Rroxscaffold_6G00420720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000954
Physical Location & Seq
Reverse (-)
41911371 .. 41912910
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420720.1

Sequence Viewer

Length: 312 bp
ATGTTGAAAGTAAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGATCTATTTGGCCAGCTGCTAACCTCCAAGAACCAACCAAATCCCAATTCTGACAAAGCACAAGTGCAGGTGATAGGATTAGAAAAATCTTCTATTCAAGTTAAGTCTTCAGGCGTCATTCCATATACAGAATGCATCAAAGTCTGCAAAATTTGTGCTTGTACACTAATCTGGCCCCCTGAGGCAAATTGGTGCATTGATTGCCGCGAGACTGAAGCTGAAGGCAGAGCCCTCCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.23

Weight (kDa)

7.57

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccII CGCG 1 cut(s) 276
AciI CCGC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 3 cut(s) 162, 303, 309
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 2 cut(s) 7, 167
AhlI ACTAGT 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 2 cut(s) 85, 287
AluI AGCT 2 cut(s) 85, 287
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 2 cut(s) 79, 242
ApeKI GCWGC 2 cut(s) 44, 85
ApoI RAATTY 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 249
BalI TGGCCA 1 cut(s) 81
BanII GRGCYC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 56, 72
BcoDI GTCTC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 310
BfuAI ACCTGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 45, 86, 274
BlsI GCNGC 3 cut(s) 46, 87, 275
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 245
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 56, 72
BsgI GTGCAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 81, 244
BsiHKAI GWGCWC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 2 cut(s) 81, 244
Bsp1286I GDGCHC 2 cut(s) 58, 301
Bsp1407I TGTACA 1 cut(s) 230
Bsp143I GATC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 274
BspANI GGCC 2 cut(s) 81, 244
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 2 cut(s) 53, 270
BstAUI TGTACA 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 30, 64, 83
BstDEI CTNAG 2 cut(s) 67, 249
BstDSI CCRYGG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 270
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 56, 72
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 81, 244
BtgI CCRYGG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 30, 64, 83
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 34, 59
CviJI RGCY 6 cut(s) 38, 81, 85, 244, 287, 299
CviKI_1 RGCY 6 cut(s) 38, 81, 85, 244, 287, 299
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 67, 249
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 301
Eco57I CTGAAG 3 cut(s) 162, 303, 309
Eco81I CCTNAGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 62
FaiI YATR 4 cut(s) 35, 60, 193, 195
FatI CATG 2 cut(s) 33, 58
Fnu4HI GCNGC 3 cut(s) 45, 86, 274
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 3 cut(s) 45, 86, 274
FspBI CTAG 2 cut(s) 51, 310
GluI GCNGC 3 cut(s) 45, 86, 274
HaeIII GGCC 2 cut(s) 81, 244
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 37, 62
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 136, 204, 216, 264
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 270
HpyF3I CTNAG 2 cut(s) 67, 249
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 37, 62
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 95, 122, 165, 226, 261
Lsp1109I GCAGC 2 cut(s) 56, 72
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 51, 310
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 150, 168
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 58, 301
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 3 cut(s) 115, 219, 256
MluNI TGGCCA 1 cut(s) 81
MnlI CCTC 3 cut(s) 103, 244, 311
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 206
MscI TGGCCA 1 cut(s) 81
MseI TTAA 2 cut(s) 20, 171
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 206
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 270
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 37, 62
NlaIV GGNNCC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 206
PaqCI CACCTGC 1 cut(s) 127
PctI GAATGC 1 cut(s) 206
PkrI GCNGC 3 cut(s) 46, 87, 275
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 20, 171
SatI GCNGC 3 cut(s) 45, 86, 274
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 243
SduI GDGCHC 2 cut(s) 58, 301
SetI ASST 4 cut(s) 87, 95, 141, 289
SfaNI GCATC 1 cut(s) 213
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 3 cut(s) 115, 219, 256
SsiI CCGC 1 cut(s) 274
SspMI CTAG 2 cut(s) 51, 310
StyI CCWWGG 1 cut(s) 33
TasI AATT 3 cut(s) 115, 219, 256
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 20, 171
Tru9I TTAA 2 cut(s) 20, 171
TseI GCWGC 2 cut(s) 44, 85
XapI RAATTY 1 cut(s) 219
XspI CTAG 2 cut(s) 51, 310
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.