213, 481, 621
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 2 cut(s) 326, 788
SduI GDGCHC 2 cut(s) 73, 1000
SfaNI GCATC 2 cut(s) 357, 492
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 65
SsiI CCGC 5 cut(s) 165, 228, 414, 821, 969
SspI AATATT 1 cut(s) 307
SspMI CTAG 2 cut(s) 66, 1009
TaiI ACGT 1 cut(s) 849
TaqI TCGA 2 cut(s) 645, 813
TaqII GACCGA 1 cut(s) 995
TatI WGTACW 2 cut(s) 374, 548
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 788, 983
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 2 cut(s) 681, 876
TseFI GTSAC 3 cut(s) 176, 590, 716
TseI GCWGC 4 cut(s) 59, 212, 480, 620
Tsp45I GTSAC 3 cut(s) 176, 590, 716
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 2 cut(s) 681, 876
Tth111I GACNNNGTC 1 cut(s) 650
XapI RAATTY 2 cut(s) 147, 298
XceI RCATGY 2 cut(s) 427, 539
XspI CTAG 2 cut(s) 66, 1009
Zsp2I ATGCAT 3 cut(s) 350, 707, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.