Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

33743673 .. 33752412

Gene Structure 8740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTTCGGGCAAAGTGGACGAAGACCTGGGCTGACGAAGACCCGGCCCTGAGAATCAAATTCACACTGAGCTCTACAATCCCCTCAGTCAGAGAAAGAGAGTTGGTGATCGGAGCAAATGGGAGGAGGCGAGCATGCGCACGGCGGAGACTTCAGGGCGAAGGTGTGGAGCATGAGCGGTGGGCCCTACTGCAGGCCCAAGCACTGGAAGCGCAACACGGCCTTCGCCATGTTCGGAGTCTTCCTCATCTGCATTCCCATCGCCATGAAATCTGCCGAGCTCGAGGTGGGCATATAGTCACAGTCAGTGAAAAGAATTGGTCTGTTTCGTTTTGGCACAATTCTGTGATCTCTGAGCTTCAGTGCGTATATGGATTCGGAGCTTGTGCTCTGAGAGAGACTCTGCGTTTTCTTGTTTCCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.17

Weight (kDa)

10.44

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	139
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccBSI	CCGCTC	1 cut(s)	178
AccII	CGCG	1 cut(s)	422
AciI	CCGC	3 cut(s)	145, 178, 420
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	137, 344
AfiI	CCNNNNNNNGG	2 cut(s)	193, 205
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	72, 281, 358, 383
AluI	AGCT	4 cut(s)	72, 281, 358, 383
Alw21I	GWGCWC	3 cut(s)	74, 283, 391
Alw26I	GTCTC	2 cut(s)	142, 392
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	4 cut(s)	45, 183, 195, 220
ApaI	GGGCCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	140, 214
AspS9I	GGNCC	4 cut(s)	46, 183, 184, 196
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	3 cut(s)	74, 187, 283
BbsI	GAAGAC	3 cut(s)	29, 45, 233
Bbv12I	GWGCWC	3 cut(s)	74, 283, 391
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	2 cut(s)	158, 235
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	142, 392
BfmI	CTRYAG	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	28, 44
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	4 cut(s)	46, 183, 184, 196
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	28, 44
BpiI	GAAGAC	3 cut(s)	29, 45, 233
BplI	GAGNNNNNCTC	4 cut(s)	229, 261, 385, 417
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 205
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	193, 205
BseMII	CTCAG	5 cut(s)	41, 59, 99, 345, 383
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	4 cut(s)	47, 185, 197, 222
BsiHKAI	GWGCWC	3 cut(s)	74, 283, 391
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	193, 205
BsmAI	GTCTC	2 cut(s)	142, 392
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	4 cut(s)	47, 185, 197, 222
BsoBI	CYCGRG	1 cut(s)	282
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	4 cut(s)	74, 187, 283, 391
Bsp143I	GATC	2 cut(s)	108, 348
BspACI	CCGC	3 cut(s)	145, 178, 420
BspANI	GGCC	4 cut(s)	47, 185, 197, 222
BspCNI	CTCAG	5 cut(s)	42, 60, 98, 346, 384
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	108, 348
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	132, 136, 195
BstDEI	CTNAG	5 cut(s)	50, 68, 85, 354, 392
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	140, 214
BstKTI	GATC	2 cut(s)	111, 351
BstMAI	GTCTC	2 cut(s)	142, 392
BstMBI	GATC	2 cut(s)	108, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	26, 42
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	422
BstV2I	GAAGAC	3 cut(s)	29, 45, 233
BsuRI	GGCC	4 cut(s)	47, 185, 197, 222
BtgZI	GCGATG	1 cut(s)	245
BtsIMutI	CAGTG	4 cut(s)	65, 203, 313, 368
Cac8I	GCNNGC	3 cut(s)	132, 136, 195
CfoI	GCGC	2 cut(s)	140, 214
Cfr13I	GGNCC	4 cut(s)	46, 183, 184, 196
CviAII	CATG	4 cut(s)	135, 173, 230, 266
CviJI	RGCY	9 cut(s)	32, 47, 72, 185, 197, 222, 281, 358, 383
CviKI_1	RGCY	9 cut(s)	32, 47, 72, 185, 197, 222, 281, 358, 383
DdeI	CTNAG	5 cut(s)	50, 68, 85, 354, 392
DpnI	GATC	2 cut(s)	110, 350
DpnII	GATC	2 cut(s)	108, 348
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	2 cut(s)	72, 281
Eco24I	GRGCYC	3 cut(s)	74, 187, 283
Eco53kI	GAGCTC	2 cut(s)	72, 281
Eco57I	CTGAAG	2 cut(s)	137, 344
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	2 cut(s)	72, 281
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	26
EcoT38I	GRGCYC	3 cut(s)	74, 187, 283
FaeI	CATG	4 cut(s)	138, 176, 233, 269
FaiI	YATR	8 cut(s)	136, 174, 231, 267, 294, 296, 370, 372
FatI	CATG	4 cut(s)	134, 172, 229, 265
FriOI	GRGCYC	3 cut(s)	74, 187, 283
FspAI	RTGCGCAY	1 cut(s)	139
FspI	TGCGCA	1 cut(s)	139
GlaI	GCGC	2 cut(s)	139, 213
HaeIII	GGCC	4 cut(s)	47, 185, 197, 222
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	2 cut(s)	140, 214
Hin1II	CATG	4 cut(s)	138, 176, 233, 269
Hin6I	GCGC	2 cut(s)	138, 212
HinP1I	GCGC	2 cut(s)	138, 212
HinfI	GANTC	4 cut(s)	54, 238, 375, 400
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	6 cut(s)	92, 113, 237, 355, 380, 393
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	155, 233
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	2 cut(s)	193, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	5 cut(s)	50, 68, 85, 354, 392
Hsp92II	CATG	4 cut(s)	138, 176, 233, 269
HspAI	GCGC	2 cut(s)	138, 212
Kzo9I	GATC	2 cut(s)	108, 348
LmnI	GCTCC	3 cut(s)	113, 169, 380
LpnPI	CCDG	7 cut(s)	13, 40, 57, 62, 140, 179, 191
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	110, 350
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	2 cut(s)	108, 348
MboII	GAAGA	3 cut(s)	34, 50, 233
MhlI	GDGCHC	4 cut(s)	74, 187, 283, 391
MluCI	AATT	3 cut(s)	59, 316, 340
MlyI	GAGTC	2 cut(s)	247, 394
MnlI	CCTC	5 cut(s)	94, 117, 120, 255, 278
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	28, 44
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	108, 348
NlaIII	CATG	4 cut(s)	138, 176, 233, 269
NlaIV	GGNNCC	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	139
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	282
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	54, 375
PflMI	CCANNNNNTGG	1 cut(s)	205
PleI	GAGTC	2 cut(s)	246, 394
PpsI	GAGTC	2 cut(s)	246, 394
Psp124BI	GAGCTC	2 cut(s)	74, 283
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	185
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	4 cut(s)	46, 183, 184, 196
PspXI	VCTCGAGB	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	2 cut(s)	74, 283
Sau3AI	GATC	2 cut(s)	108, 348
Sau96I	GGNCC	4 cut(s)	46, 183, 184, 196
SchI	GAGTC	2 cut(s)	247, 394
ScrFI	CCNGG	2 cut(s)	28, 44
SduI	GDGCHC	4 cut(s)	74, 187, 283, 391
SetI	ASST	7 cut(s)	29, 74, 166, 283, 289, 360, 385
SfcI	CTRYAG	1 cut(s)	191
Sfr274I	CTCGAG	1 cut(s)	282
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	3 cut(s)	59, 316, 340
SsiI	CCGC	3 cut(s)	145, 178, 420
SstI	GAGCTC	2 cut(s)	74, 283
StyD4I	CCNGG	2 cut(s)	26, 42
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	59, 316, 340
TfiI	GAWTC	2 cut(s)	54, 375
TscAI	CASTG	4 cut(s)	72, 210, 313, 368
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	4 cut(s)	72, 210, 313, 368
Van91I	CCANNNNNTGG	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.