Rh3BG093200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000954
Physical Location & Seq
Forward (+)
7363652 .. 7390708
27057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG093200.1

Sequence Viewer

Length: 1200 bp
ATGAGTTTCAGAAGTATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGACTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCCAAGAACCAACCAGACCCTAATTATGAATGCCAGAAAATTCCATTTCTACTGTGTGGCCGTATATGTGACTCATGCACCTGCGATAGGCGTGCGCCAGAGCTTGCAGAGTGCACTTGTTCACAGTGGAAACCATTTGCAGCACTCCAAAAATCTGACGAAGCACATGTGCAGGTGATAGAAAAAGAAAAATCTGCTATTCAAGTTCAGTCTTCAGGCACCATTCCATATGCAGAATGCATAAAAACTTGCGATAAATGTTTTTGTACACTAAGGTGGCCCCCTGAGAGCAATGTGTGCTTTTGCGGAGACAACAAGAAGTCCAAGAAGCCAGTTGCTTTAGTCCAAGAAGCGAAAATGAGTAGCAGCAACGTGAAATCAGAGATAATGCCATATTCAGAATGCCAGAAAAACTGCAAGCATGTATGCGCTTGTACACTAATTTGGCCACCTGAACTATCAACGTGCATTTGTGGTGACTACATCAAATCATCAGCCAATGAAGCGGCCGAAGAATTGCATAAAGAATTGGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATTGAAAAATGTGACGAGTGCGTAATTTGCACTAAGCCTTATCCAATTGAGCTTGCATTATGCTATTGTGGTAAAAAGACTGATTCTGACTCCAAGAAACCAGCAATCGAATATGCGGAAAAATTACTCACAGAATTGGCCGTGGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCGGAATGCATCGAAAAATGTGACGAGTGTGTAATTTGTACAAAAAATTGGCCAATGGAGAAAGTATTGTGCTATTGTGGTAAAAAGACTGATTCCGACTCCAAGAAGCCAACAATCGAATATGCAGAAAAATTACTTACAGAATTGGACGTAGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCTAGAATGCATAGAGAAATGTGATGACTGCACAGTATGTACACTTATTTATCCAATTGAGAGAGCATTGTGCTATTGCGGTAAGACGACCGGAGCTGAAGCCAGAGCCCTCCCCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

44.11

Weight (kDa)

6.21

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 197, 271
Acc36I ACCTGC 2 cut(s) 197, 271
AccB1I GGYRCC 1 cut(s) 326
AccIII TCCGGA 2 cut(s) 691, 886
AciI CCGC 4 cut(s) 414, 614, 815, 1158
AcoI YGGCCR 7 cut(s) 94, 166, 554, 615, 837, 843, 935
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 306, 1197
AfaI GTAC 4 cut(s) 376, 544, 925, 1120
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 22, 311, 704
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 382
AluBI AGCT 4 cut(s) 100, 211, 751, 1175
AluI AGCT 4 cut(s) 100, 211, 751, 1175
Alw21I GWGCWC 2 cut(s) 73, 224
Alw26I GTCTC 2 cut(s) 411, 652
Alw44I GTGCAC 1 cut(s) 220
Aor13HI TCCGGA 2 cut(s) 691, 886
AoxI GGCC 8 cut(s) 94, 166, 386, 554, 615, 837, 843, 935
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 3 cut(s) 59, 248, 474
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 2 cut(s) 205, 539
AspS9I GGNCC 1 cut(s) 387
AsuHPI GGTGA 2 cut(s) 295, 596
BaeGI GKGCMC 1 cut(s) 224
BalI TGGCCA 4 cut(s) 96, 556, 845, 937
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 1189
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 73, 224
BbvI GCAGC 3 cut(s) 71, 260, 486
BceAI ACGGC 2 cut(s) 153, 824
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcoDI GTCTC 2 cut(s) 411, 652
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 3 cut(s) 66, 1082, 1198
BfuAI ACCTGC 2 cut(s) 197, 271
BisI GCNGC 4 cut(s) 60, 249, 475, 615
BlsI GCNGC 4 cut(s) 61, 250, 476, 616
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 328, 389
BmsI GCATC 1 cut(s) 903
BpiI GAAGAC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 1 cut(s) 840
BsaWI WCCGGW 3 cut(s) 691, 886, 1169
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 4 cut(s) 440, 656, 851, 1046
Bse3DI GCAATG 1 cut(s) 406
BseAI TCCGGA 2 cut(s) 691, 886
BseDI CCNNGG 1 cut(s) 840
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 440, 656, 851, 1046
BseSI GKGCMC 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 71, 260, 486
BsgI GTGCAG 2 cut(s) 299, 1093
Bsh1285I CGRYCG 2 cut(s) 618, 1170
BshFI GGCC 8 cut(s) 96, 168, 388, 556, 617, 839, 845, 937
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 2 cut(s) 618, 1170
BsiHKAI GWGCWC 2 cut(s) 73, 224
BsiSI CCGG 3 cut(s) 692, 887, 1170
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 411, 652
BsmI GAATGC 6 cut(s) 143, 350, 515, 701, 896, 1091
BsnI GGCC 8 cut(s) 96, 168, 388, 556, 617, 839, 845, 937
Bso31I GGTCTC 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 73, 224, 1189
Bsp13I TCCGGA 2 cut(s) 691, 886
Bsp1407I TGTACA 4 cut(s) 374, 542, 923, 1118
BspACI CCGC 4 cut(s) 414, 614, 815, 1158
BspANI GGCC 8 cut(s) 96, 168, 388, 556, 617, 839, 845, 937
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 2 cut(s) 691, 886
BspLI GGNNCC 2 cut(s) 328, 389
BspMI ACCTGC 2 cut(s) 197, 271
BspT107I GGYRCC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 4 cut(s) 374, 542, 923, 1118
BsrI ACTGG 4 cut(s) 440, 656, 851, 1046
BssECI CCNNGG 1 cut(s) 840
Bst4CI ACNGT 3 cut(s) 162, 234, 1114
BstAPI GCANNNNNTGC 2 cut(s) 68, 405
BstAUI TGTACA 4 cut(s) 374, 542, 923, 1118
BstC8I GCNNGC 7 cut(s) 45, 79, 98, 201, 213, 527, 753
BstDEI CTNAG 4 cut(s) 82, 380, 393, 732
BstDSI CCRYGG 1 cut(s) 840
BstENI CCTNNNNNAGG 1 cut(s) 193
BstHHI GCGC 2 cut(s) 205, 539
BstMAI GTCTC 2 cut(s) 411, 652
BstMCI CGRYCG 2 cut(s) 618, 1170
BstMWI GCNNNNNNNGC 4 cut(s) 68, 405, 611, 726
BstNSI RCATGY 2 cut(s) 278, 533
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 71, 260, 486
BstV2I GAAGAC 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 55
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 8 cut(s) 96, 168, 388, 556, 617, 839, 845, 937
BtgI CCRYGG 1 cut(s) 840
BtsIMutI CAGTG 4 cut(s) 239, 675, 870, 1065
BveI ACCTGC 2 cut(s) 197, 271
Cac8I GCNNGC 7 cut(s) 45, 79, 98, 201, 213, 527, 753
CfoI GCGC 2 cut(s) 205, 539
Cfr13I GGNCC 1 cut(s) 387
Csp6I GTAC 4 cut(s) 375, 543, 924, 1119
CspCI CAANNNNNGTGG 6 cut(s) 651, 686, 846, 881, 1041, 1076
CviAII CATG 5 cut(s) 49, 74, 183, 275, 530
CviQI GTAC 4 cut(s) 375, 543, 924, 1119
DdeI CTNAG 4 cut(s) 82, 380, 393, 732
EaeI YGGCCR 7 cut(s) 94, 166, 554, 615, 837, 843, 935
EagI CGGCCG 1 cut(s) 615
EclXI CGGCCG 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 1189
Eco31I GGTCTC 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 615
Eco57I CTGAAG 2 cut(s) 306, 1197
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoT22I ATGCAT 4 cut(s) 350, 701, 896, 1091
EcoT38I GRGCYC 1 cut(s) 1189
FaeI CATG 5 cut(s) 52, 77, 186, 278, 533
FatI CATG 5 cut(s) 48, 73, 182, 274, 529
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 60, 249, 475, 615
FriOI GRGCYC 1 cut(s) 1189
Fsp4HI GCNGC 4 cut(s) 60, 249, 475, 615
FspBI CTAG 3 cut(s) 66, 1082, 1198
GlaI GCGC 2 cut(s) 204, 538
GluI GCNGC 4 cut(s) 60, 249, 475, 615
HaeIII GGCC 8 cut(s) 96, 168, 388, 556, 617, 839, 845, 937
HapII CCGG 3 cut(s) 692, 887, 1170
HhaI GCGC 2 cut(s) 205, 539
Hin1II CATG 5 cut(s) 52, 77, 186, 278, 533
Hin6I GCGC 2 cut(s) 203, 537
HinP1I GCGC 2 cut(s) 203, 537
HinfI GANTC 5 cut(s) 179, 782, 788, 977, 983
HpaII CCGG 3 cut(s) 692, 887, 1170
HphI GGTGA 2 cut(s) 295, 596
Hpy166II GTNNAC 5 cut(s) 222, 230, 377, 545, 1121
Hpy188I TCNGA 6 cut(s) 11, 265, 490, 508, 787, 982
Hpy188III TCNNGA 3 cut(s) 692, 887, 1082
Hpy8I GTNNAC 5 cut(s) 222, 230, 377, 545, 1121
HpyCH4III ACNGT 3 cut(s) 162, 234, 1114
HpyCH4IV ACGT 3 cut(s) 480, 572, 1035
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 405, 611, 726
HpyF3I CTNAG 4 cut(s) 82, 380, 393, 732
HpySE526I ACGT 3 cut(s) 480, 572, 1035
Hsp92II CATG 5 cut(s) 52, 77, 186, 278, 533
HspAI GCGC 2 cut(s) 203, 537
Kpn2I TCCGGA 2 cut(s) 691, 886
LmnI GCTCC 2 cut(s) 105, 1172
Lsp1109I GCAGC 3 cut(s) 71, 260, 486
LweI GCATC 1 cut(s) 903
MaeI CTAG 3 cut(s) 66, 1082, 1198
MaeII ACGT 3 cut(s) 480, 572, 1035
MaeIII GTNAC 4 cut(s) 176, 584, 710, 905
MboII GAAGA 2 cut(s) 312, 632
MfeI CAATTG 2 cut(s) 744, 1134
MhlI GDGCHC 3 cut(s) 73, 224, 1189
MlsI TGGCCA 4 cut(s) 96, 556, 845, 937
MluNI TGGCCA 4 cut(s) 96, 556, 845, 937
MlyI GAGTC 3 cut(s) 173, 782, 977
MmeI TCCRAC 1 cut(s) 1005
MnlI CCTC 5 cut(s) 118, 668, 863, 1058, 1199
Mox20I TGGCCA 4 cut(s) 96, 556, 845, 937
Mph1103I ATGCAT 4 cut(s) 350, 701, 896, 1091
MroI TCCGGA 2 cut(s) 691, 886
MscI TGGCCA 4 cut(s) 96, 556, 845, 937
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 382
Msp20I TGGCCA 4 cut(s) 96, 556, 845, 937
MspI CCGG 3 cut(s) 692, 887, 1170
MunI CAATTG 2 cut(s) 744, 1134
Mva1269I GAATGC 6 cut(s) 143, 350, 515, 701, 896, 1091
MwoI GCNNNNNNNGC 4 cut(s) 68, 405, 611, 726
NdeI CATATG 1 cut(s) 337
NlaIII CATG 5 cut(s) 52, 77, 186, 278, 533
NlaIV GGNNCC 2 cut(s) 328, 389
NmuCI GTSAC 4 cut(s) 176, 584, 710, 905
NsiI ATGCAT 4 cut(s) 350, 701, 896, 1091
NspI RCATGY 2 cut(s) 278, 533
OliI CACNNNNGTG 1 cut(s) 382
PaqCI CACCTGC 2 cut(s) 197, 271
PciI ACATGT 1 cut(s) 274
PctI GAATGC 6 cut(s) 143, 350, 515, 701, 896, 1091
PfeI GAWTC 2 cut(s) 782, 977
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 4 cut(s) 61, 250, 476, 616
PleI GAGTC 3 cut(s) 173, 782, 977
PpsI GAGTC 3 cut(s) 173, 782, 977
PscI ACATGT 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 328, 389
PspPI GGNCC 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 644
RsaI GTAC 4 cut(s) 376, 544, 925, 1120
RsaNI GTAC 4 cut(s) 375, 543, 924, 1119
RseI CAYNNNNRTG 1 cut(s) 382
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 4 cut(s) 60, 249, 475, 615
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 3 cut(s) 173, 782, 977
SduI GDGCHC 3 cut(s) 73, 224, 1189
SfaNI GCATC 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 65
SsiI CCGC 4 cut(s) 414, 614, 815, 1158
SspMI CTAG 3 cut(s) 66, 1082, 1198
TaaI ACNGT 3 cut(s) 162, 234, 1114
TaiI ACGT 3 cut(s) 483, 575, 1038
TaqI TCGA 3 cut(s) 807, 897, 1002
TatI WGTACW 4 cut(s) 374, 542, 923, 1118
TauI GCSGC 1 cut(s) 617
TfiI GAWTC 2 cut(s) 782, 977
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 4 cut(s) 239, 675, 870, 1065
TseFI GTSAC 4 cut(s) 176, 584, 710, 905
TseI GCWGC 3 cut(s) 59, 248, 474
Tsp45I GTSAC 4 cut(s) 176, 584, 710, 905
TspDTI ATGAA 2 cut(s) 150, 624
TspRI CASTG 4 cut(s) 239, 675, 870, 1065
Tth111I GACNNNGTC 1 cut(s) 644
VneI GTGCAC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 147
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 2 cut(s) 278, 533
XspI CTAG 3 cut(s) 66, 1082, 1198
Zsp2I ATGCAT 4 cut(s) 350, 701, 896, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.