Rw3G007710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000954
Physical Location & Seq
Forward (+)
7140428 .. 7141718
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007710.1

Sequence Viewer

Length: 441 bp
ATGTTGAGAGTAGGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGATCTATTTGGCCAGCTGCTCACCTCCAAGAACCAACCAAATCCCAATTCAGAATGCCAGAAAATTCCATTTCTACTATGCGACCGTGTCTGTGACGTTTGCGTTTGCGATAGACGTGCTCCAGAGTTTGCAGAGTGCTTTTGCGGACAGTGGAAACCTTATGCAGAACTCCAAAAATCTGACGAAGCACAAGTGCAGGTGATAGGATTAGAAAAATCTTCTATTAAAGCTAAGTCTTCGGGCGCTATTCCATATACAGAATGCATCAAAGTCTGCAAAATTTGTGCTTGTACACAAATGTGGCCCCCTGAGGCAAATTGGTGCATTGATTGCCGCGGGACTGAAGCTGAAGGCAGAGCCCTCCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.15

Weight (kDa)

6.55

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
AccII CGCG 1 cut(s) 405
AciI CCGC 3 cut(s) 213, 403, 405
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 2 cut(s) 132, 348
AcuI CTGAAG 2 cut(s) 432, 438
AfaI GTAC 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 50
AjiI CACGTC 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AleI CACNNNNGTG 1 cut(s) 367
AluBI AGCT 3 cut(s) 85, 299, 416
AluI AGCT 3 cut(s) 85, 299, 416
Alw21I GWGCWC 2 cut(s) 58, 190
AoxI GGCC 2 cut(s) 79, 371
ApeKI GCWGC 2 cut(s) 44, 85
ApoI RAATTY 2 cut(s) 132, 348
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 82, 280
AxyI CCTNAGG 1 cut(s) 378
BalI TGGCCA 1 cut(s) 81
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 58, 190
BbvI GCAGC 2 cut(s) 56, 72
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 439
BfoI RGCGCY 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 256
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 45, 86, 403
BlsI GCNGC 3 cut(s) 46, 87, 404
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 374
BmsI GCATC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 33, 403
Bse21I CCTNAGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 33, 403
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 56, 72
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 81, 373
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 58, 190
BslFI GGGAC 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 2 cut(s) 128, 335
BsnI GGCC 2 cut(s) 81, 373
Bsp1286I GDGCHC 3 cut(s) 58, 190, 430
Bsp1407I TGTACA 1 cut(s) 359
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 213, 403, 405
BspANI GGCC 2 cut(s) 81, 373
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 33, 403
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 155, 219
BstAPI GCANNNNNTGC 2 cut(s) 53, 399
BstAUI TGTACA 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 30, 64, 83
BstDEI CTNAG 3 cut(s) 67, 300, 378
BstDSI CCRYGG 2 cut(s) 33, 403
BstFNI CGCG 1 cut(s) 405
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 399
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 56, 72
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 81, 373
BtgI CCRYGG 2 cut(s) 33, 403
BtrI CACGTC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 224
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 30, 64, 83
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 372
Cfr42I CCGCGG 1 cut(s) 406
Csp6I GTAC 1 cut(s) 360
CviAII CATG 2 cut(s) 34, 59
CviJI RGCY 7 cut(s) 38, 81, 85, 299, 373, 416, 428
CviKI_1 RGCY 7 cut(s) 38, 81, 85, 299, 373, 416, 428
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 3 cut(s) 67, 300, 378
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 432, 438
Eco81I CCTNAGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 62
FaiI YATR 6 cut(s) 35, 60, 148, 231, 322, 324
FaqI GGGAC 1 cut(s) 421
FatI CATG 2 cut(s) 33, 58
FauI CCCGC 1 cut(s) 398
Fnu4HI GCNGC 3 cut(s) 45, 86, 403
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 45, 86, 403
FspBI CTAG 2 cut(s) 51, 439
GlaI GCGC 1 cut(s) 313
GluI GCNGC 3 cut(s) 45, 86, 403
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 2 cut(s) 81, 373
HhaI GCGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 37, 62
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HphI GGTGA 2 cut(s) 82, 280
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 121, 250
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 413
HpyCH4III ACNGT 2 cut(s) 155, 219
HpyCH4IV ACGT 2 cut(s) 165, 184
HpyCH4V TGCA 6 cut(s) 200, 233, 265, 333, 345, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 399
HpyF3I CTNAG 3 cut(s) 67, 300, 378
HpySE526I ACGT 2 cut(s) 165, 184
Hsp92II CATG 2 cut(s) 37, 62
HspAI GCGC 1 cut(s) 312
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 95, 140, 204, 251, 390
Lsp1109I GCAGC 2 cut(s) 56, 72
LweI GCATC 1 cut(s) 342
MaeI CTAG 2 cut(s) 51, 439
MaeII ACGT 2 cut(s) 165, 184
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 279, 297
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 58, 190, 430
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 4 cut(s) 115, 132, 348, 385
MluNI TGGCCA 1 cut(s) 81
MnlI CCTC 3 cut(s) 103, 373, 440
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 335
MscI TGGCCA 1 cut(s) 81
MseI TTAA 2 cut(s) 20, 294
MslI CAYNNNNRTG 1 cut(s) 367
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 85, 405
Mva1269I GAATGC 2 cut(s) 128, 335
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 399
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 37, 62
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 335
OliI CACNNNNGTG 1 cut(s) 367
PaqCI CACCTGC 1 cut(s) 256
PctI GAATGC 2 cut(s) 128, 335
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 46, 87, 404
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 367
SacII CCGCGG 1 cut(s) 406
SaqAI TTAA 2 cut(s) 20, 294
SatI GCNGC 3 cut(s) 45, 86, 403
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 372
SduI GDGCHC 3 cut(s) 58, 190, 430
SetI ASST 9 cut(s) 16, 87, 95, 168, 187, 229, 270, 301, 418
SfaNI GCATC 1 cut(s) 342
Sfr303I CCGCGG 1 cut(s) 406
SgrBI CCGCGG 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 4 cut(s) 115, 132, 348, 385
SsiI CCGC 3 cut(s) 213, 403, 405
SspMI CTAG 2 cut(s) 51, 439
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 155, 219
TaiI ACGT 2 cut(s) 168, 187
TasI AATT 4 cut(s) 115, 132, 348, 385
TatI WGTACW 1 cut(s) 359
TauI GCSGC 1 cut(s) 405
Tru1I TTAA 2 cut(s) 20, 294
Tru9I TTAA 2 cut(s) 20, 294
TscAI CASTG 1 cut(s) 224
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 44, 85
Tsp45I GTSAC 1 cut(s) 161
TspRI CASTG 1 cut(s) 224
Tth111I GACNNNGTC 1 cut(s) 155
XapI RAATTY 2 cut(s) 132, 348
XspI CTAG 2 cut(s) 51, 439
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.