Rh2AG366700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000954
Physical Location & Seq
Reverse (-)
54418793 .. 54422125
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG366700.1

Sequence Viewer

Length: 1353 bp
ATGAGTTTCAGAGATATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACAAATACTCATGCTCGCTTAGATCTATTTGGCCACCAGCTGCTTACCTCCAAGAGCCAACCACATCCCAATTCTGAAGAAGCGGATATGCTCAAATCAGCAACCACTAAAGCGGCCGAAAAATTGATGAAGGTAGCAACTGTAGTCCAAGAAGAGAAATCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAAGAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATCTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCAGCTATAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAGTTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATCTGTGCTGGATCAAGCAAATTATCAACTACTAAAGCGGCCGAAAATTTGCTTAACCCAGCTGCTGTAGTCCAAGAAGAGAAACTGAGTAGCAGCATAGTGAAAGCAGACACAATTCCATATTCAGAATGCCAGGAAAGCTGCAAGTATACATGTGCTTGCACACTTATTTGGCCACCTGAACTGTCACAGTGCATTTGTGTTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGAAGCAGCATAGTGAAAGCAGATACAATTTCATATTCAGAATGCCAGGAAAGCTGCAAGTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGTATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAATCGAGTACTAGCATAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAGCTGCAAGTATACATGTGTTTGCACACTTATTTGGCCACCTGAATTATCACAGTGCTTTTGTGCTGGATCAAACAAATTATCAACCACTAAAGAAGCCGAAAAATTGCATAAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACTAGAGTTTATCCGATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGGCATAGCCCTCCCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

450

Amino Acids

48.91

Weight (kDa)

5.56

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 677, 872, 1067
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 7 cut(s) 146, 176, 371, 566, 761, 956, 1289
AclWI GGATC 5 cut(s) 352, 547, 742, 937, 1132
AcsI RAATTY 4 cut(s) 379, 574, 769, 964
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 1009
AflII CTTAAG 3 cut(s) 386, 776, 971
AflIII ACRYGT 5 cut(s) 290, 485, 680, 875, 1070
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 1183
AjnI CCWGG 4 cut(s) 465, 660, 855, 1050
AluBI AGCT 9 cut(s) 103, 398, 590, 669, 785, 864, 980, 1059, 1215
AluI AGCT 9 cut(s) 103, 398, 590, 669, 785, 864, 980, 1059, 1215
AlwI GGATC 5 cut(s) 352, 547, 742, 937, 1132
AlwNI CAGNNNCTG 3 cut(s) 593, 788, 983
Aor13HI TCCGGA 1 cut(s) 1228
ApoI RAATTY 4 cut(s) 379, 574, 769, 964
BalI TGGCCA 6 cut(s) 96, 313, 508, 703, 898, 1093
BccI CCATC 1 cut(s) 1324
BciT130I CCWGG 4 cut(s) 467, 662, 857, 1052
BfaI CTAG 3 cut(s) 1011, 1269, 1351
BfmI CTRYAG 5 cut(s) 204, 399, 594, 789, 984
BfrI CTTAAG 3 cut(s) 386, 776, 971
BglII AGATCT 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 1009
Bme1390I CCNGG 4 cut(s) 467, 662, 857, 1052
BmeRI GACNNNNNGTC 1 cut(s) 1183
BmrFI CCNGG 4 cut(s) 467, 662, 857, 1052
BmsI GCATC 3 cut(s) 342, 537, 1245
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 1228
Bse1I ACTGG 1 cut(s) 1193
BseAI TCCGGA 1 cut(s) 1228
BseBI CCWGG 4 cut(s) 467, 662, 857, 1052
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 1193
BseX3I CGGCCG 5 cut(s) 177, 372, 567, 762, 957
BseYI CCCAGC 1 cut(s) 586
BsgI GTGCAG 1 cut(s) 1249
Bsh1285I CGRYCG 5 cut(s) 180, 375, 570, 765, 960
BsiEI CGRYCG 5 cut(s) 180, 375, 570, 765, 960
BsiSI CCGG 1 cut(s) 1229
BsmI GAATGC 6 cut(s) 272, 467, 662, 857, 1052, 1238
Bsp13I TCCGGA 1 cut(s) 1228
Bsp143I GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 7 cut(s) 146, 176, 371, 566, 761, 956, 1289
BspCNI CTCAG 1 cut(s) 606
BspEI TCCGGA 1 cut(s) 1228
BspPI GGATC 5 cut(s) 352, 547, 742, 937, 1132
BspTI CTTAAG 3 cut(s) 386, 776, 971
BsrI ACTGG 1 cut(s) 1193
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
BssNAI GTATAC 3 cut(s) 678, 873, 1068
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 3 cut(s) 678, 873, 1068
Bst2UI CCWGG 4 cut(s) 467, 662, 857, 1052
Bst4CI ACNGT 7 cut(s) 205, 330, 525, 714, 720, 915, 1110
Bst6I CTCTTC 5 cut(s) 210, 405, 600, 795, 990
BstAFI CTTAAG 3 cut(s) 386, 776, 971
BstC8I GCNNGC 6 cut(s) 45, 79, 393, 688, 783, 978
BstDEI CTNAG 2 cut(s) 82, 614
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 6 cut(s) 88, 347, 542, 737, 932, 1127
BstMBI GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
BstMCI CGRYCG 5 cut(s) 180, 375, 570, 765, 960
BstMWI GCNNNNNNNGC 5 cut(s) 59, 666, 861, 1056, 1305
BstNI CCWGG 4 cut(s) 467, 662, 857, 1052
BstNSI RCATGY 5 cut(s) 294, 489, 684, 879, 1074
BstSCI CCNGG 4 cut(s) 465, 660, 855, 1050
BstSFI CTRYAG 5 cut(s) 204, 399, 594, 789, 984
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 85
BstZ17I GTATAC 3 cut(s) 678, 873, 1068
BstZI CGGCCG 5 cut(s) 177, 372, 567, 762, 957
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 5 cut(s) 335, 530, 725, 920, 1115
Cac8I GCNNGC 6 cut(s) 45, 79, 393, 688, 783, 978
CaiI CAGNNNCTG 3 cut(s) 593, 788, 983
Csp6I GTAC 1 cut(s) 1008
CviAII CATG 8 cut(s) 49, 74, 291, 486, 681, 876, 1071, 1309
CviQI GTAC 1 cut(s) 1008
DdeI CTNAG 2 cut(s) 82, 614
DpnI GATC 6 cut(s) 87, 346, 541, 736, 931, 1126
DpnII GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
DriI GACNNNNNGTC 1 cut(s) 1183
EagI CGGCCG 5 cut(s) 177, 372, 567, 762, 957
Eam1104I CTCTTC 5 cut(s) 210, 405, 600, 795, 990
Eam1105I GACNNNNNGTC 1 cut(s) 1183
EarI CTCTTC 5 cut(s) 210, 405, 600, 795, 990
EclXI CGGCCG 5 cut(s) 177, 372, 567, 762, 957
Eco130I CCWWGG 1 cut(s) 48
Eco52I CGGCCG 5 cut(s) 177, 372, 567, 762, 957
Eco57I CTGAAG 1 cut(s) 159
EcoRII CCWGG 4 cut(s) 465, 660, 855, 1050
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 1238
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 8 cut(s) 52, 77, 294, 489, 684, 879, 1074, 1312
FatI CATG 8 cut(s) 48, 73, 290, 485, 680, 875, 1070, 1308
FblI GTMKAC 3 cut(s) 677, 872, 1067
FokI GGATG 1 cut(s) 114
FspBI CTAG 3 cut(s) 1011, 1269, 1351
GsaI CCCAGC 1 cut(s) 590
HapII CCGG 1 cut(s) 1229
Hin1II CATG 8 cut(s) 52, 77, 294, 489, 684, 879, 1074, 1312
HindIII AAGCTT 1 cut(s) 1213
HinfI GANTC 1 cut(s) 1312
HpaII CCGG 1 cut(s) 1229
Hpy166II GTNNAC 3 cut(s) 678, 873, 1068
Hpy188I TCNGA 9 cut(s) 11, 139, 265, 460, 655, 850, 1045, 1281, 1326
Hpy188III TCNNGA 1 cut(s) 1229
Hpy8I GTNNAC 3 cut(s) 678, 873, 1068
HpyAV CCTTC 2 cut(s) 187, 1202
HpyCH4III ACNGT 7 cut(s) 205, 330, 525, 714, 720, 915, 1110
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 666, 861, 1056, 1305
HpyF3I CTNAG 2 cut(s) 82, 614
Hsp92II CATG 8 cut(s) 52, 77, 294, 489, 684, 879, 1074, 1312
Kpn2I TCCGGA 1 cut(s) 1228
Kzo9I GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
LweI GCATC 3 cut(s) 342, 537, 1245
MaeI CTAG 3 cut(s) 1011, 1269, 1351
MaeIII GTNAC 1 cut(s) 714
MalI GATC 6 cut(s) 87, 346, 541, 736, 931, 1126
MboI GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
MboII GAAGA 7 cut(s) 152, 227, 422, 617, 812, 1007, 1211
MflI RGATCY 1 cut(s) 85
MlsI TGGCCA 6 cut(s) 96, 313, 508, 703, 898, 1093
MluNI TGGCCA 6 cut(s) 96, 313, 508, 703, 898, 1093
MmeI TCCRAC 1 cut(s) 712
MnlI CCTC 3 cut(s) 121, 1279, 1352
Mox20I TGGCCA 6 cut(s) 96, 313, 508, 703, 898, 1093
Mph1103I ATGCAT 1 cut(s) 1238
MroI TCCGGA 1 cut(s) 1228
MscI TGGCCA 6 cut(s) 96, 313, 508, 703, 898, 1093
MseI TTAA 5 cut(s) 35, 387, 582, 777, 972
Msp20I TGGCCA 6 cut(s) 96, 313, 508, 703, 898, 1093
MspA1I CMGCKG 4 cut(s) 103, 590, 785, 980
MspCI CTTAAG 3 cut(s) 386, 776, 971
MspI CCGG 1 cut(s) 1229
MspR9I CCNGG 4 cut(s) 467, 662, 857, 1052
Mva1269I GAATGC 6 cut(s) 272, 467, 662, 857, 1052, 1238
MvaI CCWGG 4 cut(s) 467, 662, 857, 1052
MwoI GCNNNNNNNGC 5 cut(s) 59, 666, 861, 1056, 1305
NcoI CCATGG 1 cut(s) 48
NdeII GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
NlaIII CATG 8 cut(s) 52, 77, 294, 489, 684, 879, 1074, 1312
NmuCI GTSAC 1 cut(s) 714
NsiI ATGCAT 1 cut(s) 1238
NspI RCATGY 5 cut(s) 294, 489, 684, 879, 1074
PciI ACATGT 5 cut(s) 290, 485, 680, 875, 1070
PctI GAATGC 6 cut(s) 272, 467, 662, 857, 1052, 1238
PfeI GAWTC 1 cut(s) 1312
PscI ACATGT 5 cut(s) 290, 485, 680, 875, 1070
Psp6I CCWGG 4 cut(s) 465, 660, 855, 1050
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 4 cut(s) 465, 660, 855, 1050
PstNI CAGNNNCTG 3 cut(s) 593, 788, 983
PsuI RGATCY 1 cut(s) 85
PvuII CAGCTG 4 cut(s) 103, 590, 785, 980
RsaI GTAC 1 cut(s) 1009
RsaNI GTAC 1 cut(s) 1008
SaqAI TTAA 5 cut(s) 35, 387, 582, 777, 972
Sau3AI GATC 6 cut(s) 85, 344, 539, 734, 929, 1124
ScaI AGTACT 1 cut(s) 1009
ScrFI CCNGG 4 cut(s) 467, 662, 857, 1052
SfaNI GCATC 3 cut(s) 342, 537, 1245
SfcI CTRYAG 5 cut(s) 204, 399, 594, 789, 984
SmlI CTYRAG 3 cut(s) 386, 776, 971
SmoI CTYRAG 3 cut(s) 386, 776, 971
SsiI CCGC 7 cut(s) 146, 176, 371, 566, 761, 956, 1289
SspMI CTAG 3 cut(s) 1011, 1269, 1351
StyD4I CCNGG 4 cut(s) 465, 660, 855, 1050
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 7 cut(s) 205, 330, 525, 714, 720, 915, 1110
TaqI TCGA 3 cut(s) 224, 1004, 1239
TatI WGTACW 1 cut(s) 1007
TauI GCSGC 6 cut(s) 179, 374, 569, 764, 959, 1292
TfiI GAWTC 1 cut(s) 1312
Tru1I TTAA 5 cut(s) 35, 387, 582, 777, 972
Tru9I TTAA 5 cut(s) 35, 387, 582, 777, 972
TscAI CASTG 5 cut(s) 335, 530, 725, 920, 1115
TseFI GTSAC 1 cut(s) 714
Tsp45I GTSAC 1 cut(s) 714
TspDTI ATGAA 3 cut(s) 206, 831, 1325
TspRI CASTG 5 cut(s) 335, 530, 725, 920, 1115
Vha464I CTTAAG 3 cut(s) 386, 776, 971
XapI RAATTY 4 cut(s) 379, 574, 769, 964
XceI RCATGY 5 cut(s) 294, 489, 684, 879, 1074
XmiI GTMKAC 3 cut(s) 677, 872, 1067
XspI CTAG 3 cut(s) 1011, 1269, 1351
ZrmI AGTACT 1 cut(s) 1009
Zsp2I ATGCAT 1 cut(s) 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.