Rw3G007730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000954
Physical Location & Seq
Forward (+)
7181816 .. 7183726
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007730.1

Sequence Viewer

Length: 990 bp
ATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCGTGACATTGGCAGCAACTAGTGCTCATGCTCGCTTAGACCTATTTGGCCAGCTCCTTACCTCCAAGAACCAGCCAGACCCTAATTCGGAATGCCAGAAAATTCCATATCTACTGTGCGGCCGTGTCTGTGACGCTTGCGTTTGCGATAGGCGTGTGGCAGAGCTTGCAGAGTGCTTTTGCGGAAAGTGGAAACCATTTGCAGAACTCCAAAAATATGACGGAGCACAAGTGCAGGTGATAGAAAAAGAAAAATCAGATATTGAAGTTGAGTCTTCAGGCACCATTCCTTATACAGAGTGCATAAAAACTTGCGATAAATGTTTTTGTACACGAATGTGGCCCCCTGAGAGCAATGTGTGCATTTGCGGAGACAACGACGAGTCCAAGAAGCCAGTTGCTTTAGTCCAAGAAGCGAAAATGAGTAGCAGCAACGTGAAATCAGAGATAATGAATTATTCAGACTGCCAGAAAAACTGCAAGCATGTATGCGCTTGTACACTAATTTGGCCACCTGAACTATCAACGTGCGTTTGTGGTGACTACATCAAATCATCAGCCAATAAAGCGGCCGAAGAATTGCATAAAGAATTGGACTTGGTCTCCAAGCCAATTGCAAAATCAGTAGGAGGCTTTATTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATTTGTACAAAAAATTTGCCAATGGAGAAAGTATTGTGCTATTGTGGTAAAAAGACTGATTCCGACTCCAAGAAGCCAACAATCGAATATGCAGAAAAATTACTTCCAGAAGTGGACATAGCCAAACCAGTTGCAAAATCAGTGGGAGGCTTTATTCCATATCCAGAATGCATAGAGAAATGTGATGAGTGTACAATATGTACACGTATTTATCCAATTGAGAAAGCATTGTGCTATTGCGGTAAGAAGACCGGAGCTGAAGCCAGAGCCCTCCCCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

36.38

Weight (kDa)

5.67

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 5 cut(s) 150, 213, 399, 599, 948
AcoI YGGCCR 4 cut(s) 79, 151, 539, 600
AcsI RAATTY 2 cut(s) 132, 721
AcuI CTGAAG 2 cut(s) 291, 987
AfaI GTAC 5 cut(s) 361, 529, 715, 901, 910
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 911
AgsI TTSAA 2 cut(s) 7, 296
AhlI ACTAGT 1 cut(s) 50
AleI CACNNNNGTG 1 cut(s) 367
AluBI AGCT 3 cut(s) 85, 196, 965
AluI AGCT 3 cut(s) 85, 196, 965
Alw21I GWGCWC 2 cut(s) 58, 259
Alw26I GTCTC 2 cut(s) 396, 637
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 5 cut(s) 79, 151, 371, 539, 600
ApeKI GCWGC 2 cut(s) 44, 459
ApoI RAATTY 2 cut(s) 132, 721
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 280, 581
BalI TGGCCA 2 cut(s) 81, 541
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 979
BbsI GAAGAC 2 cut(s) 297, 962
Bbv12I GWGCWC 2 cut(s) 58, 259
BbvI GCAGC 2 cut(s) 56, 471
BceAI ACGGC 2 cut(s) 17, 138
BcoDI GTCTC 2 cut(s) 396, 637
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 988
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 4 cut(s) 45, 151, 460, 600
BlsI GCNGC 4 cut(s) 46, 152, 461, 601
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 313, 374
BmsI GCATC 1 cut(s) 693
BpiI GAAGAC 2 cut(s) 297, 962
BsaAI YACGTR 1 cut(s) 914
BsaI GGTCTC 1 cut(s) 637
BsaWI WCCGGW 2 cut(s) 676, 959
BsaXI ACNNNNNCTCC 4 cut(s) 246, 276, 617, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 425, 836
Bse3DI GCAATG 1 cut(s) 391
BseAI TCCGGA 1 cut(s) 676
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 425, 836
BseX3I CGGCCG 2 cut(s) 151, 600
BseXI GCAGC 2 cut(s) 56, 471
BsgI GTGCAG 1 cut(s) 284
Bsh1285I CGRYCG 2 cut(s) 154, 603
BshFI GGCC 5 cut(s) 81, 153, 373, 541, 602
BshNI GGYRCC 1 cut(s) 311
BsiEI CGRYCG 2 cut(s) 154, 603
BsiHKAI GWGCWC 2 cut(s) 58, 259
BsiSI CCGG 2 cut(s) 677, 960
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 2 cut(s) 396, 637
BsmI GAATGC 3 cut(s) 128, 686, 881
BsnI GGCC 5 cut(s) 81, 153, 373, 541, 602
Bso31I GGTCTC 1 cut(s) 637
Bsp1286I GDGCHC 3 cut(s) 58, 259, 979
Bsp13I TCCGGA 1 cut(s) 676
Bsp1407I TGTACA 5 cut(s) 359, 527, 713, 899, 908
BspACI CCGC 5 cut(s) 150, 213, 399, 599, 948
BspANI GGCC 5 cut(s) 81, 153, 373, 541, 602
BspCNI CTCAG 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 313, 374
BspMI ACCTGC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 391
BsrGI TGTACA 5 cut(s) 359, 527, 713, 899, 908
BsrI ACTGG 2 cut(s) 425, 836
Bst4CI ACNGT 1 cut(s) 147
BstAPI GCANNNNNTGC 3 cut(s) 53, 197, 390
BstAUI TGTACA 5 cut(s) 359, 527, 713, 899, 908
BstBAI YACGTR 1 cut(s) 914
BstC8I GCNNGC 6 cut(s) 30, 64, 83, 169, 198, 512
BstDEI CTNAG 2 cut(s) 67, 378
BstHHI GCGC 1 cut(s) 524
BstMAI GTCTC 2 cut(s) 396, 637
BstMCI CGRYCG 2 cut(s) 154, 603
BstMWI GCNNNNNNNGC 4 cut(s) 53, 197, 390, 596
BstNSI RCATGY 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 56, 471
BstV2I GAAGAC 2 cut(s) 297, 962
BstZI CGGCCG 2 cut(s) 151, 600
BsuRI GGCC 5 cut(s) 81, 153, 373, 541, 602
BtsIMutI CAGTG 1 cut(s) 855
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 6 cut(s) 30, 64, 83, 169, 198, 512
CfoI GCGC 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 372
CseI GACGC 1 cut(s) 173
Csp6I GTAC 5 cut(s) 360, 528, 714, 900, 909
CspCI CAANNNNNGTGG 2 cut(s) 831, 866
CviAII CATG 2 cut(s) 59, 515
CviQI GTAC 5 cut(s) 360, 528, 714, 900, 909
DdeI CTNAG 2 cut(s) 67, 378
EaeI YGGCCR 4 cut(s) 79, 151, 539, 600
EagI CGGCCG 2 cut(s) 151, 600
EclXI CGGCCG 2 cut(s) 151, 600
Eco24I GRGCYC 1 cut(s) 979
Eco31I GGTCTC 1 cut(s) 637
Eco52I CGGCCG 2 cut(s) 151, 600
Eco57I CTGAAG 2 cut(s) 291, 987
EcoT22I ATGCAT 2 cut(s) 686, 881
EcoT38I GRGCYC 1 cut(s) 979
FaeI CATG 2 cut(s) 62, 518
FatI CATG 2 cut(s) 58, 514
Fnu4HI GCNGC 4 cut(s) 45, 151, 460, 600
FriOI GRGCYC 1 cut(s) 979
Fsp4HI GCNGC 4 cut(s) 45, 151, 460, 600
FspBI CTAG 2 cut(s) 51, 988
GlaI GCGC 1 cut(s) 523
GluI GCNGC 4 cut(s) 45, 151, 460, 600
HaeIII GGCC 5 cut(s) 81, 153, 373, 541, 602
HapII CCGG 2 cut(s) 677, 960
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 524
Hin1II CATG 2 cut(s) 62, 518
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HinfI GANTC 4 cut(s) 302, 413, 767, 773
HpaII CCGG 2 cut(s) 677, 960
HphI GGTGA 2 cut(s) 280, 581
Hpy166II GTNNAC 5 cut(s) 362, 530, 823, 900, 911
Hpy188I TCNGA 5 cut(s) 121, 289, 475, 493, 772
Hpy188III TCNNGA 3 cut(s) 677, 815, 872
Hpy8I GTNNAC 5 cut(s) 362, 530, 823, 900, 911
Hpy99I CGWCG 1 cut(s) 413
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 3 cut(s) 465, 557, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 197, 390, 596
HpyF3I CTNAG 2 cut(s) 67, 378
HpySE526I ACGT 3 cut(s) 465, 557, 913
Hsp92II CATG 2 cut(s) 62, 518
HspAI GCGC 1 cut(s) 522
Kpn2I TCCGGA 1 cut(s) 676
LmnI GCTCC 3 cut(s) 90, 254, 962
Lsp1109I GCAGC 2 cut(s) 56, 471
LweI GCATC 1 cut(s) 693
MaeI CTAG 2 cut(s) 51, 988
MaeII ACGT 3 cut(s) 465, 557, 913
MaeIII GTNAC 3 cut(s) 34, 161, 569
MboII GAAGA 3 cut(s) 297, 617, 967
MfeI CAATTG 2 cut(s) 642, 924
MhlI GDGCHC 3 cut(s) 58, 259, 979
MlsI TGGCCA 2 cut(s) 81, 541
MluNI TGGCCA 2 cut(s) 81, 541
MlyI GAGTC 3 cut(s) 311, 422, 767
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 4 cut(s) 103, 653, 848, 989
Mox20I TGGCCA 2 cut(s) 81, 541
Mph1103I ATGCAT 2 cut(s) 686, 881
MroI TCCGGA 1 cut(s) 676
MscI TGGCCA 2 cut(s) 81, 541
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 367
Msp20I TGGCCA 2 cut(s) 81, 541
MspI CCGG 2 cut(s) 677, 960
MunI CAATTG 2 cut(s) 642, 924
Mva1269I GAATGC 3 cut(s) 128, 686, 881
MwoI GCNNNNNNNGC 4 cut(s) 53, 197, 390, 596
NlaIII CATG 2 cut(s) 62, 518
NlaIV GGNNCC 2 cut(s) 313, 374
NmuCI GTSAC 3 cut(s) 34, 161, 569
NsiI ATGCAT 2 cut(s) 686, 881
NspI RCATGY 1 cut(s) 518
OliI CACNNNNGTG 1 cut(s) 367
PaqCI CACCTGC 1 cut(s) 256
PctI GAATGC 3 cut(s) 128, 686, 881
PfeI GAWTC 1 cut(s) 767
PflFI GACNNNGTC 1 cut(s) 629
PkrI GCNGC 4 cut(s) 46, 152, 461, 601
PleI GAGTC 3 cut(s) 310, 421, 767
PpsI GAGTC 3 cut(s) 310, 421, 767
Ppu21I YACGTR 1 cut(s) 914
PspN4I GGNNCC 2 cut(s) 313, 374
PspPI GGNCC 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 629
RsaI GTAC 5 cut(s) 361, 529, 715, 901, 910
RsaNI GTAC 5 cut(s) 360, 528, 714, 900, 909
RseI CAYNNNNRTG 1 cut(s) 367
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 4 cut(s) 45, 151, 460, 600
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 3 cut(s) 311, 422, 767
SduI GDGCHC 3 cut(s) 58, 259, 979
SfaNI GCATC 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 50
SsiI CCGC 5 cut(s) 150, 213, 399, 599, 948
SspMI CTAG 2 cut(s) 51, 988
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 3 cut(s) 468, 560, 916
TaqI TCGA 2 cut(s) 687, 792
TatI WGTACW 5 cut(s) 359, 527, 713, 899, 908
TauI GCSGC 2 cut(s) 153, 602
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 3 cut(s) 34, 161, 569
TseI GCWGC 2 cut(s) 44, 459
Tsp45I GTSAC 3 cut(s) 34, 161, 569
TspDTI ATGAA 1 cut(s) 497
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 855
Tth111I GACNNNGTC 1 cut(s) 629
XapI RAATTY 2 cut(s) 132, 721
XceI RCATGY 1 cut(s) 518
XspI CTAG 2 cut(s) 51, 988
Zsp2I ATGCAT 2 cut(s) 686, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.