Rh3CG093400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000954
Physical Location & Seq
Forward (+)
7315162 .. 7357715
42554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG093400.1

Sequence Viewer

Length: 420 bp
ATGTTGCTTGCCATGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTAGATCTATTTGGCCAGCTGCTCACCTCCAAGAACCAACCAAATCCCAATTCTGAATGCCAGAAAATTCCGTTTCTACTATGCGACCGTGTCTGTGACGTTTGCATTTGCGATAGACGTGCTCCAGAGTTTGCAGAGTGCACTTGCGGACAGTGGAAACCTTATGCAGGACTCCAAAAATCTGACGAAGCACAAGTGCAGGTGATAGGATTAGAAAAATCTTCTATTAAGGCCAAGTCTTCGGGCGCCATTCCATATACAGAATGCATCAAAGTCTGCAAAATTTGTGCTTGTACACAAATGTGGCCCCCTGAGGCAAATTGGTGCATTGATTGCCGCGAGACTGAAGCTGAAGGCAGAGCCCTCCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.3

Weight (kDa)

5.84

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 290
AccII CGCG 1 cut(s) 384
AciI CCGC 2 cut(s) 192, 382
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 111, 327
AcuI CTGAAG 2 cut(s) 411, 417
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 212
AhlI ACTAGT 1 cut(s) 29
AjiI CACGTC 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AleI CACNNNNGTG 1 cut(s) 346
AluBI AGCT 2 cut(s) 64, 395
AluI AGCT 2 cut(s) 64, 395
Alw21I GWGCWC 3 cut(s) 37, 169, 188
Alw26I GTCTC 1 cut(s) 380
Alw44I GTGCAC 1 cut(s) 184
AoxI GGCC 3 cut(s) 58, 276, 350
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 23, 64
ApoI RAATTY 2 cut(s) 111, 327
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 61, 259
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 60
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 3 cut(s) 37, 169, 188
BbvI GCAGC 2 cut(s) 35, 51
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcoDI GTCTC 1 cut(s) 380
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 2 cut(s) 30, 418
BfoI RGCGCY 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 24, 65, 382
BlsI GCNGC 3 cut(s) 25, 66, 383
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 292, 353
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 2 cut(s) 35, 51
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 384
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 3 cut(s) 60, 278, 352
BshNI GGYRCC 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 3 cut(s) 37, 169, 188
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 380
BsmI GAATGC 2 cut(s) 107, 314
BsnI GGCC 3 cut(s) 60, 278, 352
Bsp1286I GDGCHC 4 cut(s) 37, 169, 188, 409
Bsp1407I TGTACA 1 cut(s) 338
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 192, 382
BspANI GGCC 3 cut(s) 60, 278, 352
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 292, 353
BspMI ACCTGC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 134, 198
BstACI GRCGYC 1 cut(s) 291
BstAPI GCANNNNNTGC 2 cut(s) 32, 378
BstAUI TGTACA 1 cut(s) 338
BstC8I GCNNGC 3 cut(s) 9, 43, 62
BstDEI CTNAG 2 cut(s) 46, 357
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 1 cut(s) 49
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 378
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 35, 51
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 3 cut(s) 60, 278, 352
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 203
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 3 cut(s) 9, 43, 62
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 339
CviAII CATG 2 cut(s) 13, 38
CviJI RGCY 7 cut(s) 17, 60, 64, 278, 352, 395, 407
CviKI_1 RGCY 7 cut(s) 17, 60, 64, 278, 352, 395, 407
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 46, 357
DinI GGCGCC 1 cut(s) 292
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 411, 417
Eco81I CCTNAGG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 409
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 16, 41
FaiI YATR 6 cut(s) 14, 39, 127, 210, 301, 303
FatI CATG 2 cut(s) 12, 37
Fnu4HI GCNGC 3 cut(s) 24, 65, 382
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 3 cut(s) 24, 65, 382
FspBI CTAG 2 cut(s) 30, 418
GlaI GCGC 1 cut(s) 292
GluI GCNGC 3 cut(s) 24, 65, 382
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 3 cut(s) 60, 278, 352
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 2 cut(s) 16, 41
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 1 cut(s) 216
HphI GGTGA 2 cut(s) 61, 259
Hpy166II GTNNAC 2 cut(s) 186, 341
Hpy188I TCNGA 2 cut(s) 100, 229
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 2 cut(s) 186, 341
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 134, 198
HpyCH4IV ACGT 2 cut(s) 144, 163
HpyCH4V TGCA 8 cut(s) 150, 179, 186, 212, 244, 312, 324, 372
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 378
HpyF3I CTNAG 2 cut(s) 46, 357
HpySE526I ACGT 2 cut(s) 144, 163
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 2 cut(s) 16, 41
HspAI GCGC 1 cut(s) 291
KasI GGCGCC 1 cut(s) 290
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 74, 119, 183, 198, 230, 369
Lsp1109I GCAGC 2 cut(s) 35, 51
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 30, 418
MaeII ACGT 2 cut(s) 144, 163
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 258, 276
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 4 cut(s) 37, 169, 188, 409
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 4 cut(s) 94, 111, 327, 364
MluNI TGGCCA 1 cut(s) 60
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 3 cut(s) 82, 352, 419
Mox20I TGGCCA 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 314
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 346
Msp20I TGGCCA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 64
Mva1269I GAATGC 2 cut(s) 107, 314
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 378
NarI GGCGCC 1 cut(s) 291
NcoI CCATGG 1 cut(s) 12
NdeII GATC 1 cut(s) 49
NlaIII CATG 2 cut(s) 16, 41
NlaIV GGNNCC 2 cut(s) 292, 353
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 346
PaqCI CACCTGC 1 cut(s) 235
PctI GAATGC 2 cut(s) 107, 314
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 25, 66, 383
PleI GAGTC 1 cut(s) 210
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 292, 353
PspPI GGNCC 1 cut(s) 351
PsuI RGATCY 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 64
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 3 cut(s) 24, 65, 382
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 210
SduI GDGCHC 4 cut(s) 37, 169, 188, 409
SetI ASST 7 cut(s) 66, 74, 147, 166, 208, 249, 397
SfaNI GCATC 1 cut(s) 321
SfoI GGCGCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 346
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 4 cut(s) 94, 111, 327, 364
SsiI CCGC 2 cut(s) 192, 382
SspDI GGCGCC 1 cut(s) 290
SspMI CTAG 2 cut(s) 30, 418
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 134, 198
TaiI ACGT 2 cut(s) 147, 166
TasI AATT 4 cut(s) 94, 111, 327, 364
TatI WGTACW 1 cut(s) 338
TauI GCSGC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 23, 64
Tsp45I GTSAC 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 203
Tth111I GACNNNGTC 1 cut(s) 134
VneI GTGCAC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 2 cut(s) 111, 327
XspI CTAG 2 cut(s) 30, 418
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.