RLG00000019362

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000954
Physical Location & Seq
Reverse (-)
50856073 .. 50859105
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019362

Sequence Viewer

Length: 963 bp
ATGAGTTTCAGAAATATGTTGAAAGTGAGTTTCTTAATGTTGCTTGCCATGGCTTTGGCAGCAACAAATACTCATGCTCGCTTAGATCTATTTGGCCACCAGCTGCTTACCTCCAAGAGCCAACCGGATCCCAATTCTGAAGAAGCGGAGATGCTCAAATCAGCAACCACTAAAGCGGCCGAAAAATTGATGAAGGCAGCAGCTGTAGTACAAGAAGAGAAACCGAGTAGCAGCAAAGTGGAAGCAGATACAATTCCATATTCAGAATGCCAGAAAAACTGCAACTATACATGTGTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAGCAAATTATCAACCACTAAAGCTGCAAAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGCAGCAGCATAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAGCTGCAAGTATACATGTGCTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGTTGGATCAAGCAAATTATCAACCACTAAAGCGGCCGAAAATTTGCTTAAGCCAGCTGCTGTAGTCCAAGAAGAGAAACCGAGTAGCAGCATAGTGAAAGCAGATACAATTCCATATTCAGAATGCCAGGAAAGCTGCAAGTATACATGTCTTTGCACACTTATTTGGCCACCTGAACTATCACAGTGCATTTGTGCTGGATCAAACAAATTATCAACCACTAAAGAAGCCGAAAAATTGCATGAGGAATTGGACTTGGTGTCCAAACCAGTTGCAAAATTGGAAGGAAGCTTTCTTCCATATCCGGAATGCATCGAAAAATGTGATGAGTGTGTAATCTGCACAAGAGTTTATCCAATTGAGGCGGCATATTGCTATTGTGGCATGAATCCATCAATTCAGAAATCGGGCATAGCCCTCCCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

34.83

Weight (kDa)

5.63

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 482, 677
AccIII TCCGGA 1 cut(s) 838
AciI CCGC 4 cut(s) 146, 176, 566, 899
AclWI GGATC 5 cut(s) 122, 135, 352, 547, 742
AcoI YGGCCR 6 cut(s) 94, 177, 311, 506, 567, 701
AcsI RAATTY 2 cut(s) 379, 574
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 210
AflII CTTAAG 2 cut(s) 386, 581
AflIII ACRYGT 3 cut(s) 290, 485, 680
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 793
AjnI CCWGG 2 cut(s) 465, 660
AluBI AGCT 8 cut(s) 103, 203, 371, 395, 474, 590, 669, 825
AluI AGCT 8 cut(s) 103, 203, 371, 395, 474, 590, 669, 825
AlwI GGATC 5 cut(s) 122, 135, 352, 547, 742
AlwNI CAGNNNCTG 3 cut(s) 203, 398, 593
Aor13HI TCCGGA 1 cut(s) 838
AoxI GGCC 6 cut(s) 94, 177, 311, 506, 567, 701
ApoI RAATTY 2 cut(s) 379, 574
BalI TGGCCA 4 cut(s) 96, 313, 508, 703
BamHI GGATCC 1 cut(s) 127
BccI CCATC 1 cut(s) 934
BciT130I CCWGG 2 cut(s) 467, 662
BfaI CTAG 1 cut(s) 961
BfmI CTRYAG 3 cut(s) 204, 399, 594
BfrI CTTAAG 2 cut(s) 386, 581
BglII AGATCT 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 467, 662
BmeRI GACNNNNNGTC 1 cut(s) 793
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 467, 662
BmsI GCATC 2 cut(s) 141, 855
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 2 cut(s) 124, 838
Bse1I ACTGG 1 cut(s) 803
BseAI TCCGGA 1 cut(s) 838
BseBI CCWGG 2 cut(s) 467, 662
BseDI CCNNGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 803
BseX3I CGGCCG 2 cut(s) 177, 567
BsgI GTGCAG 1 cut(s) 859
Bsh1285I CGRYCG 2 cut(s) 180, 570
BshFI GGCC 6 cut(s) 96, 179, 313, 508, 569, 703
BsiEI CGRYCG 2 cut(s) 180, 570
BsiSI CCGG 2 cut(s) 125, 839
BsmI GAATGC 4 cut(s) 272, 467, 662, 848
BsnI GGCC 6 cut(s) 96, 179, 313, 508, 569, 703
Bsp13I TCCGGA 1 cut(s) 838
Bsp143I GATC 5 cut(s) 85, 127, 344, 539, 734
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 4 cut(s) 146, 176, 566, 899
BspANI GGCC 6 cut(s) 96, 179, 313, 508, 569, 703
BspEI TCCGGA 1 cut(s) 838
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 5 cut(s) 122, 135, 352, 547, 742
BspTI CTTAAG 2 cut(s) 386, 581
BsrI ACTGG 1 cut(s) 803
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 5 cut(s) 85, 127, 344, 539, 734
BssNAI GTATAC 2 cut(s) 483, 678
BssT1I CCWWGG 1 cut(s) 48
Bst1107I GTATAC 2 cut(s) 483, 678
Bst2UI CCWGG 2 cut(s) 467, 662
Bst4CI ACNGT 3 cut(s) 330, 525, 720
Bst6I CTCTTC 3 cut(s) 210, 405, 600
BstAFI CTTAAG 2 cut(s) 386, 581
BstC8I GCNNGC 5 cut(s) 45, 79, 393, 493, 588
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 5 cut(s) 88, 130, 347, 542, 737
BstMBI GATC 5 cut(s) 85, 127, 344, 539, 734
BstMCI CGRYCG 2 cut(s) 180, 570
BstMWI GCNNNNNNNGC 4 cut(s) 59, 471, 666, 915
BstNI CCWGG 2 cut(s) 467, 662
BstNSI RCATGY 3 cut(s) 294, 489, 684
BstSCI CCNGG 2 cut(s) 465, 660
BstSFI CTRYAG 3 cut(s) 204, 399, 594
BstX2I RGATCY 2 cut(s) 85, 127
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 2 cut(s) 85, 127
BstZ17I GTATAC 2 cut(s) 483, 678
BstZI CGGCCG 2 cut(s) 177, 567
BsuRI GGCC 6 cut(s) 96, 179, 313, 508, 569, 703
BtgI CCRYGG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 335, 530, 725
Cac8I GCNNGC 5 cut(s) 45, 79, 393, 493, 588
CaiI CAGNNNCTG 3 cut(s) 203, 398, 593
Csp6I GTAC 1 cut(s) 209
CviAII CATG 7 cut(s) 49, 74, 291, 486, 681, 776, 919
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 82
DpnI GATC 5 cut(s) 87, 129, 346, 541, 736
DpnII GATC 5 cut(s) 85, 127, 344, 539, 734
DriI GACNNNNNGTC 1 cut(s) 793
EaeI YGGCCR 6 cut(s) 94, 177, 311, 506, 567, 701
EagI CGGCCG 2 cut(s) 177, 567
Eam1104I CTCTTC 3 cut(s) 210, 405, 600
Eam1105I GACNNNNNGTC 1 cut(s) 793
EarI CTCTTC 3 cut(s) 210, 405, 600
EclXI CGGCCG 2 cut(s) 177, 567
Eco130I CCWWGG 1 cut(s) 48
Eco52I CGGCCG 2 cut(s) 177, 567
Eco57I CTGAAG 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 465, 660
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 7 cut(s) 52, 77, 294, 489, 684, 779, 922
FatI CATG 7 cut(s) 48, 73, 290, 485, 680, 775, 918
FblI GTMKAC 2 cut(s) 482, 677
FspBI CTAG 1 cut(s) 961
HaeIII GGCC 6 cut(s) 96, 179, 313, 508, 569, 703
HapII CCGG 2 cut(s) 125, 839
Hin1II CATG 7 cut(s) 52, 77, 294, 489, 684, 779, 922
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 1 cut(s) 922
HpaII CCGG 2 cut(s) 125, 839
Hpy166II GTNNAC 2 cut(s) 483, 678
Hpy188I TCNGA 6 cut(s) 11, 139, 265, 460, 655, 936
Hpy188III TCNNGA 1 cut(s) 839
Hpy8I GTNNAC 2 cut(s) 483, 678
HpyAV CCTTC 2 cut(s) 187, 812
HpyCH4III ACNGT 3 cut(s) 330, 525, 720
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 471, 666, 915
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 7 cut(s) 52, 77, 294, 489, 684, 779, 922
Kpn2I TCCGGA 1 cut(s) 838
Kzo9I GATC 5 cut(s) 85, 127, 344, 539, 734
LweI GCATC 2 cut(s) 141, 855
MaeI CTAG 1 cut(s) 961
MalI GATC 5 cut(s) 87, 129, 346, 541, 736
MboI GATC 5 cut(s) 85, 127, 344, 539, 734
MboII GAAGA 5 cut(s) 152, 227, 422, 617, 821
MfeI CAATTG 1 cut(s) 891
MflI RGATCY 2 cut(s) 85, 127
MlsI TGGCCA 4 cut(s) 96, 313, 508, 703
MluNI TGGCCA 4 cut(s) 96, 313, 508, 703
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 4 cut(s) 121, 772, 889, 962
Mox20I TGGCCA 4 cut(s) 96, 313, 508, 703
Mph1103I ATGCAT 1 cut(s) 848
MroI TCCGGA 1 cut(s) 838
MscI TGGCCA 4 cut(s) 96, 313, 508, 703
MseI TTAA 3 cut(s) 35, 387, 582
Msp20I TGGCCA 4 cut(s) 96, 313, 508, 703
MspA1I CMGCKG 4 cut(s) 103, 203, 395, 590
MspCI CTTAAG 2 cut(s) 386, 581
MspI CCGG 2 cut(s) 125, 839
MspR9I CCNGG 2 cut(s) 467, 662
MunI CAATTG 1 cut(s) 891
Mva1269I GAATGC 4 cut(s) 272, 467, 662, 848
MvaI CCWGG 2 cut(s) 467, 662
MwoI GCNNNNNNNGC 4 cut(s) 59, 471, 666, 915
NcoI CCATGG 1 cut(s) 48
NdeII GATC 5 cut(s) 85, 127, 344, 539, 734
NlaIII CATG 7 cut(s) 52, 77, 294, 489, 684, 779, 922
NlaIV GGNNCC 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 848
NspI RCATGY 3 cut(s) 294, 489, 684
PciI ACATGT 3 cut(s) 290, 485, 680
PctI GAATGC 4 cut(s) 272, 467, 662, 848
PfeI GAWTC 1 cut(s) 922
PscI ACATGT 3 cut(s) 290, 485, 680
Psp6I CCWGG 2 cut(s) 465, 660
PspGI CCWGG 2 cut(s) 465, 660
PspN4I GGNNCC 1 cut(s) 129
PstNI CAGNNNCTG 3 cut(s) 203, 398, 593
PsuI RGATCY 2 cut(s) 85, 127
PvuII CAGCTG 4 cut(s) 103, 203, 395, 590
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 35, 387, 582
Sau3AI GATC 5 cut(s) 85, 127, 344, 539, 734
ScrFI CCNGG 2 cut(s) 467, 662
SfaNI GCATC 2 cut(s) 141, 855
SfcI CTRYAG 3 cut(s) 204, 399, 594
SmlI CTYRAG 2 cut(s) 386, 581
SmoI CTYRAG 2 cut(s) 386, 581
SsiI CCGC 4 cut(s) 146, 176, 566, 899
SspMI CTAG 1 cut(s) 961
StyD4I CCNGG 2 cut(s) 465, 660
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 330, 525, 720
TaqI TCGA 1 cut(s) 849
TatI WGTACW 1 cut(s) 208
TauI GCSGC 3 cut(s) 179, 569, 902
TfiI GAWTC 1 cut(s) 922
Tru1I TTAA 3 cut(s) 35, 387, 582
Tru9I TTAA 3 cut(s) 35, 387, 582
TscAI CASTG 3 cut(s) 335, 530, 725
TspDTI ATGAA 2 cut(s) 206, 935
TspRI CASTG 3 cut(s) 335, 530, 725
Vha464I CTTAAG 2 cut(s) 386, 581
XapI RAATTY 2 cut(s) 379, 574
XceI RCATGY 3 cut(s) 294, 489, 684
XmiI GTMKAC 2 cut(s) 482, 677
XspI CTAG 1 cut(s) 961
Zsp2I ATGCAT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.