RchiOBHm_Chr3g0458901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000954
Physical Location & Seq
Forward (+)
7471800 .. 7475819
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42552

Sequence Viewer

Length: 1395 bp
ATGAGTTTCAGAAGTATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGACTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCCAAGAACCAACCAGACCCTAATTATGAATGCCAGAAAATTCCATTTCTACTGTGTGGCCGTATATGTGACTCATGCACCTGCGATAGGCGTGCGCCAGAGCTTGCAGAGTGCACTTGTTCACAGTGGAAACCATTTGCAGCACTCCAAAAATCTGACGAAGCACATGTGCAGGTGATAGAAAAAGAAAAATCTGCTATTCAAGTTCAGTCTTCAGGCACCATTCCATATGCAGAATGCATAAAAACTTGCGATAAATGTTTTTGTACACTAAGGTGGCCCCCTGAGAGCAATGTGTGCTTTTGCGGAGACAACAAGAAGTCCAAGAAGCCAGTTGCTTTAGTCCAAGAAGCGAAAATGAGTAGCAGCAACGTGAAATCAGAGATAATGCCATATTCAGAATGCCAGAAAAACTGCAAGCATGTATGCGCTTGTACACTAATTTGGCCACCTGAACTATCAACGTGCATTTGTGGTGACTACATCAAATCATCAGCCAATGAAGCGGCCGAAGAATTGCATAAAGAATTGGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGACGAGTGCGTAATTTGCACTAAGCCTTATCCAATTGAGCTTGCATTATGCTATTGTGGTAAAAAGACTGATTCTGACTCCAAGAAACCAGCAATCGAATATGCGGAAAAATTACTCACAGAATTGGCCGTGGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATCGAAAAATGTGACGAGTGTGTAATTTGTACAAAAAATTGGCCAATGGAGAAAGTATTGTGCTATTGTGGTAAAAAGACTGATTCCGACTCCAAGAAGCCAACAATCGAATATGCAGAAAAAGTACTTACAGAATTGGACATAGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGATGAGTGTGTGATTTGCACTTTTATTTATCCAATCGAGGCTGCACTATGCTATTGTGGTAAAAAGACTGCTTCCAACTCCAAGAAACCAGCAATCGAATATGCGGAAAAATTACTCACAGAATTGGCCGTGGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATAGAGAAATGTGATGAGTGTACAATTTGTACATTGATTTATCCAATTGAGAAAGCATTGTGCTATTGCGGTAAGAAGACCGAAGCTGAAGGCAGAGCCCTCCCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

464

Amino Acids

51.23

Weight (kDa)

6.24

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 197, 271
Acc36I ACCTGC 2 cut(s) 197, 271
AccB1I GGYRCC 1 cut(s) 326
AccIII TCCGGA 4 cut(s) 691, 886, 1081, 1276
AciI CCGC 5 cut(s) 414, 614, 815, 1205, 1353
AcoI YGGCCR 9 cut(s) 94, 166, 554, 615, 837, 843, 935, 1227, 1233
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 306, 1392
AfaI GTAC 6 cut(s) 376, 544, 925, 1020, 1306, 1315
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 4 cut(s) 22, 311, 704, 1094
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 4 cut(s) 100, 211, 751, 1370
AluI AGCT 4 cut(s) 100, 211, 751, 1370
Alw21I GWGCWC 2 cut(s) 73, 224
Alw26I GTCTC 2 cut(s) 411, 652
Alw44I GTGCAC 1 cut(s) 220
Aor13HI TCCGGA 4 cut(s) 691, 886, 1081, 1276
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 4 cut(s) 59, 248, 474, 1142
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 2 cut(s) 205, 539
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 295, 596
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 5 cut(s) 96, 556, 845, 937, 1235
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 1384
BbsI GAAGAC 2 cut(s) 312, 1367
Bbv12I GWGCWC 2 cut(s) 73, 224
BbvI GCAGC 4 cut(s) 71, 260, 486, 1129
BceAI ACGGC 3 cut(s) 153, 824, 1214
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcoDI GTCTC 2 cut(s) 411, 652
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 1393
BfuAI ACCTGC 2 cut(s) 197, 271
BisI GCNGC 5 cut(s) 60, 249, 475, 615, 1143
BlsI GCNGC 5 cut(s) 61, 250, 476, 616, 1144
BmcAI AGTACT 1 cut(s) 1020
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 328, 389
BmsI GCATC 1 cut(s) 903
BpiI GAAGAC 2 cut(s) 312, 1367
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 2 cut(s) 840, 1230
BsaWI WCCGGW 4 cut(s) 691, 886, 1081, 1276
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 5 cut(s) 440, 656, 851, 1046, 1241
Bse3DI GCAATG 1 cut(s) 406
BseAI TCCGGA 4 cut(s) 691, 886, 1081, 1276
BseDI CCNNGG 2 cut(s) 840, 1230
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 5 cut(s) 440, 656, 851, 1046, 1241
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 4 cut(s) 71, 260, 486, 1129
BsgI GTGCAG 2 cut(s) 299, 1128
Bsh1285I CGRYCG 1 cut(s) 618
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 618
BsiHKAI GWGCWC 2 cut(s) 73, 224
BsiSI CCGG 4 cut(s) 692, 887, 1082, 1277
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 411, 652
BsmI GAATGC 7 cut(s) 143, 350, 515, 701, 896, 1091, 1286
Bso31I GGTCTC 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 73, 224, 1384
Bsp13I TCCGGA 4 cut(s) 691, 886, 1081, 1276
Bsp1407I TGTACA 5 cut(s) 374, 542, 923, 1304, 1313
BspACI CCGC 5 cut(s) 414, 614, 815, 1205, 1353
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 4 cut(s) 691, 886, 1081, 1276
BspLI GGNNCC 2 cut(s) 328, 389
BspMI ACCTGC 2 cut(s) 197, 271
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 5 cut(s) 374, 542, 923, 1304, 1313
BsrI ACTGG 5 cut(s) 440, 656, 851, 1046, 1241
BssECI CCNNGG 2 cut(s) 840, 1230
Bst4CI ACNGT 2 cut(s) 162, 234
BstAPI GCANNNNNTGC 2 cut(s) 68, 405
BstAUI TGTACA 5 cut(s) 374, 542, 923, 1304, 1313
BstC8I GCNNGC 7 cut(s) 45, 79, 98, 201, 213, 527, 753
BstDEI CTNAG 4 cut(s) 82, 380, 393, 732
BstDSI CCRYGG 2 cut(s) 840, 1230
BstENI CCTNNNNNAGG 1 cut(s) 193
BstHHI GCGC 2 cut(s) 205, 539
BstMAI GTCTC 2 cut(s) 411, 652
BstMCI CGRYCG 1 cut(s) 618
BstMWI GCNNNNNNNGC 4 cut(s) 68, 405, 611, 726
BstNSI RCATGY 2 cut(s) 278, 533
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 71, 260, 486, 1129
BstV2I GAAGAC 2 cut(s) 312, 1367
BstXI CCANNNNNNTGG 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 615
BtgI CCRYGG 2 cut(s) 840, 1230
BtsIMutI CAGTG 5 cut(s) 239, 675, 870, 1065, 1260
BveI ACCTGC 2 cut(s) 197, 271
Cac8I GCNNGC 7 cut(s) 45, 79, 98, 201, 213, 527, 753
CfoI GCGC 2 cut(s) 205, 539
Cfr13I GGNCC 1 cut(s) 387
Csp6I GTAC 6 cut(s) 375, 543, 924, 1019, 1305, 1314
CspCI CAANNNNNGTGG 8 cut(s) 651, 686, 846, 881, 1041, 1076, 1236, 1271
CviAII CATG 5 cut(s) 49, 74, 183, 275, 530
CviQI GTAC 6 cut(s) 375, 543, 924, 1019, 1305, 1314
DdeI CTNAG 4 cut(s) 82, 380, 393, 732
EaeI YGGCCR 9 cut(s) 94, 166, 554, 615, 837, 843, 935, 1227, 1233
EagI CGGCCG 1 cut(s) 615
EclXI CGGCCG 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 1384
Eco31I GGTCTC 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 306, 1392
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoT22I ATGCAT 5 cut(s) 350, 701, 896, 1091, 1286
EcoT38I GRGCYC 1 cut(s) 1384
FaeI CATG 5 cut(s) 52, 77, 186, 278, 533
FatI CATG 5 cut(s) 48, 73, 182, 274, 529
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 5 cut(s) 60, 249, 475, 615, 1143
FriOI GRGCYC 1 cut(s) 1384
Fsp4HI GCNGC 5 cut(s) 60, 249, 475, 615, 1143
FspBI CTAG 2 cut(s) 66, 1393
GlaI GCGC 2 cut(s) 204, 538
GluI GCNGC 5 cut(s) 60, 249, 475, 615, 1143
HapII CCGG 4 cut(s) 692, 887, 1082, 1277
HhaI GCGC 2 cut(s) 205, 539
Hin1II CATG 5 cut(s) 52, 77, 186, 278, 533
Hin6I GCGC 2 cut(s) 203, 537
HinP1I GCGC 2 cut(s) 203, 537
HinfI GANTC 5 cut(s) 179, 782, 788, 977, 983
HpaII CCGG 4 cut(s) 692, 887, 1082, 1277
HphI GGTGA 2 cut(s) 295, 596
Hpy166II GTNNAC 5 cut(s) 222, 230, 377, 545, 1305
Hpy188I TCNGA 6 cut(s) 11, 265, 490, 508, 787, 982
Hpy188III TCNNGA 4 cut(s) 692, 887, 1082, 1277
Hpy8I GTNNAC 5 cut(s) 222, 230, 377, 545, 1305
HpyAV CCTTC 1 cut(s) 1367
HpyCH4III ACNGT 2 cut(s) 162, 234
HpyCH4IV ACGT 2 cut(s) 480, 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 405, 611, 726
HpyF3I CTNAG 4 cut(s) 82, 380, 393, 732
HpySE526I ACGT 2 cut(s) 480, 572
Hsp92II CATG 5 cut(s) 52, 77, 186, 278, 533
HspAI GCGC 2 cut(s) 203, 537
Kpn2I TCCGGA 4 cut(s) 691, 886, 1081, 1276
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 4 cut(s) 71, 260, 486, 1129
LweI GCATC 1 cut(s) 903
MaeI CTAG 2 cut(s) 66, 1393
MaeII ACGT 2 cut(s) 480, 572
MaeIII GTNAC 4 cut(s) 176, 584, 710, 905
MboII GAAGA 3 cut(s) 312, 632, 1372
MfeI CAATTG 2 cut(s) 744, 1329
MhlI GDGCHC 3 cut(s) 73, 224, 1384
MlsI TGGCCA 5 cut(s) 96, 556, 845, 937, 1235
MluNI TGGCCA 5 cut(s) 96, 556, 845, 937, 1235
MlyI GAGTC 3 cut(s) 173, 782, 977
MmeI TCCRAC 2 cut(s) 1005, 1200
MnlI CCTC 7 cut(s) 118, 668, 863, 1058, 1132, 1253, 1394
Mox20I TGGCCA 5 cut(s) 96, 556, 845, 937, 1235
Mph1103I ATGCAT 5 cut(s) 350, 701, 896, 1091, 1286
MroI TCCGGA 4 cut(s) 691, 886, 1081, 1276
MscI TGGCCA 5 cut(s) 96, 556, 845, 937, 1235
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 5 cut(s) 96, 556, 845, 937, 1235
MspI CCGG 4 cut(s) 692, 887, 1082, 1277
MunI CAATTG 2 cut(s) 744, 1329
Mva1269I GAATGC 7 cut(s) 143, 350, 515, 701, 896, 1091, 1286
MwoI GCNNNNNNNGC 4 cut(s) 68, 405, 611, 726
NdeI CATATG 1 cut(s) 337
NlaIII CATG 5 cut(s) 52, 77, 186, 278, 533
NlaIV GGNNCC 2 cut(s) 328, 389
NmuCI GTSAC 4 cut(s) 176, 584, 710, 905
NsiI ATGCAT 5 cut(s) 350, 701, 896, 1091, 1286
NspI RCATGY 2 cut(s) 278, 533
OliI CACNNNNGTG 1 cut(s) 382
PaqCI CACCTGC 2 cut(s) 197, 271
PciI ACATGT 1 cut(s) 274
PctI GAATGC 7 cut(s) 143, 350, 515, 701, 896, 1091, 1286
PfeI GAWTC 2 cut(s) 782, 977
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 61, 250, 476, 616, 1144
PleI GAGTC 3 cut(s) 173, 782, 977
PpsI GAGTC 3 cut(s) 173, 782, 977
PscI ACATGT 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 328, 389
PspPI GGNCC 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 6 cut(s) 376, 544, 925, 1020, 1306, 1315
RsaNI GTAC 6 cut(s) 375, 543, 924, 1019, 1305, 1314
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 5 cut(s) 60, 249, 475, 615, 1143
Sau96I GGNCC 1 cut(s) 387
ScaI AGTACT 1 cut(s) 1020
SchI GAGTC 3 cut(s) 173, 782, 977
SduI GDGCHC 3 cut(s) 73, 224, 1384
SfaNI GCATC 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 65
SsiI CCGC 5 cut(s) 414, 614, 815, 1205, 1353
SspMI CTAG 2 cut(s) 66, 1393
TaaI ACNGT 2 cut(s) 162, 234
TaiI ACGT 2 cut(s) 483, 575
TaqI TCGA 5 cut(s) 807, 897, 1002, 1137, 1197
TaqII GACCGA 1 cut(s) 1379
TatI WGTACW 6 cut(s) 374, 542, 923, 1018, 1304, 1313
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 2 cut(s) 782, 977
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 5 cut(s) 239, 675, 870, 1065, 1260
TseFI GTSAC 4 cut(s) 176, 584, 710, 905
TseI GCWGC 4 cut(s) 59, 248, 474, 1142
Tsp45I GTSAC 4 cut(s) 176, 584, 710, 905
TspDTI ATGAA 2 cut(s) 150, 624
TspRI CASTG 5 cut(s) 239, 675, 870, 1065, 1260
Tth111I GACNNNGTC 1 cut(s) 644
VneI GTGCAC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 147
XceI RCATGY 2 cut(s) 278, 533
XspI CTAG 2 cut(s) 66, 1393
ZrmI AGTACT 1 cut(s) 1020
Zsp2I ATGCAT 5 cut(s) 350, 701, 896, 1091, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.