Rw3G015710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000954
Physical Location & Seq
Reverse (-)
16278303 .. 16280863
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015710.1

Sequence Viewer

Length: 426 bp
ATGAGTTGCAGAAATATGTTGAAAGTGAGTGTCTTAATGTTGATTGCCTTGGCTTTGGCAGCAACTAGTGTTCATGCTCGCTTACATCTATTTGGTCAGTTGCTTACCTCCAAGAACCAACCAGACCCTAATTCTGGACGAGGGAAAATTCCATATCTAGTTTGCAGACGCATCTCTGACAATTGCGTTTGCGATAGGCGGGCGCCTCAGTTTGCAGAGTGCTATTGCAAGGACCGAAAACCAGCTGCCCCACTCAAAAAATCTGGTAATTTAACTAACTTCTCGAGTAATTTGTACAGAGCATACAATGCATCAATAACTGTACATGATGACTGTGTATCTTGCACACGTATGTGGCCTCCTGAAGCCAACACTTGCCTTTGCATTAACCACAGCAAGTCCAAGAAGCCAAATACTGCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.64

Weight (kDa)

9.5

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 2 cut(s) 296, 324
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 352
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 59, 245
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 71, 232
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 158
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 2 cut(s) 60, 246
BlsI GCNGC 2 cut(s) 61, 247
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 2 cut(s) 180, 320
BsaAI YACGTR 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 71, 232
BshFI GGCC 1 cut(s) 358
BshNI GGYRCC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 134
BsnI GGCC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 283
Bsp1407I TGTACA 2 cut(s) 294, 322
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 202
BsrGI TGTACA 2 cut(s) 294, 322
BssECI CCNNGG 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 322, 335
BstACI GRCGYC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 308
BstAUI TGTACA 2 cut(s) 294, 322
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 79, 201
BstDEI CTNAG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 59, 308
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 71, 232
BsuRI GGCC 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 79, 201
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 295, 323
CviAII CATG 2 cut(s) 74, 326
CviJI RGCY 5 cut(s) 53, 245, 358, 368, 409
CviKI_1 RGCY 5 cut(s) 53, 245, 358, 368, 409
CviQI GTAC 2 cut(s) 295, 323
DdeI CTNAG 1 cut(s) 207
DinI GGCGCC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 77, 329
FaiI YATR 6 cut(s) 17, 75, 154, 304, 327, 353
FatI CATG 2 cut(s) 73, 325
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 60, 246
Fsp4HI GCNGC 2 cut(s) 60, 246
FspBI CTAG 2 cut(s) 66, 158
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 60, 246
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 1 cut(s) 358
HgaI GACGC 1 cut(s) 177
HhaI GCGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 2 cut(s) 77, 329
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 135, 283, 362
HpyCH4III ACNGT 2 cut(s) 322, 335
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 8 cut(s) 9, 165, 215, 228, 311, 345, 384, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 308
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 349
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 2 cut(s) 77, 329
HspAI GCGC 1 cut(s) 203
KasI GGCGCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 120, 135, 249, 255, 375
Lsp1109I GCAGC 2 cut(s) 71, 232
LweI GCATC 2 cut(s) 180, 320
MaeI CTAG 2 cut(s) 66, 158
MaeII ACGT 1 cut(s) 349
MfeI CAATTG 1 cut(s) 181
MluCI AATT 5 cut(s) 130, 147, 181, 268, 289
Mly113I GGCGCC 1 cut(s) 203
MnlI CCTC 4 cut(s) 118, 134, 216, 369
Mph1103I ATGCAT 1 cut(s) 313
MseI TTAA 3 cut(s) 35, 272, 387
MslI CAYNNNNRTG 2 cut(s) 350, 352
MspA1I CMGCKG 1 cut(s) 245
MunI CAATTG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 59, 308
NarI GGCGCC 1 cut(s) 203
NlaIII CATG 2 cut(s) 77, 329
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 283
PkrI GCNGC 2 cut(s) 61, 247
PluTI GGCGCC 1 cut(s) 206
Ppu21I YACGTR 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 296, 324
RsaNI GTAC 2 cut(s) 295, 323
RseI CAYNNNNRTG 2 cut(s) 350, 352
SaqAI TTAA 3 cut(s) 35, 272, 387
SatI GCNGC 2 cut(s) 60, 246
Sau96I GGNCC 1 cut(s) 232
SetI ASST 3 cut(s) 110, 247, 352
SfaNI GCATC 2 cut(s) 180, 320
SfcI CTRYAG 1 cut(s) 417
SfoI GGCGCC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 283
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 350, 352
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 5 cut(s) 130, 147, 181, 268, 289
SsiI CCGC 1 cut(s) 199
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 2 cut(s) 66, 158
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 322, 335
TaiI ACGT 1 cut(s) 352
TaqI TCGA 1 cut(s) 284
TaqII GACCGA 1 cut(s) 249
TasI AATT 5 cut(s) 130, 147, 181, 268, 289
TatI WGTACW 2 cut(s) 294, 322
Tru1I TTAA 3 cut(s) 35, 272, 387
Tru9I TTAA 3 cut(s) 35, 272, 387
TseI GCWGC 2 cut(s) 59, 245
TspDTI ATGAA 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 283
XspI CTAG 2 cut(s) 66, 158
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.