Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

13788350 .. 13791318

Gene Structure 2969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12450.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACGAGTAAGAAGAGAGTTCTGGTAGTTGGGGGAACAGGTTACTTGGGCCAGCATCTACTGCAAGGGTTCTCCCAGATTGAAGGGAAAGGGATCACATCAACCACCCCTTTCGATCTGGCCTTTACCCACCACTCCAATCCTCCTCCCCAGGTGTTGCTCGACGCATTTCCACATTTGCTGCCTTTCCAAGTCGATTTGAAGACCGGCCATGGATTTCAAACCATTTCTCAGACGTTTGGCCGGCCTGATGTGGTCATAAACTGCGCTGCACTATCTATACCCCGTGCCTGTGAAATGGATCCTGCTGCTGCTTTGTCTGTGAATGTTCCATCTTCTCTTGTGAACTGGTTATCAAGCTTTGAAGAGAGTAGTTCTCTTCTGATCCACTTGTCAACTGATCAAGTTTATGAAGGGGTGAAGTCCTTTTACAAGGAAGATGATGAAACTGCTCCTGTAAATGTATATGGGAAATCAAAAGTGGCAGCAGAGCAGTTCATATCTGAAAAATGCTCAAACTTTGCAATTTTGAGAAGCAGCATCATCTTTGGGCCACAGACAATCTCACCGGTTCCAAAATCTCTTCCAATCCAGTGGATAGATGGTGTCCTCTCCAAAGGAAAGATGAGCGAGTTTTTCCATGACGAGTTCCGGTGTCCTGTGTATGTAAAAGATGTTGTAGCTGTCATATTAGCTTTGTCCAAGAGATGGATATATGAAAGTAAGCAAACAAAGGTGCTACTAAATGTCGGTGGACCAGATAGGGTATCCCGCCTTCAAATGGCTGAGATTGTTGCCGATGTTAGAGGATACAACCCCTCATTAATCAAATCAGTGTCTGCATCATCAGTCGATCGTGGAGTAATGTCTCCTGCGGACATATCCATGGATATTACCAAGCTGGTTCGGACACTTGGTATTGCTCCAACTTCATTTAGAGACGGTGTCAGATTGACGCTTGAAACTGAGGCTAAGTCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

328

Amino Acids

35.69

Weight (kDa)

7.05

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	708
AciI	CCGC	2 cut(s)	772, 875
AclWI	GGATC	4 cut(s)	101, 296, 309, 379
AcoI	YGGCCR	2 cut(s)	208, 241
AfiI	CCNNNNNNNGG	2 cut(s)	708, 781
AgeI	ACCGGT	1 cut(s)	568
AgsI	TTSAA	6 cut(s)	83, 202, 221, 365, 779, 962
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	360, 683, 695, 901
AluI	AGCT	4 cut(s)	360, 683, 695, 901
Alw26I	GTCTC	2 cut(s)	873, 933
AlwI	GGATC	4 cut(s)	101, 296, 309, 379
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	6 cut(s)	49, 120, 208, 241, 245, 551
ApeKI	GCWGC	6 cut(s)	181, 269, 308, 311, 485, 537
AseI	ATTAAT	1 cut(s)	824
AsiGI	ACCGGT	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	49, 551, 755
AsuHPI	GGTGA	2 cut(s)	430, 558
AvaII	GGWCC	1 cut(s)	755
BamHI	GGATCC	1 cut(s)	301
BarI	GAAGNNNNNNTAC	4 cut(s)	413, 445, 759, 791
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	6 cut(s)	168, 256, 295, 298, 497, 549
BccI	CCATC	3 cut(s)	340, 596, 702
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	2 cut(s)	778, 803
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	873, 933
BfuI	GTATCC	2 cut(s)	778, 803
BisI	GCNGC	6 cut(s)	182, 270, 309, 312, 486, 538
BlsI	GCNGC	6 cut(s)	183, 271, 310, 313, 487, 539
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	3 cut(s)	49, 551, 755
BmiI	GGNNCC	2 cut(s)	303, 573
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	3 cut(s)	64, 549, 851
BpiI	GAAGAC	1 cut(s)	209
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BsaJI	CCNNGG	3 cut(s)	150, 211, 885
BsaWI	WCCGGW	2 cut(s)	568, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	708, 781
Bse118I	RCCGGY	3 cut(s)	206, 243, 568
Bse1I	ACTGG	2 cut(s)	353, 592
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	150, 211, 885
BseLI	CCNNNNNNNGG	2 cut(s)	708, 781
BseMII	CTCAG	3 cut(s)	245, 777, 957
BseNI	ACTGG	2 cut(s)	353, 592
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	6 cut(s)	168, 256, 295, 298, 497, 549
BsgI	GTGCAG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	6 cut(s)	51, 122, 210, 243, 247, 553
BshTI	ACCGGT	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	856
BsiSI	CCGG	4 cut(s)	207, 244, 569, 652
BslI	CCNNNNNNNGG	2 cut(s)	708, 781
BsmAI	GTCTC	2 cut(s)	873, 933
BsmBI	CGTCTC	1 cut(s)	933
BsnI	GGCC	6 cut(s)	51, 122, 210, 243, 247, 553
Bsp143I	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
Bsp19I	CCATGG	2 cut(s)	211, 885
BspACI	CCGC	2 cut(s)	772, 875
BspANI	GGCC	6 cut(s)	51, 122, 210, 243, 247, 553
BspCNI	CTCAG	3 cut(s)	244, 778, 958
BspLI	GGNNCC	2 cut(s)	303, 573
BspPI	GGATC	4 cut(s)	101, 296, 309, 379
BsrFI	RCCGGY	3 cut(s)	206, 243, 568
BsrI	ACTGG	2 cut(s)	353, 592
BssAI	RCCGGY	3 cut(s)	206, 243, 568
BssECI	CCNNGG	3 cut(s)	150, 211, 885
BssMI	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
BssT1I	CCWWGG	2 cut(s)	211, 885
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	944
Bst6I	CTCTTC	4 cut(s)	8, 360, 384, 588
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	53, 245
BstDEI	CTNAG	4 cut(s)	231, 786, 966, 972
BstDSI	CCRYGG	2 cut(s)	211, 885
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	6 cut(s)	96, 118, 304, 387, 403, 856
BstMAI	GTCTC	2 cut(s)	873, 933
BstMBI	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	6 cut(s)	168, 256, 295, 298, 497, 549
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	594
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	2 cut(s)	778, 803
BsuRI	GGCC	6 cut(s)	51, 122, 210, 243, 247, 553
BtgI	CCRYGG	2 cut(s)	211, 885
BtsIMutI	CAGTG	2 cut(s)	599, 840
Cac8I	GCNNGC	2 cut(s)	53, 245
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	3 cut(s)	206, 243, 568
Cfr13I	GGNCC	3 cut(s)	49, 551, 755
CseI	GACGC	2 cut(s)	173, 964
CspAI	ACCGGT	1 cut(s)	568
CviAII	CATG	3 cut(s)	212, 641, 886
DdeI	CTNAG	4 cut(s)	231, 786, 966, 972
DpnI	GATC	6 cut(s)	95, 117, 303, 386, 402, 855
DpnII	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
EaeI	YGGCCR	2 cut(s)	208, 241
Eam1104I	CTCTTC	4 cut(s)	8, 360, 384, 588
EarI	CTCTTC	4 cut(s)	8, 360, 384, 588
Eco130I	CCWWGG	2 cut(s)	211, 885
Eco47I	GGWCC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	211, 885
ErhI	CCWWGG	2 cut(s)	211, 885
Esp3I	CGTCTC	1 cut(s)	933
FaeI	CATG	3 cut(s)	215, 644, 889
FatI	CATG	3 cut(s)	211, 640, 885
FauI	CCCGC	1 cut(s)	779
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	6 cut(s)	182, 270, 309, 312, 486, 538
FseI	GGCCGGCC	1 cut(s)	247
Fsp4HI	GCNGC	6 cut(s)	182, 270, 309, 312, 486, 538
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	6 cut(s)	182, 270, 309, 312, 486, 538
HaeIII	GGCC	6 cut(s)	51, 122, 210, 243, 247, 553
HapII	CCGG	4 cut(s)	207, 244, 569, 652
HgaI	GACGC	2 cut(s)	173, 964
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	215, 644, 889
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	358
HpaII	CCGG	4 cut(s)	207, 244, 569, 652
HphI	GGTGA	2 cut(s)	430, 558
Hpy166II	GTNNAC	3 cut(s)	346, 396, 755
Hpy188I	TCNGA	5 cut(s)	234, 384, 505, 909, 950
Hpy188III	TCNNGA	1 cut(s)	981
Hpy8I	GTNNAC	3 cut(s)	346, 396, 755
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	77, 407, 785
HpyCH4III	ACNGT	1 cut(s)	944
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	64, 272, 524, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	4 cut(s)	231, 786, 966, 972
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	215, 644, 889
HspAI	GCGC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
LmnI	GCTCC	2 cut(s)	457, 928
Lsp1109I	GCAGC	6 cut(s)	168, 256, 295, 298, 497, 549
LweI	GCATC	3 cut(s)	64, 549, 851
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	6 cut(s)	95, 117, 303, 386, 402, 855
MboI	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
MboII	GAAGA	7 cut(s)	25, 214, 327, 371, 377, 449, 575
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	950
MnlI	CCTC	6 cut(s)	153, 156, 620, 800, 829, 961
MroNI	GCCGGC	1 cut(s)	243
MseI	TTAA	1 cut(s)	824
MslI	CAYNNNNRTG	1 cut(s)	884
MspI	CCGG	4 cut(s)	207, 244, 569, 652
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	61
NaeI	GCCGGC	1 cut(s)	245
NcoI	CCATGG	2 cut(s)	211, 885
NdeII	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	3 cut(s)	215, 644, 889
NlaIV	GGNNCC	2 cut(s)	303, 573
PdiI	GCCGGC	1 cut(s)	245
PflFI	GACNNNGTC	1 cut(s)	944
PflMI	CCANNNNNTGG	1 cut(s)	708
PinAI	ACCGGT	1 cut(s)	568
PkrI	GCNGC	6 cut(s)	183, 271, 310, 313, 487, 539
Ple19I	CGATCG	1 cut(s)	856
PshBI	ATTAAT	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	303, 573
PspPI	GGNCC	3 cut(s)	49, 551, 755
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	944
PvuI	CGATCG	1 cut(s)	856
RigI	GGCCGGCC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	884
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	6 cut(s)	182, 270, 309, 312, 486, 538
Sau3AI	GATC	6 cut(s)	93, 115, 301, 384, 400, 853
Sau96I	GGNCC	3 cut(s)	49, 551, 755
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	8 cut(s)	43, 156, 239, 362, 685, 697, 738, 903
SfaNI	GCATC	3 cut(s)	64, 549, 851
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	884
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	2 cut(s)	772, 875
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	211, 885
TaaI	ACNGT	1 cut(s)	944
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	4 cut(s)	114, 162, 195, 852
TasI	AATT	1 cut(s)	525
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	2 cut(s)	599, 840
TseI	GCWGC	6 cut(s)	181, 269, 308, 311, 485, 537
TspDTI	ATGAA	5 cut(s)	426, 459, 487, 732, 921
TspRI	CASTG	2 cut(s)	599, 840
Tth111I	GACNNNGTC	1 cut(s)	944
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	755
VspI	ATTAAT	1 cut(s)	824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.