Rorug02G0313400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000954
Physical Location & Seq
Reverse (-)
37934757 .. 37935939
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0313400.1

Sequence Viewer

Length: 1137 bp
ATGCTCTCAAACCCTAGCCTCACCGGACCTTCTGACCTCTGTTCGATATCGGATCGGTTTCGATGTTTTGTCTGTGCACCGAAAGAAGATGATTGTCGTGGTTTGGCTCTCTTCTGGCGTAACGAGGTCCCTGTTCGCCTCAGGAATTATTCCGCTCACCATATTGATGCAGAAGTTGGCGCTCTTGGATCTCCAGGAGTCTTTCGTTTTACTGGCATCTATGGTGTAGCTACAACTGCGAATCGTATCATCACATGGAATCTACTGCGGACTCTGGCCACTCAGGTTCGTCTACCATGGCTTGTTGCTGGGGATTTCAACGAGATCCTTAATCATGCTGATAAATCTGGCGGTCCGCCTCGCTCTACTGCACAAATGGCTCGTTTCCGGCAAGCTTTGGTGGATTGTGAGTTAATCGATATGGGATTTGTCGGTCCTAGATTTACCTGGTCCAATAGGTTTACCAAGGAACGACTTGATCGAGCCTGCCAGAATGTACAATGGAGGGAACTCTACCCTTTCTCTAGATGCATCACTCTCCCTCTCAGTAGGTTTGATCACTGTCCTCTTCTCATTGAAATGTATCCGGAGCCAGCAATCCTAATTCGGACACCCAAACTTTTTCGCTTTGAGGAGATGTGGCTACAACATACGGATTGTATGAACGTGGTGCAGCAAGGGTGGATGCTTCCAACTATAGGGGAACCAATGATGCAGGTTGGTAGGAAAATAAAACAGACAGGTCAACTCCTATTGCGGTGGCATTCTGGAGTGTTTCAACAAAGACAAACTGAGATGAAGTTGATTCAGGGAAAATTGGATGATTTGATGAAGCAGAGTTTTGAGCCAGGTTATTTCGAAGTCCAAAAGGCCCTACAGTTTCGTCTCAATGAACTGCTTTCGGCTAATGAAATGTATTGGAGGCAGAGATCAAGAGTGCAATGGCTCAAGGATGGGGATCGTAACACGGCTTTCTTTCATCGGCGAGCCTCTAATAGAAGGTGTCGAAATCGGGTTAAAGGTTTGCTAAATGATGAAGGGCAGTGGACTGTCGATCAGGGGGAAGTTAATGAGCTCATTATCCAGTACTATGAAGCCATTTTTAGGGCTGGTGGTTCTGACCCGGCAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.81

Weight (kDa)

9.12

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 292
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 5 cut(s) 153, 268, 351, 356, 757
AclWI GGATC 4 cut(s) 60, 196, 319, 966
AcoI YGGCCR 1 cut(s) 276
AfaI GTAC 2 cut(s) 498, 1088
AfiI CCNNNNNNNGG 2 cut(s) 698, 1104
AgsI TTSAA 3 cut(s) 319, 578, 779
AjnI CCWGG 3 cut(s) 193, 446, 847
AluBI AGCT 4 cut(s) 230, 395, 1075, 1130
AluI AGCT 4 cut(s) 230, 395, 1075, 1130
Alw21I GWGCWC 2 cut(s) 79, 1077
Alw26I GTCTC 1 cut(s) 890
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 4 cut(s) 60, 196, 319, 966
Aor13HI TCCGGA 1 cut(s) 586
AoxI GGCC 2 cut(s) 276, 870
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 673, 1127, 1130
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 6 cut(s) 26, 127, 353, 434, 450, 871
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 2 cut(s) 13, 149
AsuII TTCGAA 1 cut(s) 858
AvaII GGWCC 5 cut(s) 26, 127, 353, 434, 450
AxyI CCTNAGG 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 278
BanII GRGCYC 1 cut(s) 1077
Bbv12I GWGCWC 2 cut(s) 79, 1077
BbvI GCAGC 2 cut(s) 685, 1117
BccI CCATC 1 cut(s) 947
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 3 cut(s) 195, 448, 849
BciVI GTATCC 1 cut(s) 594
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 3 cut(s) 15, 438, 525
BfmI CTRYAG 2 cut(s) 696, 875
BfoI RGCGCY 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 706
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 3 cut(s) 674, 1128, 1131
BlsI GCNGC 3 cut(s) 675, 1129, 1132
BmcAI AGTACT 1 cut(s) 1088
Bme1390I CCNGG 4 cut(s) 195, 448, 849, 1124
Bme18I GGWCC 5 cut(s) 26, 127, 353, 434, 450
BmgT120I GGNCC 6 cut(s) 26, 127, 353, 434, 450, 871
BmiI GGNNCC 3 cut(s) 129, 591, 705
BmrFI CCNGG 4 cut(s) 195, 448, 849, 1124
BmsI GCATC 6 cut(s) 157, 225, 518, 540, 675, 702
BpmI CTGGAG 2 cut(s) 177, 789
Bpu14I TTCGAA 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 1 cut(s) 1124
Bsa29I ATCGAT 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 296, 465
BsaWI WCCGGW 2 cut(s) 23, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 1104
Bse1I ACTGG 2 cut(s) 217, 1084
Bse21I CCTNAGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 947
Bse8I GATNNNNATC 1 cut(s) 957
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 3 cut(s) 195, 448, 849
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 296, 465
BseGI GGATG 3 cut(s) 690, 826, 958
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 2 cut(s) 698, 1104
BseMI GCAATG 1 cut(s) 947
BseMII CTCAG 4 cut(s) 154, 296, 559, 783
BseNI ACTGG 2 cut(s) 217, 1084
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 2 cut(s) 685, 1117
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 2 cut(s) 354, 692
BshFI GGCC 2 cut(s) 278, 872
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 79, 1077
BsiSI CCGG 4 cut(s) 24, 388, 587, 1124
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 698, 1104
BsmAI GTCTC 1 cut(s) 890
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 2 cut(s) 278, 872
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 2 cut(s) 79, 1077
Bsp13I TCCGGA 1 cut(s) 586
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 5 cut(s) 153, 268, 351, 356, 757
BspANI GGCC 2 cut(s) 278, 872
BspCNI CTCAG 4 cut(s) 153, 295, 558, 784
BspDI ATCGAT 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 586
BspLI GGNNCC 3 cut(s) 129, 591, 705
BspMI ACCTGC 1 cut(s) 706
BspPI GGATC 4 cut(s) 60, 196, 319, 966
BspT104I TTCGAA 1 cut(s) 858
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 2 cut(s) 217, 1084
BssECI CCNNGG 2 cut(s) 296, 465
BssMI GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
BssT1I CCWWGG 2 cut(s) 296, 465
Bst2UI CCWGG 3 cut(s) 195, 448, 849
Bst4CI ACNGT 3 cut(s) 563, 879, 1051
Bst6I CTCTTC 2 cut(s) 116, 573
BstAUI TGTACA 1 cut(s) 496
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 4 cut(s) 393, 487, 594, 987
BstDEI CTNAG 4 cut(s) 140, 282, 545, 792
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 690, 826, 958
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 8 cut(s) 55, 191, 327, 481, 559, 932, 961, 1057
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 236, 377
BstNI CCWGG 3 cut(s) 195, 448, 849
BstSCI CCNGG 4 cut(s) 193, 446, 847, 1122
BstSFI CTRYAG 2 cut(s) 696, 875
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 685, 1117
BstX2I RGATCY 2 cut(s) 188, 324
BstYI RGATCY 2 cut(s) 188, 324
Bsu15I ATCGAT 1 cut(s) 417
Bsu36I CCTNAGG 1 cut(s) 140
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 2 cut(s) 278, 872
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 3 cut(s) 690, 826, 958
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 2 cut(s) 559, 1049
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 4 cut(s) 393, 487, 594, 987
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 6 cut(s) 26, 127, 353, 434, 450, 871
ClaI ATCGAT 1 cut(s) 417
CpoI CGGWCCG 1 cut(s) 353
CsiI ACCWGGT 1 cut(s) 446
Csp6I GTAC 2 cut(s) 497, 1087
CspI CGGWCCG 1 cut(s) 353
CviAII CATG 3 cut(s) 255, 297, 335
CviQI GTAC 2 cut(s) 497, 1087
DdeI CTNAG 4 cut(s) 140, 282, 545, 792
DpnI GATC 8 cut(s) 54, 190, 326, 480, 558, 931, 960, 1056
DpnII GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 116, 573
EarI CTCTTC 2 cut(s) 116, 573
EciI GGCGGA 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 1075
Eco130I CCWWGG 2 cut(s) 296, 465
Eco24I GRGCYC 1 cut(s) 1077
Eco32I GATATC 1 cut(s) 48
Eco47I GGWCC 5 cut(s) 26, 127, 353, 434, 450
Eco53kI GAGCTC 1 cut(s) 1075
Eco81I CCTNAGG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 1075
EcoO109I RGGNCCY 2 cut(s) 127, 871
EcoRII CCWGG 3 cut(s) 193, 446, 847
EcoRV GATATC 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 296, 465
EcoT22I ATGCAT 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 1077
ErhI CCWWGG 2 cut(s) 296, 465
Esp3I CGTCTC 1 cut(s) 890
FaeI CATG 3 cut(s) 258, 300, 338
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 254, 296, 334
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 674, 1128, 1131
FokI GGATG 3 cut(s) 697, 833, 965
FriOI GRGCYC 1 cut(s) 1077
Fsp4HI GCNGC 3 cut(s) 674, 1128, 1131
FspBI CTAG 3 cut(s) 15, 438, 525
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 674, 1128, 1131
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 2 cut(s) 177, 789
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 278, 872
HapII CCGG 4 cut(s) 24, 388, 587, 1124
HhaI GCGC 1 cut(s) 182
Hin1II CATG 3 cut(s) 258, 300, 338
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 746
HindII GTYRAC 1 cut(s) 746
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 5 cut(s) 198, 241, 259, 271, 805
HpaII CCGG 4 cut(s) 24, 388, 587, 1124
HphI GGTGA 2 cut(s) 13, 149
Hpy166II GTNNAC 5 cut(s) 77, 293, 462, 746, 1047
Hpy188I TCNGA 4 cut(s) 34, 52, 609, 1120
Hpy188III TCNNGA 5 cut(s) 142, 525, 587, 768, 933
Hpy8I GTNNAC 5 cut(s) 77, 293, 462, 746, 1047
HpyAV CCTTC 3 cut(s) 39, 993, 1031
HpyCH4III ACNGT 3 cut(s) 563, 879, 1051
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 8 cut(s) 77, 170, 371, 531, 673, 715, 940, 1133
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 377
HpyF3I CTNAG 4 cut(s) 140, 282, 545, 792
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 3 cut(s) 258, 300, 338
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 2 cut(s) 685, 1117
LweI GCATC 6 cut(s) 157, 225, 518, 540, 675, 702
MabI ACCWGGT 1 cut(s) 446
MaeI CTAG 3 cut(s) 15, 438, 525
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 2 cut(s) 119, 962
MalI GATC 8 cut(s) 54, 190, 326, 480, 558, 931, 960, 1056
MbiI CCGCTC 1 cut(s) 155
MboI GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
MboII GAAGA 3 cut(s) 98, 103, 560
MflI RGATCY 2 cut(s) 188, 324
MhlI GDGCHC 2 cut(s) 79, 1077
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 3 cut(s) 145, 603, 815
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 2 cut(s) 207, 265
MmeI TCCRAC 1 cut(s) 716
Mox20I TGGCCA 1 cut(s) 278
Mph1103I ATGCAT 1 cut(s) 533
MroI TCCGGA 1 cut(s) 586
MscI TGGCCA 1 cut(s) 278
MseI TTAA 4 cut(s) 330, 413, 1017, 1068
MslI CAYNNNNRTG 2 cut(s) 165, 578
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 1130
MspI CCGG 4 cut(s) 24, 388, 587, 1124
MspR9I CCNGG 4 cut(s) 195, 448, 849, 1124
Mva1269I GAATGC 1 cut(s) 763
MvaI CCWGG 3 cut(s) 195, 448, 849
MwoI GCNNNNNNNGC 2 cut(s) 236, 377
NciI CCSGG 1 cut(s) 1124
NcoI CCATGG 1 cut(s) 296
NdeII GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
NlaIII CATG 3 cut(s) 258, 300, 338
NlaIV GGNNCC 3 cut(s) 129, 591, 705
NsiI ATGCAT 1 cut(s) 533
NspV TTCGAA 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 3 cut(s) 241, 259, 805
PfoI TCCNGGA 1 cut(s) 193
PkrI GCNGC 3 cut(s) 675, 1129, 1132
PleI GAGTC 2 cut(s) 206, 265
PpsI GAGTC 2 cut(s) 206, 265
PpuMI RGGWCCY 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 3 cut(s) 193, 446, 847
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 3 cut(s) 193, 446, 847
PspN4I GGNNCC 3 cut(s) 129, 591, 705
PspPI GGNCC 6 cut(s) 26, 127, 353, 434, 450, 871
PspPPI RGGWCCY 1 cut(s) 127
PsuI RGATCY 2 cut(s) 188, 324
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 2 cut(s) 498, 1088
RsaNI GTAC 2 cut(s) 497, 1087
RseI CAYNNNNRTG 2 cut(s) 165, 578
Rsr2I CGGWCCG 1 cut(s) 353
RsrII CGGWCCG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 1077
SaqAI TTAA 4 cut(s) 330, 413, 1017, 1068
SatI GCNGC 3 cut(s) 674, 1128, 1131
Sau3AI GATC 8 cut(s) 52, 188, 324, 478, 556, 929, 958, 1054
Sau96I GGNCC 6 cut(s) 26, 127, 353, 434, 450, 871
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 2 cut(s) 207, 265
ScrFI CCNGG 4 cut(s) 195, 448, 849, 1124
SduI GDGCHC 2 cut(s) 79, 1077
SexAI ACCWGGT 1 cut(s) 446
SfaNI GCATC 6 cut(s) 157, 225, 518, 540, 675, 702
SfcI CTRYAG 2 cut(s) 696, 875
SfuI TTCGAA 1 cut(s) 858
SinI GGWCC 5 cut(s) 26, 127, 353, 434, 450
SmiMI CAYNNNNRTG 2 cut(s) 165, 578
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
Sse9I AATT 3 cut(s) 145, 603, 815
SsiI CCGC 5 cut(s) 153, 268, 351, 356, 757
SspMI CTAG 3 cut(s) 15, 438, 525
SstI GAGCTC 1 cut(s) 1077
StyD4I CCNGG 4 cut(s) 193, 446, 847, 1122
StyI CCWWGG 2 cut(s) 296, 465
TaaI ACNGT 3 cut(s) 563, 879, 1051
TaiI ACGT 1 cut(s) 669
TaqI TCGA 7 cut(s) 44, 61, 417, 481, 858, 1006, 1053
TaqII GACCGA 1 cut(s) 422
TasI AATT 3 cut(s) 145, 603, 815
TatI WGTACW 2 cut(s) 496, 1086
TfiI GAWTC 3 cut(s) 241, 259, 805
Tru1I TTAA 4 cut(s) 330, 413, 1017, 1068
Tru9I TTAA 4 cut(s) 330, 413, 1017, 1068
TscAI CASTG 2 cut(s) 566, 1049
TseI GCWGC 3 cut(s) 673, 1127, 1130
TspDTI ATGAA 8 cut(s) 677, 812, 845, 906, 924, 968, 1050, 1107
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 2 cut(s) 566, 1049
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 5 cut(s) 26, 127, 353, 434, 450
XbaI TCTAGA 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 3 cut(s) 15, 438, 525
ZrmI AGTACT 1 cut(s) 1088
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.