Rorug03G0032300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000954
Physical Location & Seq
Reverse (-)
2542360 .. 2544218
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0032300.1

Sequence Viewer

Length: 633 bp
ATGGCTTTCTCTAAATCCATGGCCTTGTTAGCTGCTACTCTTCTTGTTCTGCTACCCATAGCTACTTACGCTGTGGACTGGCCGGATATTTCTCCTTCTATTGCCGATGAAATATGTAAACAAGTTGAGTGTGGAAAAGGAAATTGCAGCTTCAACTCCAGTGAGCCATTAGGCTATACCTGCGAGTGCGACCAAGGATGGAAGCGAACCGCTGAAGGCAACGATAATCTTAAGTTTCTCCCTTGTGTCATCCCTAACTGCACACTGGATTACGACGGTTGCCAAAAACCCCCTGAAGTTCGTAATTACACAGAAGTCCCACACAACTTATCTGTCTTTGATCCTTGCCACTGGGTTTACTGTGGAGAAGGTTCATGCGACAAGAACTCTACCTATCTATACGCACCAGAGTGTAAATGCAACTCAGGGGCTTCTAATCTTCTTGACGTCAGTGTATTCCCCTGCTACAAAGAATGCACCCTTCAACCTGACTGTGCTGCCCTTGGAATCAAAGTTGCAAATTCGACTAGTACCTCTCCCGATGGAACGAGTGACAGTAAAGCTACCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTGATGGTGTCTGTGGGTATGATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.78

Weight (kDa)

4.53

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 2 cut(s) 520, 584
AcuI CTGAAG 2 cut(s) 234, 315
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 1 cut(s) 532
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 154, 485
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 1 cut(s) 577
AleI CACNNNNGTG 1 cut(s) 409
AluBI AGCT 4 cut(s) 32, 62, 150, 563
AluI AGCT 4 cut(s) 32, 62, 150, 563
AlwI GGATC 1 cut(s) 335
AoxI GGCC 2 cut(s) 21, 80
ApeKI GCWGC 3 cut(s) 32, 147, 497
ApoI RAATTY 2 cut(s) 520, 584
BbvI GCAGC 3 cut(s) 19, 159, 484
BccI CCATC 3 cut(s) 192, 536, 601
BciT130I CCWGG 1 cut(s) 579
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 2 cut(s) 600, 629
BfrI CTTAAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 3 cut(s) 33, 148, 498
BlsI GCNGC 3 cut(s) 34, 149, 499
Bme1390I CCNGG 1 cut(s) 579
BmrFI CCNGG 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 615
BmuI ACTGGG 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 18, 193, 502
Bse1I ACTGG 5 cut(s) 83, 159, 270, 356, 589
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 3 cut(s) 18, 193, 502
BseGI GGATG 2 cut(s) 203, 249
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 5 cut(s) 83, 159, 270, 356, 589
BseXI GCAGC 3 cut(s) 19, 159, 484
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 2 cut(s) 23, 82
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 2 cut(s) 23, 82
Bsp143I GATC 1 cut(s) 340
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 23, 82
BspCNI CTCAG 1 cut(s) 437
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 230
BsrI ACTGG 5 cut(s) 83, 159, 270, 356, 589
BssECI CCNNGG 3 cut(s) 18, 193, 502
BssMI GATC 1 cut(s) 340
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 3 cut(s) 18, 193, 502
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 4 cut(s) 278, 362, 494, 557
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 424
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 203, 249
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 3 cut(s) 29, 68, 180
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 2 cut(s) 600, 629
BstV1I GCAGC 3 cut(s) 19, 159, 484
BsuRI GGCC 2 cut(s) 23, 82
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 203, 249
BtsIMutI CAGTG 4 cut(s) 166, 263, 349, 457
BveI ACCTGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 531
CviAII CATG 3 cut(s) 19, 375, 574
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 1 cut(s) 424
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 3 cut(s) 18, 193, 502
Eco57I CTGAAG 2 cut(s) 234, 315
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 3 cut(s) 18, 193, 502
ErhI CCWWGG 3 cut(s) 18, 193, 502
FaeI CATG 3 cut(s) 22, 378, 577
FaiI YATR 9 cut(s) 20, 59, 115, 177, 376, 400, 575, 602, 623
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 18, 374, 573
Fnu4HI GCNGC 3 cut(s) 33, 148, 498
FokI GGATG 2 cut(s) 210, 236
Fsp4HI GCNGC 3 cut(s) 33, 148, 498
FspBI CTAG 1 cut(s) 528
GluI GCNGC 3 cut(s) 33, 148, 498
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 2 cut(s) 23, 82
HapII CCGG 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 3 cut(s) 22, 378, 577
HinfI GANTC 1 cut(s) 507
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 76, 119, 358
Hpy188III TCNNGA 2 cut(s) 443, 539
Hpy8I GTNNAC 3 cut(s) 76, 119, 358
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 105, 209, 362, 491
HpyCH4III ACNGT 4 cut(s) 278, 362, 494, 557
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 5 cut(s) 147, 261, 420, 477, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 68, 180
HpyF3I CTNAG 1 cut(s) 424
HpySE526I ACGT 1 cut(s) 447
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 3 cut(s) 22, 378, 577
Kzo9I GATC 1 cut(s) 340
Lsp1109I GCAGC 3 cut(s) 19, 159, 484
LweI GCATC 1 cut(s) 615
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 551
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 2 cut(s) 32, 431
MluCI AATT 4 cut(s) 142, 304, 520, 584
MnlI CCTC 1 cut(s) 544
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 409
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 29, 68, 180
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 340
NlaIII CATG 3 cut(s) 22, 378, 577
NmuCI GTSAC 1 cut(s) 551
OliI CACNNNNGTG 1 cut(s) 409
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 507
PkrI GCNGC 3 cut(s) 34, 149, 499
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 409
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 33, 148, 498
Sau3AI GATC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 579
SfaNI GCATC 1 cut(s) 615
SfcI CTRYAG 2 cut(s) 600, 629
SmiMI CAYNNNNRTG 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 4 cut(s) 142, 304, 520, 584
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 3 cut(s) 18, 193, 502
TaaI ACNGT 4 cut(s) 278, 362, 494, 557
TaiI ACGT 1 cut(s) 450
TaqI TCGA 1 cut(s) 524
TasI AATT 4 cut(s) 142, 304, 520, 584
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 4 cut(s) 166, 270, 356, 457
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 3 cut(s) 32, 147, 497
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 3 cut(s) 123, 363, 562
TspRI CASTG 4 cut(s) 166, 270, 356, 457
Vha464I CTTAAG 1 cut(s) 230
XapI RAATTY 2 cut(s) 520, 584
XspI CTAG 1 cut(s) 528
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.