Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Reverse (-)

41853725 .. 41856099

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGACTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGTCAGCTCCTTACCTCCACAAACCAACCAGGCCCTAATTATGAATGTCAGAAAATTCCATTTCTACTGTGTGGCCGTATATGTGACTCATGCACCTGCGATAGGCGTGCACCAGAGCTTGCAGAGTGCACTTGTTCACAGTGGAAACCATTTGCAGCACTCCAAAAATCTGACGAAGCACATGTGCAGGTGATAGAAAAAGAAAAATCTGCTATTCAAGTTGAGTCTTCAGGGACCATTCCATATACAGAGTGCATAAAAACTTGCGATAAATGTTTTTGTACACAAAAGTGGCCCCCTGAGAGCAATGTGTGCATTTGCGGAGACAACAACGAGTCCAAGAAGCCAGTTGCGTTAGTCCAAGACGCGAAAATGAGTAGCAGCAACGTGAAATCAGAGATAATGCCGTATTCAGAATGCCAGAAAAACTGCAAGCATGTTTGCGCTTGTACACTAATTTGGCCACCTGAACTCTCAACGTGCATTTGTGGTGACTACATCAAATCATCAGCCAATAAAGCGGCCGAAGAATTGCATAAAGAATTGGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTAGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGACGAGTGCGTAATTTGCACTTTACCTTATCCAATTGAGCTTGCATTATGCTATTGTGGTAAAAAGACTGATTCCGACTCCAAGAAACCAGCGATTGAATATGCGGAGAAATTACTTACAGAATTACAAGTAGCCAAACCAGTTGCAAAACCAGTGGGAGGCTTTATTCCATATCCGGAATGCATAGAGAAATGTGATGACTGTTCAATTTGTACATTGATTTATCCAATTGAGAAAGCATTGTGCTACTGCGGTAAGAACACCGAAGCTGAAGGCAGAGCCCTCTCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.18

Weight (kDa)

5.47

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	182, 256
Acc36I	ACCTGC	2 cut(s)	182, 256
AccII	CGCG	1 cut(s)	446
AccIII	TCCGGA	2 cut(s)	676, 871
AciI	CCGC	4 cut(s)	399, 599, 800, 948
AcoI	YGGCCR	3 cut(s)	151, 539, 600
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	2 cut(s)	291, 987
AfaI	GTAC	3 cut(s)	361, 529, 910
AfiI	CCNNNNNNNGG	2 cut(s)	180, 854
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	7, 296, 689, 794, 903
AhlI	ACTAGT	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	106
AleI	CACNNNNGTG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	85, 196, 736, 965
AluI	AGCT	4 cut(s)	85, 196, 736, 965
Alw21I	GWGCWC	3 cut(s)	58, 190, 209
Alw26I	GTCTC	2 cut(s)	396, 637
Alw44I	GTGCAC	2 cut(s)	186, 205
Aor13HI	TCCGGA	2 cut(s)	676, 871
AoxI	GGCC	5 cut(s)	109, 151, 371, 539, 600
ApaLI	GTGCAC	2 cut(s)	186, 205
ApeKI	GCWGC	3 cut(s)	44, 233, 459
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	3 cut(s)	110, 312, 372
AsuHPI	GGTGA	2 cut(s)	280, 581
AvaII	GGWCC	1 cut(s)	312
BaeGI	GKGCMC	2 cut(s)	190, 209
BalI	TGGCCA	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	979
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	3 cut(s)	58, 190, 209
BbvI	GCAGC	3 cut(s)	56, 245, 471
BceAI	ACGGC	2 cut(s)	138, 469
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	396, 637
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	2 cut(s)	51, 988
BfuAI	ACCTGC	2 cut(s)	182, 256
BisI	GCNGC	4 cut(s)	45, 234, 460, 600
BlsI	GCNGC	4 cut(s)	46, 235, 461, 601
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	3 cut(s)	110, 312, 372
BmiI	GGNNCC	2 cut(s)	313, 374
BmrFI	CCNGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	637
BsaWI	WCCGGW	2 cut(s)	676, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 854
Bse1I	ACTGG	4 cut(s)	425, 641, 836, 848
Bse3DI	GCAATG	1 cut(s)	391
BseAI	TCCGGA	2 cut(s)	676, 871
BseBI	CCWGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	180, 854
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	4 cut(s)	425, 641, 836, 848
BseSI	GKGCMC	2 cut(s)	190, 209
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	56, 245, 471
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	5 cut(s)	111, 153, 373, 541, 602
BsiEI	CGRYCG	1 cut(s)	603
BsiHKAI	GWGCWC	3 cut(s)	58, 190, 209
BsiSI	CCGG	2 cut(s)	677, 872
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	180, 854
BsmAI	GTCTC	2 cut(s)	396, 637
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	3 cut(s)	500, 686, 881
BsnI	GGCC	5 cut(s)	111, 153, 373, 541, 602
Bso31I	GGTCTC	1 cut(s)	637
Bsp1286I	GDGCHC	4 cut(s)	58, 190, 209, 979
Bsp13I	TCCGGA	2 cut(s)	676, 871
Bsp1407I	TGTACA	3 cut(s)	359, 527, 908
BspACI	CCGC	4 cut(s)	399, 599, 800, 948
BspANI	GGCC	5 cut(s)	111, 153, 373, 541, 602
BspCNI	CTCAG	1 cut(s)	370
BspEI	TCCGGA	2 cut(s)	676, 871
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	313, 374
BspMI	ACCTGC	2 cut(s)	182, 256
BspTNI	GGTCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	391
BsrGI	TGTACA	3 cut(s)	359, 527, 908
BsrI	ACTGG	4 cut(s)	425, 641, 836, 848
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	147, 219, 899
BstAPI	GCANNNNNTGC	2 cut(s)	53, 390
BstAUI	TGTACA	3 cut(s)	359, 527, 908
BstC8I	GCNNGC	6 cut(s)	30, 64, 186, 198, 512, 738
BstDEI	CTNAG	2 cut(s)	67, 378
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	524
BstMAI	GTCTC	2 cut(s)	396, 637
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 390, 596, 711
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	2 cut(s)	263, 518
BstSCI	CCNGG	1 cut(s)	106
BstSLI	GKGCMC	2 cut(s)	190, 209
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	56, 245, 471
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	5 cut(s)	111, 153, 373, 541, 602
BtsIMutI	CAGTG	2 cut(s)	224, 855
BveI	ACCTGC	2 cut(s)	182, 256
Cac8I	GCNNGC	6 cut(s)	30, 64, 186, 198, 512, 738
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	110, 312, 372
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	360, 528, 909
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	5 cut(s)	34, 59, 168, 260, 515
CviQI	GTAC	3 cut(s)	360, 528, 909
DdeI	CTNAG	2 cut(s)	67, 378
EaeI	YGGCCR	3 cut(s)	151, 539, 600
EagI	CGGCCG	1 cut(s)	600
EclXI	CGGCCG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	979
Eco31I	GGTCTC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	291, 987
EcoNI	CCTNNNNNAGG	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	106
EcoT22I	ATGCAT	2 cut(s)	686, 881
EcoT38I	GRGCYC	1 cut(s)	979
FaeI	CATG	5 cut(s)	37, 62, 171, 263, 518
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	5 cut(s)	33, 58, 167, 259, 514
Fnu4HI	GCNGC	4 cut(s)	45, 234, 460, 600
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	4 cut(s)	45, 234, 460, 600
FspBI	CTAG	2 cut(s)	51, 988
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	4 cut(s)	45, 234, 460, 600
HaeIII	GGCC	5 cut(s)	111, 153, 373, 541, 602
HapII	CCGG	2 cut(s)	677, 872
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	5 cut(s)	37, 62, 171, 263, 518
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HinfI	GANTC	5 cut(s)	164, 302, 413, 767, 773
HpaII	CCGG	2 cut(s)	677, 872
HphI	GGTGA	2 cut(s)	280, 581
Hpy166II	GTNNAC	5 cut(s)	188, 207, 215, 362, 530
Hpy188I	TCNGA	5 cut(s)	129, 250, 475, 493, 772
Hpy188III	TCNNGA	2 cut(s)	677, 872
Hpy8I	GTNNAC	5 cut(s)	188, 207, 215, 362, 530
HpyAV	CCTTC	1 cut(s)	962
HpyCH4III	ACNGT	3 cut(s)	147, 219, 899
HpyCH4IV	ACGT	2 cut(s)	465, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 390, 596, 711
HpyF3I	CTNAG	2 cut(s)	67, 378
HpySE526I	ACGT	2 cut(s)	465, 557
Hsp92II	CATG	5 cut(s)	37, 62, 171, 263, 518
HspAI	GCGC	1 cut(s)	522
Kpn2I	TCCGGA	2 cut(s)	676, 871
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	3 cut(s)	56, 245, 471
MaeI	CTAG	2 cut(s)	51, 988
MaeII	ACGT	2 cut(s)	465, 557
MaeIII	GTNAC	3 cut(s)	161, 569, 695
MboII	GAAGA	2 cut(s)	297, 617
MfeI	CAATTG	2 cut(s)	729, 924
MhlI	GDGCHC	4 cut(s)	58, 190, 209, 979
MlsI	TGGCCA	1 cut(s)	541
MluNI	TGGCCA	1 cut(s)	541
MlyI	GAGTC	4 cut(s)	158, 311, 422, 767
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	4 cut(s)	103, 653, 848, 989
Mox20I	TGGCCA	1 cut(s)	541
Mph1103I	ATGCAT	2 cut(s)	686, 881
MroI	TCCGGA	2 cut(s)	676, 871
MscI	TGGCCA	1 cut(s)	541
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	367
Msp20I	TGGCCA	1 cut(s)	541
MspI	CCGG	2 cut(s)	677, 872
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	2 cut(s)	729, 924
Mva1269I	GAATGC	3 cut(s)	500, 686, 881
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	53, 390, 596, 711
NlaIII	CATG	5 cut(s)	37, 62, 171, 263, 518
NlaIV	GGNNCC	2 cut(s)	313, 374
NmuCI	GTSAC	3 cut(s)	161, 569, 695
NsiI	ATGCAT	2 cut(s)	686, 881
NspI	RCATGY	2 cut(s)	263, 518
OliI	CACNNNNGTG	1 cut(s)	367
PaqCI	CACCTGC	2 cut(s)	182, 256
PciI	ACATGT	1 cut(s)	259
PctI	GAATGC	3 cut(s)	500, 686, 881
PfeI	GAWTC	1 cut(s)	767
PflFI	GACNNNGTC	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	46, 235, 461, 601
PleI	GAGTC	4 cut(s)	158, 310, 421, 767
PpsI	GAGTC	4 cut(s)	158, 310, 421, 767
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	313, 374
PspPI	GGNCC	3 cut(s)	110, 312, 372
PsyI	GACNNNGTC	1 cut(s)	629
RsaI	GTAC	3 cut(s)	361, 529, 910
RsaNI	GTAC	3 cut(s)	360, 528, 909
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	4 cut(s)	45, 234, 460, 600
Sau96I	GGNCC	3 cut(s)	110, 312, 372
SchI	GAGTC	4 cut(s)	158, 311, 422, 767
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	4 cut(s)	58, 190, 209, 979
SinI	GGWCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	367
SpeI	ACTAGT	1 cut(s)	50
SsiI	CCGC	4 cut(s)	399, 599, 800, 948
SspMI	CTAG	2 cut(s)	51, 988
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	147, 219, 899
TaiI	ACGT	2 cut(s)	468, 560
TatI	WGTACW	3 cut(s)	359, 527, 908
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	224, 855
TseFI	GTSAC	3 cut(s)	161, 569, 695
TseI	GCWGC	3 cut(s)	44, 233, 459
Tsp45I	GTSAC	3 cut(s)	161, 569, 695
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	224, 855
Tth111I	GACNNNGTC	1 cut(s)	629
VneI	GTGCAC	2 cut(s)	186, 205
VpaK11BI	GGWCC	1 cut(s)	312
XagI	CCTNNNNNAGG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	263, 518
XspI	CTAG	2 cut(s)	51, 988
Zsp2I	ATGCAT	2 cut(s)	686, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.