Rroxscaffold_6G00420660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000954
Physical Location & Seq
Reverse (-)
41837632 .. 41840111
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420660.1

Sequence Viewer

Length: 639 bp
ATGTTTTTGTACACGAATGTGGCCCCTGAGAGCAATGTGTGCATTTGCGGAGACAACAACAAGTCCAAGAAGCCAGTTGCTTTAGTCCAAGAAGCGAAAATGAGTAGCAGCAACGTGAAATCAGAGATAATGCCATATTCAGAATGCCAGAAAAACTGCAAGCATGTTTGCGCTTGTACACTAATTTGGCCACCTGAACTCTCAACGTGCGTTTGTGGTGACTACATCAAATCATCAGCCAATAAAGCGGCTGAAGAATTGCATAAAGAATCGGACTTGGTCTCCAAGCCAGTTGCAAAATCAGTAGGAGGCTTTATTCCATATCCAGAATGCATCGAAAAATGTGATGAGTGTGTAATTTGTACAAAAAATTGGCCAATGGAGAAAGTATTGTGCTATTGTGGTAAAAAGACTGATTCCGACTCCAGGAAGCCAGCAATCGAATATGCAGAAAAATTGCTTACAGAATTGGACGTAGCCAAACCTGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCAGAATGCATAGAGAAATGTGATGAGTGTACAATATGTACACGTATTTATCCAATTGAGAAAGCATTGTGCTATTGCGGTAAGAAGACCGAAGTTGAAGGCAGAGCCCTCCCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.43

Weight (kDa)

6.2

Isoelectric Point (pI)

67.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 48, 248, 597
AcoI YGGCCR 2 cut(s) 188, 374
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 5 cut(s) 11, 178, 364, 550, 559
AfiI CCNNNNNNNGG 1 cut(s) 426
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 1 cut(s) 617
AjnI CCWGG 1 cut(s) 425
AleI CACNNNNGTG 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 45, 286
AoxI GGCC 3 cut(s) 21, 188, 374
ApeKI GCWGC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 230
BalI TGGCCA 2 cut(s) 190, 376
BanII GRGCYC 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 45, 286
BfaI CTAG 1 cut(s) 637
BisI GCNGC 2 cut(s) 109, 249
BlsI GCNGC 2 cut(s) 110, 250
Bme1390I CCNGG 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 611
BpmI CTGGAG 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 74, 290
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 74, 290
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 3 cut(s) 23, 190, 376
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 2 cut(s) 45, 286
BsmI GAATGC 3 cut(s) 149, 335, 530
BsnI GGCC 3 cut(s) 23, 190, 376
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 628
Bsp1407I TGTACA 5 cut(s) 9, 176, 362, 548, 557
BspACI CCGC 3 cut(s) 48, 248, 597
BspANI GGCC 3 cut(s) 23, 190, 376
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 40
BsrGI TGTACA 5 cut(s) 9, 176, 362, 548, 557
BsrI ACTGG 2 cut(s) 74, 290
Bst2UI CCWGG 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 39
BstAUI TGTACA 5 cut(s) 9, 176, 362, 548, 557
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 161, 435
BstDEI CTNAG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 173
BstMAI GTCTC 2 cut(s) 45, 286
BstMWI GCNNNNNNNGC 2 cut(s) 39, 245
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 3 cut(s) 23, 190, 376
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 161, 435
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 5 cut(s) 10, 177, 363, 549, 558
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 1 cut(s) 164
CviQI GTAC 5 cut(s) 10, 177, 363, 549, 558
DdeI CTNAG 1 cut(s) 27
EaeI YGGCCR 2 cut(s) 188, 374
Eco24I GRGCYC 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 425
EcoT22I ATGCAT 2 cut(s) 335, 530
EcoT38I GRGCYC 1 cut(s) 628
FaeI CATG 1 cut(s) 167
FaiI YATR 8 cut(s) 136, 165, 264, 322, 447, 517, 530, 556
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 109, 249
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 2 cut(s) 109, 249
FspBI CTAG 1 cut(s) 637
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 109, 249
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 3 cut(s) 23, 190, 376
HhaI GCGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 3 cut(s) 269, 416, 422
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 4 cut(s) 12, 179, 549, 560
Hpy188I TCNGA 4 cut(s) 124, 142, 274, 421
Hpy188III TCNNGA 2 cut(s) 326, 521
Hpy8I GTNNAC 4 cut(s) 12, 179, 549, 560
HpyAV CCTTC 1 cut(s) 611
HpyCH4IV ACGT 4 cut(s) 114, 206, 474, 562
HpyCH4V TGCA 8 cut(s) 42, 159, 262, 296, 333, 449, 491, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 245
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 4 cut(s) 114, 206, 474, 562
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 171
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 342
MaeI CTAG 1 cut(s) 637
MaeII ACGT 4 cut(s) 114, 206, 474, 562
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 2 cut(s) 266, 616
MfeI CAATTG 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 628
MlsI TGGCCA 2 cut(s) 190, 376
MluCI AATT 7 cut(s) 183, 257, 357, 370, 455, 467, 573
MluNI TGGCCA 2 cut(s) 190, 376
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 3 cut(s) 302, 497, 638
Mox20I TGGCCA 2 cut(s) 190, 376
Mph1103I ATGCAT 2 cut(s) 335, 530
MscI TGGCCA 2 cut(s) 190, 376
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 2 cut(s) 190, 376
MspR9I CCNGG 1 cut(s) 427
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 3 cut(s) 149, 335, 530
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 39, 245
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 2 cut(s) 335, 530
NspI RCATGY 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 17
PctI GAATGC 3 cut(s) 149, 335, 530
PfeI GAWTC 2 cut(s) 269, 416
PflFI GACNNNGTC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 425
PkrI GCNGC 2 cut(s) 110, 250
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
Ppu21I YACGTR 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 5 cut(s) 11, 178, 364, 550, 559
RsaNI GTAC 5 cut(s) 10, 177, 363, 549, 558
RseI CAYNNNNRTG 1 cut(s) 17
SatI GCNGC 2 cut(s) 109, 249
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 628
SetI ASST 6 cut(s) 117, 196, 209, 477, 487, 565
SfaNI GCATC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 7 cut(s) 183, 257, 357, 370, 455, 467, 573
SsiI CCGC 3 cut(s) 48, 248, 597
SspMI CTAG 1 cut(s) 637
StyD4I CCNGG 1 cut(s) 425
TaiI ACGT 4 cut(s) 117, 209, 477, 565
TaqI TCGA 2 cut(s) 336, 441
TaqII GACCGA 1 cut(s) 623
TasI AATT 7 cut(s) 183, 257, 357, 370, 455, 467, 573
TatI WGTACW 5 cut(s) 9, 176, 362, 548, 557
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 269, 416
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 218
TspRI CASTG 1 cut(s) 504
Tth111I GACNNNGTC 1 cut(s) 278
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 637
Zsp2I ATGCAT 2 cut(s) 335, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.