Rroxscaffold_7G00158640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000954
Physical Location & Seq
Reverse (-)
1979623 .. 1992070
12448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158640.1

Sequence Viewer

Length: 234 bp
ATGGCTTGTTGCTCCAACGGAACTGAAATCAGTTTGAGTCCTTACCACCAAGCTAGAGGTATATATTCGCGGTCATTGTCAATTTTTGAGATTTACGATAAAATAACCAGAAGCCCCTGCACTGCTTTAATTTTGGGAGCACCATTTGCGTGTCTGCAGCAGTTTCTTCCCGTCTTCTTTCGTCTCTGTGTCTGTTTGCTTTGTGAGAGTGAAGACAGTAAACTAAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.66

Weight (kDa)

6.54

Isoelectric Point (pI)

88.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 70
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 166, 219
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 166, 219
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 70
BspFNI CGCG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 155
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 2 cut(s) 166, 219
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
CviJI RGCY 3 cut(s) 5, 53, 114
CviKI_1 RGCY 3 cut(s) 5, 53, 114
DdeI CTNAG 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 188
FaiI YATR 2 cut(s) 62, 64
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 54
GluI GCNGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 120, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 224
LmnI GCTCC 2 cut(s) 17, 137
LpnPI CCDG 2 cut(s) 121, 130
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 1 cut(s) 54
MboII GAAGA 3 cut(s) 158, 166, 224
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 81, 129
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 50
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 148
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 1 cut(s) 158
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 142
SetI ASST 2 cut(s) 55, 61
SfcI CTRYAG 1 cut(s) 155
SgeI CNNG 8 cut(s) 18, 62, 66, 81, 120, 129, 162, 182
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 2 cut(s) 81, 129
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 218
TasI AATT 2 cut(s) 81, 129
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 127
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.