Rh3CG093100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000954
Physical Location & Seq
Forward (+)
7284992 .. 7286090
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG093100.1

Sequence Viewer

Length: 453 bp
ATGAGTTTCAGAAATATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTGGACCTATTTGGCCAGCTGCTTACCTCCAAGAACCAAATAGACCCTAATCTTGAATGCCAAAAAATTCCATATCTATTGTGCGACCGTGTCTGTGACGCTTGCGTTTGCGATAGGCGAGCTCCAGAATTTGCAGAGTGCATTTGCGGAAAGTGGAAACCAACAGCAGAACTCCAGAAATCTGATGAAGCACAAGTGCAGGTGATAGGAAAAGAAAAATCTTATATTAAAGTTGAGCCTTCAGGCCTCATTCCAGAAGAAGAATGCATCAAAATCTGCAGAGTATGTGCTTGTACACTACAGCCGCCCCCTTTGACGAGTTGGTGCATTGATTGCCGCGGCATTCCATATAAGAAGACTGAGGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.77

Weight (kDa)

7.39

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AccII CGCG 1 cut(s) 420
AciI CCGC 4 cut(s) 228, 386, 418, 420
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 147, 209
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 22, 137
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 3 cut(s) 100, 203, 450
AluI AGCT 3 cut(s) 100, 203, 450
Alw21I GWGCWC 2 cut(s) 73, 205
AoxI GGCC 2 cut(s) 94, 325
ApeKI GCWGC 2 cut(s) 59, 100
ApoI RAATTY 2 cut(s) 147, 209
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 446
AvaII GGWCC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 96
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 2 cut(s) 73, 205
BbvI GCAGC 2 cut(s) 71, 87
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 447
BfmI CTRYAG 2 cut(s) 358, 380
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 5 cut(s) 60, 101, 386, 418, 421
BlsI GCNGC 5 cut(s) 61, 102, 387, 419, 422
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 357
BmtI GCTAGC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 2 cut(s) 189, 239
BsaJI CCNNGG 2 cut(s) 48, 418
BseDI CCNNGG 2 cut(s) 48, 418
BseMII CTCAG 1 cut(s) 432
BseXI GCAGC 2 cut(s) 71, 87
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 96, 327
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 73, 205
BsmI GAATGC 3 cut(s) 143, 350, 423
BsnI GGCC 2 cut(s) 96, 327
Bsp1286I GDGCHC 2 cut(s) 73, 205
Bsp1407I TGTACA 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 4 cut(s) 228, 386, 418, 420
BspANI GGCC 2 cut(s) 96, 327
BspCNI CTCAG 1 cut(s) 433
BspFNI CGCG 1 cut(s) 420
BspMAI CTGCAG 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 450
BsrGI TGTACA 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 48, 418
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 170
BstAPI GCANNNNNTGC 2 cut(s) 68, 414
BstAUI TGTACA 1 cut(s) 374
BstC8I GCNNGC 6 cut(s) 45, 79, 98, 184, 201, 448
BstDEI CTNAG 1 cut(s) 441
BstDSI CCRYGG 2 cut(s) 48, 418
BstFNI CGCG 1 cut(s) 420
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 414
BstSFI CTRYAG 2 cut(s) 358, 380
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 71, 87
BstV2I GAAGAC 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 96, 327
BtgI CCRYGG 2 cut(s) 48, 418
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 6 cut(s) 45, 79, 98, 184, 201, 448
Cfr13I GGNCC 1 cut(s) 85
Cfr42I CCGCGG 1 cut(s) 421
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 49, 74
CviJI RGCY 9 cut(s) 53, 96, 100, 203, 319, 327, 385, 446, 450
CviKI_1 RGCY 9 cut(s) 53, 96, 100, 203, 319, 327, 385, 446, 450
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 52, 77
FaiI YATR 8 cut(s) 17, 50, 75, 154, 306, 367, 430, 432
FatI CATG 2 cut(s) 48, 73
Fnu4HI GCNGC 5 cut(s) 60, 101, 386, 418, 421
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 5 cut(s) 60, 101, 386, 418, 421
FspBI CTAG 2 cut(s) 66, 447
GluI GCNGC 5 cut(s) 60, 101, 386, 418, 421
GsuI CTGGAG 2 cut(s) 189, 239
HaeIII GGCC 2 cut(s) 96, 327
HgaI GACGC 1 cut(s) 188
Hin1II CATG 2 cut(s) 52, 77
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 11, 265
Hpy188III TCNNGA 4 cut(s) 134, 206, 256, 335
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 6 cut(s) 215, 222, 280, 348, 360, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 414
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 2 cut(s) 52, 77
KspI CCGCGG 1 cut(s) 421
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 110, 219, 266, 269, 309, 348
Lsp1109I GCAGC 2 cut(s) 71, 87
LweI GCATC 1 cut(s) 357
MaeI CTAG 2 cut(s) 66, 447
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 3 cut(s) 350, 353, 448
MhlI GDGCHC 2 cut(s) 73, 205
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 2 cut(s) 147, 209
MluNI TGGCCA 1 cut(s) 96
MnlI CCTC 3 cut(s) 118, 338, 436
Mox20I TGGCCA 1 cut(s) 96
Mph1103I ATGCAT 1 cut(s) 350
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 35, 309
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 2 cut(s) 100, 420
Mva1269I GAATGC 3 cut(s) 143, 350, 423
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 414
NcoI CCATGG 1 cut(s) 48
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 2 cut(s) 52, 77
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 327
PctI GAATGC 3 cut(s) 143, 350, 423
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 5 cut(s) 61, 102, 387, 419, 422
Psp124BI GAGCTC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacI GAGCTC 1 cut(s) 205
SacII CCGCGG 1 cut(s) 421
SaqAI TTAA 2 cut(s) 35, 309
SatI GCNGC 5 cut(s) 60, 101, 386, 418, 421
Sau96I GGNCC 1 cut(s) 85
SduI GDGCHC 2 cut(s) 73, 205
SetI ASST 6 cut(s) 90, 102, 110, 205, 285, 452
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 2 cut(s) 358, 380
Sfr303I CCGCGG 1 cut(s) 421
SgrBI CCGCGG 1 cut(s) 421
SinI GGWCC 1 cut(s) 85
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 2 cut(s) 147, 209
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 4 cut(s) 228, 386, 418, 420
SspMI CTAG 2 cut(s) 66, 447
SstI GAGCTC 1 cut(s) 205
StuI AGGCCT 1 cut(s) 327
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 170
TasI AATT 2 cut(s) 147, 209
TatI WGTACW 1 cut(s) 374
TauI GCSGC 3 cut(s) 388, 420, 423
Tru1I TTAA 2 cut(s) 35, 309
Tru9I TTAA 2 cut(s) 35, 309
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 59, 100
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 147, 209
XspI CTAG 2 cut(s) 66, 447
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.