Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Reverse (-)

47306677 .. 47308981

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGTTTCAGAAATATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACAAATACTCATGCTCGCTTAGATCTATTTGGCCACCAGCTGCTTACCTCCAAGAGCCAACCAGATCCCAATTATGAAGAAGCAGAGATGCTCAAATCAGCAACCACTAAAGAGGCCGAAAAATTGATGAAGGCAGCAGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCAAAGTGAAAGCAGACACAATTCCATATTCAGAATGCCAGGAAACCTGCAACTATACATGTGCTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAAATTGCATAAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACTAGAGTTTATCCGATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGGTAACAATCTTAATTATTTTAACACGTGCTTAATTAAATTTGATTATATAGCTGCTAATTACAGTTACTTGTTTCCTTTTTTGTTACTGGAGATGCAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.34

Weight (kDa)

5.7

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	2 cut(s)	371, 509
AclWI	GGATC	2 cut(s)	122, 352
AcoI	YGGCCR	3 cut(s)	94, 311, 372
AcsI	RAATTY	1 cut(s)	590
AcvI	CACGTG	1 cut(s)	579
AflIII	ACRYGT	2 cut(s)	290, 576
AgsI	TTSAA	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	4 cut(s)	103, 203, 435, 605
AluI	AGCT	4 cut(s)	103, 203, 435, 605
AlwI	GGATC	2 cut(s)	122, 352
AlwNI	CAGNNNCTG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	4 cut(s)	94, 177, 311, 372
ApeKI	GCWGC	6 cut(s)	59, 103, 197, 200, 231, 605
ApoI	RAATTY	1 cut(s)	590
BalI	TGGCCA	2 cut(s)	96, 313
BbrPI	CACGTG	1 cut(s)	579
BbvI	GCAGC	6 cut(s)	71, 90, 209, 212, 243, 592
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	8 cut(s)	60, 104, 198, 201, 232, 372, 510, 606
BlsI	GCNGC	8 cut(s)	61, 105, 199, 202, 233, 373, 511, 607
Bme1390I	CCNGG	1 cut(s)	272
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	3 cut(s)	141, 465, 636
BsaAI	YACGTR	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	413, 645
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	413, 645
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	6 cut(s)	71, 90, 209, 212, 243, 592
BsgI	GTGCAG	1 cut(s)	469
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	96, 179, 313, 374
BsiEI	CGRYCG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	449
BsmI	GAATGC	2 cut(s)	272, 458
BsnI	GGCC	4 cut(s)	96, 179, 313, 374
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	85, 127, 344
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	2 cut(s)	371, 509
BspANI	GGCC	4 cut(s)	96, 179, 313, 374
BspEI	TCCGGA	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	122, 352
BsrI	ACTGG	2 cut(s)	413, 645
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	3 cut(s)	85, 127, 344
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	330, 617
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	45, 79, 298, 651
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	88, 130, 347
BstMBI	GATC	3 cut(s)	85, 127, 344
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 525
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	6 cut(s)	71, 90, 209, 212, 243, 592
BstX2I	RGATCY	2 cut(s)	85, 127
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	85, 127
BstZI	CGGCCG	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	96, 179, 313, 374
BtgI	CCRYGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	335
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	4 cut(s)	45, 79, 298, 651
CaiI	CAGNNNCTG	1 cut(s)	203
CviAII	CATG	4 cut(s)	49, 74, 291, 529
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	3 cut(s)	87, 129, 346
DpnII	GATC	3 cut(s)	85, 127, 344
DriI	GACNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	3 cut(s)	94, 311, 372
EagI	CGGCCG	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	210
EclXI	CGGCCG	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	48
Eco52I	CGGCCG	1 cut(s)	372
Eco72I	CACGTG	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	52, 77, 294, 532
FatI	CATG	4 cut(s)	48, 73, 290, 528
Fnu4HI	GCNGC	8 cut(s)	60, 104, 198, 201, 232, 372, 510, 606
Fsp4HI	GCNGC	8 cut(s)	60, 104, 198, 201, 232, 372, 510, 606
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	8 cut(s)	60, 104, 198, 201, 232, 372, 510, 606
HaeIII	GGCC	4 cut(s)	96, 179, 313, 374
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	4 cut(s)	52, 77, 294, 532
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	1 cut(s)	532
HpaII	CCGG	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	11, 265, 501, 546
Hpy188III	TCNNGA	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	187, 422
HpyCH4III	ACNGT	2 cut(s)	330, 617
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	8 cut(s)	282, 300, 333, 385, 419, 456, 486, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 525
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	4 cut(s)	52, 77, 294, 532
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	85, 127, 344
Lsp1109I	GCAGC	6 cut(s)	71, 90, 209, 212, 243, 592
LweI	GCATC	3 cut(s)	141, 465, 636
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	3 cut(s)	554, 617, 636
MalI	GATC	3 cut(s)	87, 129, 346
MboI	GATC	3 cut(s)	85, 127, 344
MboII	GAAGA	3 cut(s)	152, 227, 431
MflI	RGATCY	2 cut(s)	85, 127
MlsI	TGGCCA	2 cut(s)	96, 313
MluNI	TGGCCA	2 cut(s)	96, 313
MnlI	CCTC	3 cut(s)	121, 169, 499
Mox20I	TGGCCA	2 cut(s)	96, 313
Mph1103I	ATGCAT	1 cut(s)	458
MroI	TCCGGA	1 cut(s)	448
MscI	TGGCCA	2 cut(s)	96, 313
MseI	TTAA	5 cut(s)	35, 564, 573, 584, 588
Msp20I	TGGCCA	2 cut(s)	96, 313
MspA1I	CMGCKG	2 cut(s)	103, 203
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	2 cut(s)	272, 458
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	59, 525
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	85, 127, 344
NlaIII	CATG	4 cut(s)	52, 77, 294, 532
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	1 cut(s)	294
PacI	TTAATTAA	1 cut(s)	588
PciI	ACATGT	1 cut(s)	290
PctI	GAATGC	2 cut(s)	272, 458
PfeI	GAWTC	1 cut(s)	532
PkrI	GCNGC	8 cut(s)	61, 105, 199, 202, 233, 373, 511, 607
PmaCI	CACGTG	1 cut(s)	579
PmlI	CACGTG	1 cut(s)	579
Ppu21I	YACGTR	1 cut(s)	579
PscI	ACATGT	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	85, 127
PvuII	CAGCTG	2 cut(s)	103, 203
SaqAI	TTAA	5 cut(s)	35, 564, 573, 584, 588
SatI	GCNGC	8 cut(s)	60, 104, 198, 201, 232, 372, 510, 606
Sau3AI	GATC	3 cut(s)	85, 127, 344
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	8 cut(s)	105, 113, 205, 281, 319, 437, 581, 607
SfaNI	GCATC	3 cut(s)	141, 465, 636
SfcI	CTRYAG	1 cut(s)	204
SsiI	CCGC	2 cut(s)	371, 509
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	330, 617
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	459
TauI	GCSGC	2 cut(s)	374, 512
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	5 cut(s)	35, 564, 573, 584, 588
Tru9I	TTAA	5 cut(s)	35, 564, 573, 584, 588
TscAI	CASTG	1 cut(s)	335
TseI	GCWGC	6 cut(s)	59, 103, 197, 200, 231, 605
TspDTI	ATGAA	3 cut(s)	153, 206, 545
TspRI	CASTG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.