Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000954

Physical Location & Seq

Genomic Coordinates Reverse (-)

11202519 .. 11203765

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGTTCCAGAAATATGCAGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTTCTCATGCTCGCTTGGATCAATTTAGTCAGTTGCTTGCCTCCGAGAACCAACCTGCAGACCCTAATTATAGAGGAGGGAAAATTCCTTATACGGTTTGCAGACGTATGTGTGACAACTGCGTTTGCGATAGGCGTGCGCCTGAGTATGCAATGTGCGTTTGCATGGACCGGAAACCAGCTGCACCTCTCCACGAATCTGAAGAAGTAGTGCAGGTGGAGCTGAATGGAAAATCAGATGCCGAGGAGTCCCGGATGCGTATGCCATATCTTGAATGCATGAGTAAATGTGATGACTGTGTAGCTTGCACACGTATGTACCCTCGTGAAAGAAACACTTGCATTTGCGTTACAAACAGCAGGTCCGAGAAGCCAGCTGCTATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.05

Weight (kDa)

7.44

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08700 FvH4_6g08700 FvH4_6g08700 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08720 FvH4_6g08721 FvH4_6g17260
rosa_chinensis	RchiOBHm_Chr2g0133741 RchiOBHm_Chr3g0458851 RchiOBHm_Chr3g0458891 RchiOBHm_Chr3g0458901 RchiOBHm_Chr3g0458941 RchiOBHm_Chr3g0458971
rosa_laevigata	RLG00000019362
rosa_multiflora	Rmu_sc0001634.1_g000043 Rmu_sc0001634.1_g000045 Rmu_sc0001634.1_g000049 Rmu_sc0001782.1_g000056 Rmu_sc0004868.1_g000001 Rmu_sc0004868.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110850 Rroxscaffold_4G00322850 Rroxscaffold_6G00420640 Rroxscaffold_6G00420660 Rroxscaffold_6G00420670 Rroxscaffold_6G00420690 Rroxscaffold_6G00420700 Rroxscaffold_6G00420720 Rroxscaffold_7G00158640
rosa_rugosa	Rorug02G0313400 Rorug02G0313500 Rorug02G0313500 Rorug03G0032300 Rorug03G0032400 Rorug03G0117300
rosa_samantha	Rh2AG366700 Rh2BG372500 Rh2CG350100 Rh2DG389500 Rh3AG089800 Rh3AG090000 Rh3AG090100 Rh3AG090200 Rh3AG090300 Rh3BG092900 Rh3BG093100 Rh3BG093200 Rh3BG093300 Rh3CG093100 Rh3CG093400 Rh3CG093500 Rh3CG093600 Rh3DG093800 Rh3DG093900 Rh3DG094000
rosa_wichuraiana	Rw2G029850 Rw3G007700 Rw3G007710 Rw3G007720 Rw3G007730 Rw3G007740 Rw3G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
Acc36I	ACCTGC	3 cut(s)	130, 271, 417
AclWI	GGATC	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	65
AluBI	AGCT	4 cut(s)	248, 289, 371, 443
AluI	AGCT	4 cut(s)	248, 289, 371, 443
AlwI	GGATC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	59, 248, 443
ApoI	RAATTY	1 cut(s)	150
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	235, 429
AsuC2I	CCSGG	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	235, 429
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BauI	CACGAG	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	71, 235, 430
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BcnI	CCSGG	1 cut(s)	319
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	3 cut(s)	130, 271, 417
BisI	GCNGC	3 cut(s)	60, 249, 444
BlsI	GCNGC	3 cut(s)	61, 250, 445
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	2 cut(s)	235, 429
BmgT120I	GGNCC	2 cut(s)	235, 429
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	295, 312
BpuMI	CCSGG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	48, 309
BsaWI	WCCGGW	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	48, 309
BseGI	GGATG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	2 cut(s)	156, 326
BseXI	GCAGC	3 cut(s)	71, 235, 430
BsgI	GTGCAG	2 cut(s)	234, 299
BsiSI	CCGG	2 cut(s)	238, 319
BslFI	GGGAC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	202
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	3 cut(s)	130, 271, 417
BspPI	GGATC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	48, 309
BssMI	GATC	1 cut(s)	85
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	48
Bst2BI	CACGAG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	163, 365
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	6 cut(s)	45, 79, 105, 204, 373, 441
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 286
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	71, 235, 430
BstXI	CCANNNNNNTGG	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	3 cut(s)	130, 271, 417
Cac8I	GCNNGC	6 cut(s)	45, 79, 105, 204, 373, 441
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	235, 429
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	4 cut(s)	49, 74, 232, 346
CviJI	RGCY	6 cut(s)	53, 248, 289, 371, 439, 443
CviKI_1	RGCY	6 cut(s)	53, 248, 289, 371, 439, 443
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	235, 429
Eco57I	CTGAAG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	52, 77, 235, 349
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	48, 73, 231, 345
Fnu4HI	GCNGC	3 cut(s)	60, 249, 444
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	60, 249, 444
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	3 cut(s)	60, 249, 444
HapII	CCGG	2 cut(s)	238, 319
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	52, 77, 235, 349
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	263, 314
HpaII	CCGG	2 cut(s)	238, 319
Hpy188I	TCNGA	4 cut(s)	112, 268, 304, 433
Hpy188III	TCNNGA	3 cut(s)	9, 338, 392
HpyCH4III	ACNGT	2 cut(s)	163, 365
HpyCH4IV	ACGT	2 cut(s)	172, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 286
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	172, 379
Hsp92II	CATG	4 cut(s)	52, 77, 235, 349
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	8 cut(s)	22, 135, 222, 251, 258, 266, 332, 412
Lsp1109I	GCAGC	3 cut(s)	71, 235, 430
LweI	GCATC	2 cut(s)	295, 312
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	172, 379
MaeIII	GTNAC	2 cut(s)	179, 415
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	1 cut(s)	281
MluCI	AATT	3 cut(s)	89, 133, 150
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	118, 134, 137, 264, 304, 399
Mph1103I	ATGCAT	1 cut(s)	347
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	2 cut(s)	248, 443
MspI	CCGG	2 cut(s)	238, 319
MspR9I	CCNGG	1 cut(s)	319
Mva1269I	GAATGC	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	59, 286
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	52, 77, 235, 349
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	347
PaqCI	CACCTGC	1 cut(s)	271
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	61, 250, 445
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	380
PspPI	GGNCC	2 cut(s)	235, 429
PstI	CTGCAG	1 cut(s)	127
PvuII	CAGCTG	2 cut(s)	248, 443
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	3 cut(s)	60, 249, 444
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	2 cut(s)	235, 429
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	319
SfaNI	GCATC	2 cut(s)	295, 312
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	235, 429
SmiMI	CAYNNNNRTG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	3 cut(s)	89, 133, 150
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	163, 365
TaiI	ACGT	2 cut(s)	175, 382
TasI	AATT	3 cut(s)	89, 133, 150
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	59, 248, 443
Tsp45I	GTSAC	1 cut(s)	179
VpaK11BI	GGWCC	2 cut(s)	235, 429
XapI	RAATTY	1 cut(s)	150
XspI	CTAG	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.