Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

12143110 .. 12146446

Gene Structure 3337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGTAGGAAGAGAGTTTTGATAGTTGGAGGCACAGGCTACTTGGGACAGCATGTATTGCAAGGCTTTTCAGAGATTCAAGAAACCACTCTTTGTGATCTGGCATTTACCCACCACTCAAGTCCTCCTCCCCAAGCTTTGCTCAATGCGTTTCCTACTGTGCTGCCTTTCTCTGTGGATTTGAAGACTGGCATTGGATTTGAAGCCATTTCTCATCAGTTTGGTCCGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCCGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCAGCTATGTCAGTTAATGTGCCATCTTCTCTTGTAAATTGGTTATCGAGCTTAGAAGAGAGTAACTATCTTCTGATCCATTTGTCGACTGATCAAGTTTATGAAGGGGTGAAGTCCTTTTACAAAGAAGATGATGAAGTTGTTCCAGTAAATGTTTATGGGAAATCAAAAGTGGCAGCTGAGCAGTTCATTACTGAGAAATGCTCAAACTATGCAATTTTGAGAAGCAGTATCATCTTTGGGCCACAAACAATCTCACCGGTTTCAAAATCTCTTCCAATTCAGTGGGTTGATGGTGTCCTCTCCAAAGGAAATACAACAGAATTCTTTCATGATGAGTTTCGATGCCCTGTGTATGTAAAGGATGTTGTAGGAATCATACTTGCTTTGTCTAAGACATGGATATCAGAGGCTAAGCAAAGAAAATTACTACTGAATGTTGGTGGACCAGACAGGGTATCTCGTGTTCAAATGGCTGAGACGGTTGCTGATATAAGGGGATATAACCTCTCATTAATTAAATCTGTATCTGCATCATCGGTTGATCGTGGAGTTATGTCTCCCGCTGACATATCCATGGACATAACTAAGCTAGTTCAGACGCTTGGAATTTCTCCTGTTTCATTTCGAGATGGTGTTAGATTGACGCTTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

317

Amino Acids

34.44

Weight (kDa)

5.72

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	5 - 314	4.1e-39	RmlD substrate binding domain
Epimerase	PF01370	6 - 229	6.9e-18	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	7 - 176	6.4e-07	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	377
AciI	CCGC	2 cut(s)	227, 855
AclWI	GGATC	3 cut(s)	278, 291, 361
AcsI	RAATTY	2 cut(s)	614, 900
AgeI	ACCGGT	1 cut(s)	550
AgsI	TTSAA	6 cut(s)	80, 184, 203, 558, 761, 944
AluBI	AGCT	5 cut(s)	137, 296, 342, 470, 883
AluI	AGCT	5 cut(s)	137, 296, 342, 470, 883
Alw26I	GTCTC	2 cut(s)	764, 855
AlwI	GGATC	3 cut(s)	278, 291, 361
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	5 cut(s)	163, 251, 290, 293, 467
ApoI	RAATTY	2 cut(s)	614, 900
AseI	ATTAAT	1 cut(s)	806
AsiGI	ACCGGT	1 cut(s)	550
Asp700I	GAANNNNTTC	2 cut(s)	432, 618
AspS9I	GGNCC	3 cut(s)	224, 533, 737
AsuHPI	GGTGA	2 cut(s)	412, 540
AvaII	GGWCC	2 cut(s)	224, 737
BamHI	GGATCC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BauI	CACGAG	2 cut(s)	267, 753
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	5 cut(s)	150, 238, 277, 305, 479
BccI	CCATC	3 cut(s)	322, 578, 917
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	764, 855
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	5 cut(s)	164, 252, 291, 294, 468
BlpI	GCTNAGC	2 cut(s)	471, 705
BlsI	GCNGC	5 cut(s)	165, 253, 292, 295, 469
Bme18I	GGWCC	2 cut(s)	224, 737
BmgT120I	GGNCC	3 cut(s)	224, 533, 737
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	2 cut(s)	626, 833
BpiI	GAAGAC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
Bpu1102I	GCTNAGC	2 cut(s)	471, 705
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	867
BsaWI	WCCGGW	1 cut(s)	550
Bse118I	RCCGGY	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	193, 437
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	1 cut(s)	661
BseMII	CTCAG	3 cut(s)	462, 477, 759
BseNI	ACTGG	2 cut(s)	193, 437
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	5 cut(s)	150, 238, 277, 305, 479
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	535
BshTI	ACCGGT	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	764, 855
BsmBI	CGTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	535
Bsp143I	GATC	5 cut(s)	97, 283, 366, 382, 835
Bsp1720I	GCTNAGC	2 cut(s)	471, 705
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	2 cut(s)	227, 855
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	3 cut(s)	463, 478, 760
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	3 cut(s)	278, 291, 361
BsrFI	RCCGGY	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	193, 437
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	5 cut(s)	97, 283, 366, 382, 835
BssSI	CACGAG	2 cut(s)	267, 753
BssT1I	CCWWGG	1 cut(s)	867
Bst2BI	CACGAG	2 cut(s)	267, 753
Bst4CI	ACNGT	3 cut(s)	160, 248, 775
Bst6I	CTCTTC	3 cut(s)	5, 342, 570
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstDEI	CTNAG	7 cut(s)	343, 471, 486, 684, 705, 768, 879
BstDSI	CCRYGG	1 cut(s)	867
BstF5I	GGATG	1 cut(s)	661
BstKTI	GATC	5 cut(s)	100, 286, 369, 385, 838
BstMAI	GTCTC	2 cut(s)	764, 855
BstMBI	GATC	5 cut(s)	97, 283, 366, 382, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	150, 238, 277, 305, 479
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	1 cut(s)	581
CciI	TCATGA	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	224, 533, 737
CseI	GACGC	2 cut(s)	901, 946
CspAI	ACCGGT	1 cut(s)	550
CviAII	CATG	4 cut(s)	53, 623, 690, 868
DdeI	CTNAG	7 cut(s)	343, 471, 486, 684, 705, 768, 879
DpnI	GATC	5 cut(s)	99, 285, 368, 384, 837
DpnII	GATC	5 cut(s)	97, 283, 366, 382, 835
Eam1104I	CTCTTC	3 cut(s)	5, 342, 570
EarI	CTCTTC	3 cut(s)	5, 342, 570
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	867
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	2 cut(s)	224, 737
EcoRI	GAATTC	1 cut(s)	614
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	867
Esp3I	CGTCTC	1 cut(s)	764
FaeI	CATG	4 cut(s)	56, 626, 693, 871
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	52, 622, 689, 867
FauI	CCCGC	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	377
Fnu4HI	GCNGC	5 cut(s)	164, 252, 291, 294, 468
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	5 cut(s)	164, 252, 291, 294, 468
FspBI	CTAG	1 cut(s)	884
GluI	GCNGC	5 cut(s)	164, 252, 291, 294, 468
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	2 cut(s)	901, 946
Hin1II	CATG	4 cut(s)	56, 626, 693, 871
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	76, 666
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	2 cut(s)	412, 540
Hpy166II	GTNNAC	3 cut(s)	244, 378, 737
Hpy188I	TCNGA	4 cut(s)	73, 366, 700, 891
Hpy188III	TCNNGA	3 cut(s)	80, 623, 920
Hpy8I	GTNNAC	3 cut(s)	244, 378, 737
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	3 cut(s)	160, 248, 775
HpyCH4V	TGCA	5 cut(s)	61, 254, 293, 506, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	7 cut(s)	343, 471, 486, 684, 705, 768, 879
Hsp92II	CATG	4 cut(s)	56, 626, 693, 871
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	97, 283, 366, 382, 835
Lsp1109I	GCAGC	5 cut(s)	150, 238, 277, 305, 479
LweI	GCATC	2 cut(s)	626, 833
MaeI	CTAG	1 cut(s)	884
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	5 cut(s)	99, 285, 368, 384, 837
MboI	GATC	5 cut(s)	97, 283, 366, 382, 835
MboII	GAAGA	7 cut(s)	22, 196, 309, 353, 359, 431, 557
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	7 cut(s)	328, 507, 570, 614, 716, 807, 900
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	23, 135, 138, 276, 602, 694, 809
MroXI	GAANNNNTTC	2 cut(s)	432, 618
MseI	TTAA	3 cut(s)	306, 806, 810
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	2 cut(s)	470, 857
MspI	CCGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	5 cut(s)	97, 283, 366, 382, 835
NlaIII	CATG	4 cut(s)	56, 626, 693, 871
NlaIV	GGNNCC	1 cut(s)	285
NspI	RCATGY	1 cut(s)	56
PacI	TTAATTAA	1 cut(s)	810
PagI	TCATGA	1 cut(s)	622
PdmI	GAANNNNTTC	2 cut(s)	432, 618
PfeI	GAWTC	2 cut(s)	76, 666
PinAI	ACCGGT	1 cut(s)	550
PkrI	GCNGC	5 cut(s)	165, 253, 292, 295, 469
PshBI	ATTAAT	1 cut(s)	806
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	3 cut(s)	224, 533, 737
PsrI	GAACNNNNNNTAC	2 cut(s)	741, 773
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	866
SalI	GTCGAC	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	306, 806, 810
SatI	GCNGC	5 cut(s)	164, 252, 291, 294, 468
Sau3AI	GATC	5 cut(s)	97, 283, 366, 382, 835
Sau96I	GGNCC	3 cut(s)	224, 533, 737
SetI	ASST	6 cut(s)	139, 298, 344, 472, 801, 885
SfaNI	GCATC	2 cut(s)	626, 833
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	224, 737
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	7 cut(s)	328, 507, 570, 614, 716, 807, 900
SsiI	CCGC	2 cut(s)	227, 855
SspMI	CTAG	1 cut(s)	884
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	3 cut(s)	160, 248, 775
TaqI	TCGA	4 cut(s)	338, 377, 634, 919
TasI	AATT	7 cut(s)	328, 507, 570, 614, 716, 807, 900
TfiI	GAWTC	2 cut(s)	76, 666
Tru1I	TTAA	3 cut(s)	306, 806, 810
Tru9I	TTAA	3 cut(s)	306, 806, 810
TscAI	CASTG	1 cut(s)	581
TseI	GCWGC	5 cut(s)	163, 251, 290, 293, 467
TspDTI	ATGAA	5 cut(s)	408, 441, 469, 611, 903
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	224, 737
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	2 cut(s)	614, 900
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	377
XmnI	GAANNNNTTC	2 cut(s)	432, 618
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.