Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

33865701 .. 33870126

Gene Structure 4426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0235000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCTTGTGTAGGAGGTGCGTGTGCTTATGCCAATGATGTAGATCAGCCTCCCTTTTCTAAATTGGTTTCTGCCGGAGGGGCTTCATTGTTCAAATCAGGGAAAGGATGTGGAGCTTGTTATGAGGTCAAGTGCACCGGTAATGCTGCGTGCTCGGGGAATCCTGTGACTGTTGTTATAACCGATGAGTGCCCTGGAGGTCCATGGGCTTCTGATGCTGTTCATTTTGATTTGAGTGGCTATGCTTTTGGAGCCATGGCCAATTCTGGCAAAGAATCTCGACTACGGAATGCTGGAGTCCTTCAGGTTCAACATAGAAGAGTGGACTCGGGTTCAAACCCTTACTATCTTGCTGTTGTAGTAGAATTTGAAGCTGGACCTGGTGCCCTATCTGCACTTAAGCTTAAACAAGGTCAAGGTAACTCAGACTGGCTTCCCATGCAGGAATGTTGGGGTGCAGATTGGAAATTTAACTCCGGCTCACAGTTGAAGGGACCGTTATCTATAAGAATAACTGCAGATTTCGGCCAAACCCTAGTTGCAAATGACGTGATTCCGGCTGGCTGGCACCCCGGTCAAACTTATCGCTCGGTTGTGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

201

Amino Acids

21.04

Weight (kDa)

6.27

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	24 - 104	3e-18	Lytic transglycolase
Expansin_C	PF01357	107 - 186	1.2e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	383, 567
AcoI	YGGCCR	2 cut(s)	258, 526
AcsI	RAATTY	2 cut(s)	365, 467
AcuI	CTGAAG	1 cut(s)	287
AflII	CTTAAG	1 cut(s)	398
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	94, 311, 336, 371, 490
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	193, 379
AluBI	AGCT	3 cut(s)	116, 374, 403
AluI	AGCT	3 cut(s)	116, 374, 403
Alw21I	GWGCWC	2 cut(s)	137, 155
Alw44I	GTGCAC	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	154, 328
AoxI	GGCC	2 cut(s)	258, 526
ApaLI	GTGCAC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	365, 467
AsiGI	ACCGGT	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	200, 377, 494
AsuC2I	CCSGG	1 cut(s)	573
AvaI	CYCGRG	2 cut(s)	154, 328
AvaII	GGWCC	3 cut(s)	200, 377, 494
BaeGI	GKGCMC	3 cut(s)	137, 194, 388
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	383, 567
Bbv12I	GWGCWC	2 cut(s)	137, 155
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	195, 381
BcnI	CCSGG	1 cut(s)	573
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	516
BfrI	CTTAAG	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	3 cut(s)	195, 381, 573
Bme18I	GGWCC	3 cut(s)	200, 377, 494
BmeT110I	CYCGRG	2 cut(s)	154, 328
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	200, 377, 494
BmiI	GGNNCC	4 cut(s)	253, 385, 495, 569
BmrFI	CCNGG	3 cut(s)	195, 381, 573
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	2 cut(s)	216, 315
BpuMI	CCSGG	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	193, 203, 255, 571
BsaWI	WCCGGW	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	195, 381
BseDI	CCNNGG	4 cut(s)	193, 203, 255, 571
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	3 cut(s)	137, 194, 388
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	2 cut(s)	378, 477
BshFI	GGCC	2 cut(s)	260, 528
BshNI	GGYRCC	2 cut(s)	383, 567
BshTI	ACCGGT	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	137, 155
BsiHKCI	CYCGRG	2 cut(s)	154, 328
BsiSI	CCGG	5 cut(s)	75, 138, 477, 557, 573
BslFI	GGGAC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	260, 528
BsoBI	CYCGRG	2 cut(s)	154, 328
Bsp1286I	GDGCHC	4 cut(s)	137, 155, 194, 388
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	2 cut(s)	203, 255
BspANI	GGCC	2 cut(s)	260, 528
BspCNI	CTCAG	1 cut(s)	437
BspLI	GGNNCC	4 cut(s)	253, 385, 495, 569
BspMAI	CTGCAG	1 cut(s)	520
BspT107I	GGYRCC	2 cut(s)	383, 567
BspTI	CTTAAG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	193, 203, 255, 571
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	203, 255
Bst2UI	CCWGG	2 cut(s)	195, 381
Bst4CI	ACNGT	3 cut(s)	172, 486, 498
Bst6I	CTCTTC	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	151, 562, 566
BstDEI	CTNAG	1 cut(s)	424
BstDSI	CCRYGG	2 cut(s)	203, 255
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 215, 251, 392, 439
BstNI	CCWGG	2 cut(s)	195, 381
BstSCI	CCNGG	3 cut(s)	193, 379, 571
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	3 cut(s)	137, 194, 388
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	260, 528
BtgI	CCRYGG	2 cut(s)	203, 255
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	151, 562, 566
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	200, 377, 494
CsiI	ACCWGGT	1 cut(s)	379
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	3 cut(s)	204, 256, 439
DdeI	CTNAG	1 cut(s)	424
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	2 cut(s)	258, 526
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	203, 255
Eco47I	GGWCC	3 cut(s)	200, 377, 494
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	154, 328
EcoRII	CCWGG	2 cut(s)	193, 379
EcoT14I	CCWWGG	2 cut(s)	203, 255
ErhI	CCWWGG	2 cut(s)	203, 255
FaeI	CATG	3 cut(s)	207, 259, 442
FaiI	YATR	9 cut(s)	30, 123, 179, 205, 243, 257, 315, 440, 506
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	3 cut(s)	203, 255, 438
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	216, 315
HaeIII	GGCC	2 cut(s)	260, 528
HapII	CCGG	5 cut(s)	75, 138, 477, 557, 573
Hin1II	CATG	3 cut(s)	207, 259, 442
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	160, 275, 297, 326, 553
HpaII	CCGG	5 cut(s)	75, 138, 477, 557, 573
Hpy166II	GTNNAC	3 cut(s)	135, 325, 598
Hpy188I	TCNGA	2 cut(s)	214, 427
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	3 cut(s)	135, 325, 598
HpyAV	CCTTC	2 cut(s)	311, 484
HpyCH4III	ACNGT	3 cut(s)	172, 486, 498
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	6 cut(s)	135, 395, 442, 458, 518, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 215, 251, 392, 439
HpyF3I	CTNAG	1 cut(s)	424
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	3 cut(s)	207, 259, 442
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	113, 251
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	205
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	166, 419
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	330
MhlI	GDGCHC	4 cut(s)	137, 155, 194, 388
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	4 cut(s)	62, 262, 365, 467
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	306, 320
MnlI	CCTC	5 cut(s)	8, 60, 71, 118, 191
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	3 cut(s)	399, 405, 471
Msp20I	TGGCCA	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	5 cut(s)	75, 138, 477, 557, 573
MspR9I	CCNGG	3 cut(s)	195, 381, 573
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	2 cut(s)	195, 381
MwoI	GCNNNNNNNGC	5 cut(s)	80, 215, 251, 392, 439
NciI	CCSGG	1 cut(s)	573
NcoI	CCATGG	2 cut(s)	203, 255
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	3 cut(s)	207, 259, 442
NlaIV	GGNNCC	4 cut(s)	253, 385, 495, 569
NmuCI	GTSAC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	160, 275, 553
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	305, 320
PpsI	GAGTC	2 cut(s)	305, 320
PsiI	TTATAA	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	193, 379
PspGI	CCWGG	2 cut(s)	193, 379
PspN4I	GGNNCC	4 cut(s)	253, 385, 495, 569
PspPI	GGNCC	3 cut(s)	200, 377, 494
PstI	CTGCAG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	399, 405, 471
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	3 cut(s)	200, 377, 494
SchI	GAGTC	2 cut(s)	306, 320
ScrFI	CCNGG	3 cut(s)	195, 381, 573
SduI	GDGCHC	4 cut(s)	137, 155, 194, 388
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	3 cut(s)	200, 377, 494
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	62, 262, 365, 467
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	193, 379, 571
StyI	CCWWGG	2 cut(s)	203, 255
TaaI	ACNGT	3 cut(s)	172, 486, 498
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	280
TasI	AATT	4 cut(s)	62, 262, 365, 467
TfiI	GAWTC	3 cut(s)	160, 275, 553
Tru1I	TTAA	3 cut(s)	399, 405, 471
Tru9I	TTAA	3 cut(s)	399, 405, 471
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	75, 212
TspGWI	ACGGA	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	398
VneI	GTGCAC	1 cut(s)	133
VpaK11BI	GGWCC	3 cut(s)	200, 377, 494
XapI	RAATTY	2 cut(s)	365, 467
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.