Rmu_sc0001634.1_g000043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001634.1
OG0000954
Physical Location & Seq
Forward (+)
237148 .. 240083
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001634.1_g000043.1.cds

Sequence Viewer

Length: 1131 bp
atgactttggcagcaactagtgctcatgctcgcttagacctatttggccagctccttacctccaagaaccaaccagaagggaaaggggaagaaccgcctcaagcggcagccctcaaggccggccctgagcggagcccatctctttctcagtgcacttgttcacagtggaaaccatttgcagcactccaaaaatctgacgaagcacatgtgcaggtgatagaaaaagaaaaatctgctattcaagttgagtcttcagggaccattccatatacagagtgcataaaaacttgcgataaatgtttttgtacactaaagtggccccctgagagcaatgtgtgcatttgcggagacaacgacgagtccaagaagccagttgctttagtccaagaagcgaaaatgagtagcagcaacgtgaactcagagataatgccatattcagaatgccagaaaaactgcaagcatgtatgcgcttgtacactaatttggctaccagaactatcaacgtgcgtttgtggtgactacatcaaatcatcagccaatgaagcggccgaagaattgcataaagaattggacttggtctccaagccagttgcaaaatcagtgggaggctttattccatatccggaatgcattgaaaaatgtgacgagtgcgtaatttgtacaaaaaattggccaatggagaaagtactgtgctattgtggtaaaaagactgattccgactccaagaagccaacaatcgaatatgcagaaaaattacttccagaattggacgtagccaaaccagttgcaaaatcagtgggaggctttattccatatccggaatgcatcgaaaaatgtgatgagtgtgtaatttgtacaaaaaattggccaatggagaaagtactgtgctattgtggtaaaaagactgattccgactccaagaagccaacaatcgaatatgcagaaaaattacttccagaattggacgtagccgcccattttaagcagcctagttgtgcttcgtgccgtgcttgggccggccatttattatcgtgtcgggctcgtgccgactcatttattgaaatattaagcctgacccggcccatgacccttcccatatcgtgtcgggcggtgctcgtgccgggtcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

41.3

Weight (kDa)

5.84

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 130
AccIII TCCGGA 2 cut(s) 622, 817
AciI CCGC 7 cut(s) 95, 104, 130, 345, 545, 972, 1109
AcoI YGGCCR 5 cut(s) 46, 546, 671, 866, 1018
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 6 cut(s) 307, 475, 661, 687, 856, 882
AfiI CCNNNNNNNGG 1 cut(s) 1012
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 3 cut(s) 242, 635, 1061
AhlI ACTAGT 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 313
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 3 cut(s) 25, 155, 1116
Alw26I GTCTC 2 cut(s) 342, 583
Alw44I GTGCAC 1 cut(s) 151
Aor13HI TCCGGA 2 cut(s) 622, 817
ApaLI GTGCAC 1 cut(s) 151
ApeKI GCWGC 5 cut(s) 11, 107, 179, 405, 985
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 5 cut(s) 122, 258, 318, 1014, 1080
AsuC2I CCSGG 2 cut(s) 1078, 1122
AsuHPI GGTGA 2 cut(s) 226, 527
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 155
BalI TGGCCA 3 cut(s) 48, 673, 868
BanII GRGCYC 2 cut(s) 137, 1042
BauI CACGAG 2 cut(s) 1041, 1115
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 3 cut(s) 25, 155, 1116
BbvI GCAGC 5 cut(s) 23, 119, 191, 417, 997
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 990
BcnI CCSGG 2 cut(s) 1078, 1122
BcoDI GTCTC 2 cut(s) 342, 583
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 2 cut(s) 18, 990
BfuAI ACCTGC 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 8 cut(s) 12, 105, 108, 180, 406, 546, 972, 986
BlsI GCNGC 8 cut(s) 13, 106, 109, 181, 407, 547, 973, 987
BmcAI AGTACT 2 cut(s) 687, 882
Bme1390I CCNGG 2 cut(s) 1078, 1122
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 5 cut(s) 122, 258, 318, 1014, 1080
BmiI GGNNCC 3 cut(s) 134, 259, 320
BmrFI CCNGG 2 cut(s) 1078, 1122
BmsI GCATC 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 124, 156
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 84, 98
BpuMI CCSGG 2 cut(s) 1078, 1122
BsaI GGTCTC 1 cut(s) 583
BsaWI WCCGGW 2 cut(s) 622, 817
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 1 cut(s) 1012
Bse118I RCCGGY 2 cut(s) 119, 1016
Bse1I ACTGG 3 cut(s) 371, 587, 782
Bse3DI GCAATG 1 cut(s) 337
BseAI TCCGGA 2 cut(s) 622, 817
BseLI CCNNNNNNNGG 1 cut(s) 1012
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 4 cut(s) 117, 161, 315, 432
BseNI ACTGG 3 cut(s) 371, 587, 782
BseSI GKGCMC 1 cut(s) 155
BseX3I CGGCCG 1 cut(s) 546
BseXI GCAGC 5 cut(s) 23, 119, 191, 417, 997
BsgI GTGCAG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 549
BsiEI CGRYCG 1 cut(s) 549
BsiHKAI GWGCWC 3 cut(s) 25, 155, 1116
BsiSI CCGG 6 cut(s) 120, 623, 818, 1017, 1078, 1121
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 1012
BsmAI GTCTC 2 cut(s) 342, 583
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 3 cut(s) 446, 632, 827
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 5 cut(s) 25, 137, 155, 1042, 1116
Bsp13I TCCGGA 2 cut(s) 622, 817
Bsp1407I TGTACA 4 cut(s) 305, 473, 659, 854
BspACI CCGC 7 cut(s) 95, 104, 130, 345, 545, 972, 1109
BspCNI CTCAG 4 cut(s) 118, 160, 316, 431
BspEI TCCGGA 2 cut(s) 622, 817
BspLI GGNNCC 3 cut(s) 134, 259, 320
BspMI ACCTGC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 2 cut(s) 119, 1016
BsrGI TGTACA 4 cut(s) 305, 473, 659, 854
BsrI ACTGG 3 cut(s) 371, 587, 782
BssAI RCCGGY 2 cut(s) 119, 1016
BssSI CACGAG 2 cut(s) 1041, 1115
Bst2BI CACGAG 2 cut(s) 1041, 1115
Bst4CI ACNGT 3 cut(s) 165, 690, 885
BstAPI GCANNNNNTGC 2 cut(s) 20, 336
BstAUI TGTACA 4 cut(s) 305, 473, 659, 854
BstC8I GCNNGC 5 cut(s) 31, 50, 121, 458, 1018
BstDEI CTNAG 5 cut(s) 34, 126, 147, 324, 418
BstHHI GCGC 1 cut(s) 470
BstMAI GTCTC 2 cut(s) 342, 583
BstMCI CGRYCG 1 cut(s) 549
BstMWI GCNNNNNNNGC 4 cut(s) 20, 116, 336, 542
BstNSI RCATGY 2 cut(s) 209, 464
BstSCI CCNGG 2 cut(s) 1076, 1120
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 5 cut(s) 23, 119, 191, 417, 997
BstV2I GAAGAC 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 546
BtsIMutI CAGTG 4 cut(s) 155, 170, 606, 801
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 5 cut(s) 31, 50, 121, 458, 1018
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 2 cut(s) 119, 1016
Cfr13I GGNCC 5 cut(s) 122, 258, 318, 1014, 1080
Csp6I GTAC 6 cut(s) 306, 474, 660, 686, 855, 881
CspCI CAANNNNNGTGG 4 cut(s) 582, 617, 777, 812
CviAII CATG 4 cut(s) 26, 206, 461, 1084
CviQI GTAC 6 cut(s) 306, 474, 660, 686, 855, 881
DdeI CTNAG 5 cut(s) 34, 126, 147, 324, 418
EaeI YGGCCR 5 cut(s) 46, 546, 671, 866, 1018
EagI CGGCCG 1 cut(s) 546
EclXI CGGCCG 1 cut(s) 546
Eco24I GRGCYC 2 cut(s) 137, 1042
Eco31I GGTCTC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 546
Eco57I CTGAAG 1 cut(s) 237
EcoT22I ATGCAT 2 cut(s) 632, 827
EcoT38I GRGCYC 2 cut(s) 137, 1042
FaeI CATG 4 cut(s) 29, 209, 464, 1087
FaqI GGGAC 1 cut(s) 271
FatI CATG 4 cut(s) 25, 205, 460, 1083
Fnu4HI GCNGC 8 cut(s) 12, 105, 108, 180, 406, 546, 972, 986
FriOI GRGCYC 2 cut(s) 137, 1042
FseI GGCCGGCC 2 cut(s) 123, 1020
Fsp4HI GCNGC 8 cut(s) 12, 105, 108, 180, 406, 546, 972, 986
FspBI CTAG 2 cut(s) 18, 990
GlaI GCGC 1 cut(s) 469
GluI GCNGC 8 cut(s) 12, 105, 108, 180, 406, 546, 972, 986
HapII CCGG 6 cut(s) 120, 623, 818, 1017, 1078, 1121
HhaI GCGC 1 cut(s) 470
Hin1II CATG 4 cut(s) 29, 209, 464, 1087
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 7 cut(s) 248, 359, 713, 719, 908, 914, 1049
HpaII CCGG 6 cut(s) 120, 623, 818, 1017, 1078, 1121
HphI GGTGA 2 cut(s) 226, 527
Hpy166II GTNNAC 5 cut(s) 153, 161, 308, 415, 476
Hpy188I TCNGA 5 cut(s) 196, 421, 439, 718, 913
Hpy188III TCNNGA 4 cut(s) 623, 761, 818, 956
Hpy8I GTNNAC 5 cut(s) 153, 161, 308, 415, 476
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 71, 1100
HpyCH4III ACNGT 3 cut(s) 165, 690, 885
HpyCH4IV ACGT 4 cut(s) 411, 503, 771, 966
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 116, 336, 542
HpyF3I CTNAG 5 cut(s) 34, 126, 147, 324, 418
HpySE526I ACGT 4 cut(s) 411, 503, 771, 966
Hsp92II CATG 4 cut(s) 29, 209, 464, 1087
HspAI GCGC 1 cut(s) 468
Kpn2I TCCGGA 2 cut(s) 622, 817
KroI GCCGGC 2 cut(s) 119, 1016
KroNI GCCGGC 2 cut(s) 121, 1018
LmnI GCTCC 2 cut(s) 57, 132
Lsp1109I GCAGC 5 cut(s) 23, 119, 191, 417, 997
LweI GCATC 1 cut(s) 834
MaeI CTAG 2 cut(s) 18, 990
MaeII ACGT 4 cut(s) 411, 503, 771, 966
MaeIII GTNAC 2 cut(s) 515, 641
MbiI CCGCTC 1 cut(s) 130
MboII GAAGA 3 cut(s) 101, 243, 563
MhlI GDGCHC 5 cut(s) 25, 137, 155, 1042, 1116
MlsI TGGCCA 3 cut(s) 48, 673, 868
MluNI TGGCCA 3 cut(s) 48, 673, 868
MlyI GAGTC 5 cut(s) 257, 368, 713, 908, 1043
MmeI TCCRAC 2 cut(s) 741, 936
MnlI CCTC 5 cut(s) 70, 108, 122, 599, 794
Mox20I TGGCCA 3 cut(s) 48, 673, 868
Mph1103I ATGCAT 2 cut(s) 632, 827
MroI TCCGGA 2 cut(s) 622, 817
MroNI GCCGGC 2 cut(s) 119, 1016
MscI TGGCCA 3 cut(s) 48, 673, 868
MseI TTAA 2 cut(s) 981, 1067
MslI CAYNNNNRTG 1 cut(s) 313
Msp20I TGGCCA 3 cut(s) 48, 673, 868
MspI CCGG 6 cut(s) 120, 623, 818, 1017, 1078, 1121
MspR9I CCNGG 2 cut(s) 1078, 1122
Mva1269I GAATGC 3 cut(s) 446, 632, 827
MwoI GCNNNNNNNGC 4 cut(s) 20, 116, 336, 542
NaeI GCCGGC 2 cut(s) 121, 1018
NciI CCSGG 2 cut(s) 1078, 1122
NgoMIV GCCGGC 2 cut(s) 119, 1016
NlaIII CATG 4 cut(s) 29, 209, 464, 1087
NlaIV GGNNCC 3 cut(s) 134, 259, 320
NmuCI GTSAC 2 cut(s) 515, 641
NsiI ATGCAT 2 cut(s) 632, 827
NspI RCATGY 2 cut(s) 209, 464
OliI CACNNNNGTG 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 202
PciI ACATGT 1 cut(s) 205
PctI GAATGC 3 cut(s) 446, 632, 827
PdiI GCCGGC 2 cut(s) 121, 1018
PfeI GAWTC 2 cut(s) 713, 908
PflFI GACNNNGTC 1 cut(s) 575
PkrI GCNGC 8 cut(s) 13, 106, 109, 181, 407, 547, 973, 987
PleI GAGTC 5 cut(s) 256, 367, 713, 908, 1043
PpsI GAGTC 5 cut(s) 256, 367, 713, 908, 1043
PscI ACATGT 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 134, 259, 320
PspPI GGNCC 5 cut(s) 122, 258, 318, 1014, 1080
PsyI GACNNNGTC 1 cut(s) 575
RigI GGCCGGCC 2 cut(s) 123, 1020
RsaI GTAC 6 cut(s) 307, 475, 661, 687, 856, 882
RsaNI GTAC 6 cut(s) 306, 474, 660, 686, 855, 881
RseI CAYNNNNRTG 1 cut(s) 313
SaqAI TTAA 2 cut(s) 981, 1067
SatI GCNGC 8 cut(s) 12, 105, 108, 180, 406, 546, 972, 986
Sau96I GGNCC 5 cut(s) 122, 258, 318, 1014, 1080
ScaI AGTACT 2 cut(s) 687, 882
SchI GAGTC 5 cut(s) 257, 368, 713, 908, 1043
ScrFI CCNGG 2 cut(s) 1078, 1122
SduI GDGCHC 5 cut(s) 25, 137, 155, 1042, 1116
SetI ASST 8 cut(s) 42, 54, 62, 216, 414, 506, 774, 969
SfaNI GCATC 1 cut(s) 834
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 313
SmlI CTYRAG 2 cut(s) 99, 113
SmoI CTYRAG 2 cut(s) 99, 113
SpeI ACTAGT 1 cut(s) 17
SsiI CCGC 7 cut(s) 95, 104, 130, 345, 545, 972, 1109
SspI AATATT 1 cut(s) 1065
SspMI CTAG 2 cut(s) 18, 990
StyD4I CCNGG 2 cut(s) 1076, 1120
TaaI ACNGT 3 cut(s) 165, 690, 885
TaiI ACGT 4 cut(s) 414, 506, 774, 969
TaqI TCGA 3 cut(s) 738, 828, 933
TatI WGTACW 6 cut(s) 305, 473, 659, 685, 854, 880
TauI GCSGC 3 cut(s) 107, 548, 974
TfiI GAWTC 2 cut(s) 713, 908
Tru1I TTAA 2 cut(s) 981, 1067
Tru9I TTAA 2 cut(s) 981, 1067
TscAI CASTG 4 cut(s) 155, 170, 606, 801
TseFI GTSAC 2 cut(s) 515, 641
TseI GCWGC 5 cut(s) 11, 107, 179, 405, 985
Tsp45I GTSAC 2 cut(s) 515, 641
TspDTI ATGAA 1 cut(s) 555
TspRI CASTG 4 cut(s) 155, 170, 606, 801
Tth111I GACNNNGTC 1 cut(s) 575
VneI GTGCAC 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 2 cut(s) 209, 464
XspI CTAG 2 cut(s) 18, 990
ZrmI AGTACT 2 cut(s) 687, 882
Zsp2I ATGCAT 2 cut(s) 632, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.