Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004868.1

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Reverse (-)

28185 .. 30086

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004868.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgttgcttgccgtgacattggcagcaaccagtgctcatgctcgcttagacctatttggccagctccttacctccaagaaccagccagaccctaattcggaatgccagaaaattccatatctactgtgcggccgtgtctgtgacgcttgcgtttgcgataggcgtgtggcagagcttgcagagtgcttttgcggaaagtggaaaccatttgcagaactccaaaaatatgacggagcacaagtgcaggtgatagaaaaagaaaaatcagatattgaagttgagtcttcaggcaccattccttatacagagtgcataaaaacttgcgataaatgtttttgtacacgaatgtggccccctgagagcaatgtgtgcatttgcggagacaacgacgagtccaagaagccagttgctttagtccaagaagcgaaaatgagtagcagcaacgtgaaatcagagataatgaattattcagactgccagaaaaactgcaagcatgtatgcgcttgtacactaatttggccacctgaactatcaacgtgcgtttgtggtgactacatcaaatcatcagccaataaagcggccgaagaattgcataaagaattggacttggtctccaagccaattgcaaaatcagtaggaggctttattccatatccggaatgcatcgaaaaatgtgatgagtgtgtaatttgtacaaaaaatttgccaatggagaaagtattgtgctattgtggtaaaaagactgattccgactccaagaagccaacaatcgaatatgcagaaaaattacttccagaattggacgtagccaaaccagttgcaaaatcagtgggaggctttattccatatctagaatgcatagagaaatgtgatgactgcacagtatgtacacttatttatccaattgagaaagcattgtgctattgcggtaagacgaccggagctgaagccagagccctccccgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.48

Weight (kDa)

5.29

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	655
AciI	CCGC	5 cut(s)	129, 192, 378, 578, 927
AcoI	YGGCCR	4 cut(s)	58, 130, 518, 579
AcsI	RAATTY	2 cut(s)	111, 700
AcuI	CTGAAG	2 cut(s)	270, 966
AfaI	GTAC	4 cut(s)	340, 508, 694, 889
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	275
AleI	CACNNNNGTG	1 cut(s)	346
AluBI	AGCT	3 cut(s)	64, 175, 944
AluI	AGCT	3 cut(s)	64, 175, 944
Alw21I	GWGCWC	2 cut(s)	37, 238
Alw26I	GTCTC	2 cut(s)	375, 616
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	5 cut(s)	58, 130, 350, 518, 579
ApeKI	GCWGC	2 cut(s)	23, 438
ApoI	RAATTY	2 cut(s)	111, 700
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	259, 560
BalI	TGGCCA	2 cut(s)	60, 520
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	37, 238
BbvI	GCAGC	2 cut(s)	35, 450
BceAI	ACGGC	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	375, 616
BfaI	CTAG	2 cut(s)	851, 967
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	24, 130, 439, 579
BlsI	GCNGC	4 cut(s)	25, 131, 440, 580
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	292, 353
BmsI	GCATC	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	616
BsaWI	WCCGGW	2 cut(s)	655, 938
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 596, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	30, 404, 815
Bse3DI	GCAATG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	655
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	30, 404, 815
BseX3I	CGGCCG	2 cut(s)	130, 579
BseXI	GCAGC	2 cut(s)	35, 450
BsgI	GTGCAG	2 cut(s)	263, 862
Bsh1285I	CGRYCG	3 cut(s)	133, 582, 939
BshFI	GGCC	5 cut(s)	60, 132, 352, 520, 581
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	3 cut(s)	133, 582, 939
BsiHKAI	GWGCWC	2 cut(s)	37, 238
BsiSI	CCGG	2 cut(s)	656, 939
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	375, 616
BsmI	GAATGC	3 cut(s)	107, 665, 860
BsnI	GGCC	5 cut(s)	60, 132, 352, 520, 581
Bso31I	GGTCTC	1 cut(s)	616
Bsp1286I	GDGCHC	3 cut(s)	37, 238, 958
Bsp13I	TCCGGA	1 cut(s)	655
Bsp1407I	TGTACA	4 cut(s)	338, 506, 692, 887
BspACI	CCGC	5 cut(s)	129, 192, 378, 578, 927
BspANI	GGCC	5 cut(s)	60, 132, 352, 520, 581
BspCNI	CTCAG	1 cut(s)	349
BspEI	TCCGGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	292, 353
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	4 cut(s)	338, 506, 692, 887
BsrI	ACTGG	3 cut(s)	30, 404, 815
Bst4CI	ACNGT	2 cut(s)	126, 883
BstAPI	GCANNNNNTGC	3 cut(s)	32, 176, 369
BstAUI	TGTACA	4 cut(s)	338, 506, 692, 887
BstC8I	GCNNGC	6 cut(s)	9, 43, 62, 148, 177, 491
BstDEI	CTNAG	2 cut(s)	46, 357
BstHHI	GCGC	1 cut(s)	503
BstMAI	GTCTC	2 cut(s)	375, 616
BstMCI	CGRYCG	3 cut(s)	133, 582, 939
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 176, 369, 575
BstNSI	RCATGY	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	35, 450
BstV2I	GAAGAC	1 cut(s)	276
BstZI	CGGCCG	2 cut(s)	130, 579
BsuRI	GGCC	5 cut(s)	60, 132, 352, 520, 581
BtsIMutI	CAGTG	2 cut(s)	37, 834
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	6 cut(s)	9, 43, 62, 148, 177, 491
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	351
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	339, 507, 693, 888
CspCI	CAANNNNNGTGG	2 cut(s)	810, 845
CviAII	CATG	2 cut(s)	38, 494
CviQI	GTAC	4 cut(s)	339, 507, 693, 888
DdeI	CTNAG	2 cut(s)	46, 357
EaeI	YGGCCR	4 cut(s)	58, 130, 518, 579
EagI	CGGCCG	2 cut(s)	130, 579
EclXI	CGGCCG	2 cut(s)	130, 579
Eco24I	GRGCYC	1 cut(s)	958
Eco31I	GGTCTC	1 cut(s)	616
Eco52I	CGGCCG	2 cut(s)	130, 579
Eco57I	CTGAAG	2 cut(s)	270, 966
EcoT22I	ATGCAT	2 cut(s)	665, 860
EcoT38I	GRGCYC	1 cut(s)	958
FaeI	CATG	2 cut(s)	41, 497
FatI	CATG	2 cut(s)	37, 493
Fnu4HI	GCNGC	4 cut(s)	24, 130, 439, 579
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	4 cut(s)	24, 130, 439, 579
FspBI	CTAG	2 cut(s)	851, 967
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	4 cut(s)	24, 130, 439, 579
HaeIII	GGCC	5 cut(s)	60, 132, 352, 520, 581
HapII	CCGG	2 cut(s)	656, 939
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	2 cut(s)	41, 497
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	4 cut(s)	281, 392, 746, 752
HpaII	CCGG	2 cut(s)	656, 939
HphI	GGTGA	2 cut(s)	259, 560
Hpy166II	GTNNAC	3 cut(s)	341, 509, 890
Hpy188I	TCNGA	5 cut(s)	100, 268, 454, 472, 751
Hpy188III	TCNNGA	3 cut(s)	656, 794, 851
Hpy8I	GTNNAC	3 cut(s)	341, 509, 890
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	126, 883
HpyCH4IV	ACGT	3 cut(s)	444, 536, 804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 176, 369, 575
HpyF3I	CTNAG	2 cut(s)	46, 357
HpySE526I	ACGT	3 cut(s)	444, 536, 804
Hsp92II	CATG	2 cut(s)	41, 497
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	655
LmnI	GCTCC	3 cut(s)	69, 233, 941
Lsp1109I	GCAGC	2 cut(s)	35, 450
LweI	GCATC	1 cut(s)	672
MaeI	CTAG	2 cut(s)	851, 967
MaeII	ACGT	3 cut(s)	444, 536, 804
MaeIII	GTNAC	3 cut(s)	13, 140, 548
MboII	GAAGA	2 cut(s)	276, 596
MfeI	CAATTG	2 cut(s)	621, 903
MhlI	GDGCHC	3 cut(s)	37, 238, 958
MlsI	TGGCCA	2 cut(s)	60, 520
MluNI	TGGCCA	2 cut(s)	60, 520
MlyI	GAGTC	3 cut(s)	290, 401, 746
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	4 cut(s)	82, 632, 827, 968
Mox20I	TGGCCA	2 cut(s)	60, 520
Mph1103I	ATGCAT	2 cut(s)	665, 860
MroI	TCCGGA	1 cut(s)	655
MscI	TGGCCA	2 cut(s)	60, 520
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	2 cut(s)	60, 520
MspI	CCGG	2 cut(s)	656, 939
MunI	CAATTG	2 cut(s)	621, 903
Mva1269I	GAATGC	3 cut(s)	107, 665, 860
MwoI	GCNNNNNNNGC	4 cut(s)	32, 176, 369, 575
NlaIII	CATG	2 cut(s)	41, 497
NlaIV	GGNNCC	2 cut(s)	292, 353
NmuCI	GTSAC	3 cut(s)	13, 140, 548
NsiI	ATGCAT	2 cut(s)	665, 860
NspI	RCATGY	1 cut(s)	497
OliI	CACNNNNGTG	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	235
PctI	GAATGC	3 cut(s)	107, 665, 860
PfeI	GAWTC	1 cut(s)	746
PflFI	GACNNNGTC	1 cut(s)	608
PkrI	GCNGC	4 cut(s)	25, 131, 440, 580
PleI	GAGTC	3 cut(s)	289, 400, 746
PpsI	GAGTC	3 cut(s)	289, 400, 746
PspN4I	GGNNCC	2 cut(s)	292, 353
PspPI	GGNCC	1 cut(s)	351
PsyI	GACNNNGTC	1 cut(s)	608
RsaI	GTAC	4 cut(s)	340, 508, 694, 889
RsaNI	GTAC	4 cut(s)	339, 507, 693, 888
RseI	CAYNNNNRTG	1 cut(s)	346
SatI	GCNGC	4 cut(s)	24, 130, 439, 579
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	3 cut(s)	290, 401, 746
SduI	GDGCHC	3 cut(s)	37, 238, 958
SfaNI	GCATC	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	346
SsiI	CCGC	5 cut(s)	129, 192, 378, 578, 927
SspMI	CTAG	2 cut(s)	851, 967
TaaI	ACNGT	2 cut(s)	126, 883
TaiI	ACGT	3 cut(s)	447, 539, 807
TaqI	TCGA	2 cut(s)	666, 771
TatI	WGTACW	4 cut(s)	338, 506, 692, 887
TauI	GCSGC	2 cut(s)	132, 581
TfiI	GAWTC	1 cut(s)	746
TscAI	CASTG	2 cut(s)	37, 834
TseFI	GTSAC	3 cut(s)	13, 140, 548
TseI	GCWGC	2 cut(s)	23, 438
Tsp45I	GTSAC	3 cut(s)	13, 140, 548
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	37, 834
Tth111I	GACNNNGTC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	111, 700
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	1 cut(s)	497
XspI	CTAG	2 cut(s)	851, 967
Zsp2I	ATGCAT	2 cut(s)	665, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.