Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Reverse (-)

57444563 .. 57448626

Gene Structure 4064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTAGGAAGAGAGTTTTGATAGTTGGAGGCACAGTCTATTTGGGCCAGCATGTATTGCAAGGCTTTTCAGAGATTCAAGAAACCACTTCTTGTGATCTGGCATTTACCCACCACTCAAGTCCTCCTCCCCAAGCTTTGCTCAATGCATTTCCTAGTGCGATGCCTTTCTCTGTGGATTTGAAGTATGGCAATGGATTTGAAGCCATTTCTCATCTGTTTGGTCCCGTCAGTTCCCACCCCACCATTGCCGCCCTATCCTATTCTCTCCGCCGCTGCACAATTGCCCCTCATCTCACGCCCAACACCCTTCCACCGCATGAAGAGAAAGAAGCCGGTCTATTCCAGCCTTTGAACAACCATGAGGCTACTTTCATGGAATTGCAAGGGTTTGGGTGCTTCCCTGGATCAGCCCCGAAATCCAAAATCCGTCCTCGATCTCCTTCACTAGCAAGGTTCGAGCGAGTTGAGGAGAGAGCCGAGAGTTTGCCTGTTGCGGACGAGATTTCCGGTCGCAATATTAGGCATTCCGAGAACAGTCGGGAGTTTAGACGCGTACGTGCCGTTGCCGAGGAAACCCACTTTCCTTTCCCAGAGCTGAGACGCCGCCTTGGTTCAATTTCGGAATTAAGCCACGACGAGGACGACGAGCGGAAGCTCTGGACTCTACTCCCGCCCGCTCTTAATCTCAGCACGCGGTTCAGAACCGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

239

Amino Acids

26.68

Weight (kDa)

7.2

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	652, 680
AccII	CGCG	2 cut(s)	555, 697
AclWI	GGATC	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	604
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	1 cut(s)	640
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	80, 184, 203, 355, 618
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	3 cut(s)	137, 598, 658
AluI	AGCT	3 cut(s)	137, 598, 658
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	46, 224
AvaII	GGWCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	2 cut(s)	156, 449
BisI	GCNGC	4 cut(s)	252, 274, 277, 607
BlsI	GCNGC	4 cut(s)	253, 275, 278, 608
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	46, 224
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	403, 570, 610
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse118I	RCCGGY	1 cut(s)	335
Bse3DI	GCAATG	2 cut(s)	199, 246
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	403, 570, 610
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMI	GCAATG	2 cut(s)	199, 246
BseMII	CTCAG	2 cut(s)	590, 703
BseRI	GAGGAG	2 cut(s)	117, 485
BseXI	GCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	555, 697
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	336, 510
BsiWI	CGTACG	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	1 cut(s)	595
BsmBI	CGTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	97, 407, 437
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	591, 702
BspFNI	CGCG	2 cut(s)	555, 697
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	415
BsrBI	CCGCTC	2 cut(s)	652, 680
BsrDI	GCAATG	2 cut(s)	199, 246
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	403, 570, 610
BssMI	GATC	3 cut(s)	97, 407, 437
BssNI	GRCGYC	1 cut(s)	604
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	37, 539
Bst6I	CTCTTC	2 cut(s)	5, 318
BstACI	GRCGYC	1 cut(s)	604
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	50, 678, 695
BstDEI	CTNAG	2 cut(s)	599, 689
BstFNI	CGCG	2 cut(s)	555, 697
BstKTI	GATC	3 cut(s)	100, 410, 440
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	3 cut(s)	97, 407, 437
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	2 cut(s)	555, 697
BstV1I	GCAGC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	48
BtgZI	GCGATG	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	50, 678, 695
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	46, 224
CseI	GACGC	2 cut(s)	561, 612
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	5 cut(s)	53, 320, 362, 376, 712
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	599, 689
DpnI	GATC	3 cut(s)	99, 409, 439
DpnII	GATC	3 cut(s)	97, 407, 437
Eam1104I	CTCTTC	2 cut(s)	5, 318
EarI	CTCTTC	2 cut(s)	5, 318
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	5 cut(s)	56, 323, 365, 379, 715
FaiI	YATR	6 cut(s)	54, 189, 321, 363, 377, 713
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	5 cut(s)	52, 319, 361, 375, 711
FauI	CCCGC	2 cut(s)	681, 685
Fnu4HI	GCNGC	4 cut(s)	252, 274, 277, 607
Fsp4HI	GCNGC	4 cut(s)	252, 274, 277, 607
FspBI	CTAG	2 cut(s)	156, 449
GluI	GCNGC	4 cut(s)	252, 274, 277, 607
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	336, 510
HgaI	GACGC	2 cut(s)	561, 612
Hin1I	GRCGYC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	56, 323, 365, 379, 715
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	76, 664
HpaII	CCGG	2 cut(s)	336, 510
Hpy188I	TCNGA	4 cut(s)	73, 532, 625, 704
Hpy188III	TCNNGA	3 cut(s)	80, 542, 661
Hpy99I	CGWCG	2 cut(s)	641, 650
HpyAV	CCTTC	2 cut(s)	320, 453
HpyCH4III	ACNGT	2 cut(s)	37, 539
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	4 cut(s)	61, 149, 279, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	599, 689
HpySE526I	ACGT	1 cut(s)	559
Hsp92I	GRCGYC	1 cut(s)	604
Hsp92II	CATG	5 cut(s)	56, 323, 365, 379, 715
Kzo9I	GATC	3 cut(s)	97, 407, 437
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	156, 449
MaeII	ACGT	1 cut(s)	559
MalI	GATC	3 cut(s)	99, 409, 439
MbiI	CCGCTC	2 cut(s)	652, 680
MboI	GATC	3 cut(s)	97, 407, 437
MboII	GAAGA	2 cut(s)	22, 335
MfeI	CAATTG	1 cut(s)	282
MluCI	AATT	4 cut(s)	282, 380, 618, 626
MluI	ACGCGT	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	9 cut(s)	23, 135, 138, 300, 358, 444, 463, 565, 634
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	2 cut(s)	629, 684
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	2 cut(s)	336, 510
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	555, 697
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	3 cut(s)	97, 407, 437
NlaIII	CATG	5 cut(s)	56, 323, 365, 379, 715
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	2 cut(s)	505, 595
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	642, 645
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	76
Pfl23II	CGTACG	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	253, 275, 278, 608
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
Ppu21I	YACGTR	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspLI	CGTACG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	46, 224
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	2 cut(s)	629, 684
SatI	GCNGC	4 cut(s)	252, 274, 277, 607
Sau3AI	GATC	3 cut(s)	97, 407, 437
Sau96I	GGNCC	2 cut(s)	46, 224
SchI	GAGTC	1 cut(s)	658
ScrFI	CCNGG	1 cut(s)	405
SetI	ASST	5 cut(s)	139, 458, 562, 600, 660
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	4 cut(s)	282, 380, 618, 626
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	156, 449
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	37, 539
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	2 cut(s)	436, 459
TasI	AATT	4 cut(s)	282, 380, 618, 626
TauI	GCSGC	3 cut(s)	254, 276, 609
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	629, 684
Tru9I	TTAA	2 cut(s)	629, 684
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	2 cut(s)	336, 364
TspGWI	ACGGA	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	2 cut(s)	156, 449
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.