Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Forward (+)

45876315 .. 45878470

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCTAAAACAATCAAGCAAGCAACTTTTAAGTGCTGAGAGGTGTATTCAGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCGGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCAGCTATGTCAGTTAATGTGCCATCTTCTCTTGTTAATTGGTTATCGAGCTTAGAAGAGAGTAATTATCTTCTGATCCATTTGTCAACTGATCAAGTTTATGAAGGGGTGAAGTCTTTTTACAAGGAAGATGATGAAGTTGTTCCAGTAAATGTTTATGGGAAATCAAAAGTGGCAGCTGAGCAGTTCATTACTGAGAAATGCTCAAACTTTGCAATTTTGAGAAGCAGTATCATCTTTGGGCCACAGACAATCTCACCGGTTTCAAAATCTCTTCCGATTCAGTGGGTTGATGGTGTCCTCTCCAAAGGGAATACGATGGAATTCTTTCATGATGAGTTTCGATGCCCTGTGTATGTAAAGGATGTAGTAGCAATCATACTTGCTTTGTCCAAGACATGGATATCAGATGCTAAGCAAAGAAAATTGCTACTGAATGTTGGTGGACCGGACAGGGTATCCCATGTACAAATGGCTGAGACGGTTGCTGATATAAGGGGATACAACCTGTTATTAATTAAATCTGTATCTGCATCATCGGTTGATCGTGGAGTTATGTCTCCTGCTGACATATCCATGGATATAACTAAGCTAGTTCAGACGCTTGGTATTTCTCCTATTTCATTTCGAGATGGTGTCAGATTGACGCTTGAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

257

Amino Acids

28.23

Weight (kDa)

5.69

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	13 - 255	5.7e-37	RmlD substrate binding domain
Epimerase	PF01370	15 - 171	4.2e-14	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	15 - 111	1.2e-07	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	513
AclWI	GGATC	3 cut(s)	101, 114, 184
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	381, 767
AluBI	AGCT	4 cut(s)	119, 165, 293, 706
AluI	AGCT	4 cut(s)	119, 165, 293, 706
Alw26I	GTCTC	2 cut(s)	587, 678
AlwI	GGATC	3 cut(s)	101, 114, 184
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	74, 113, 116, 290
ApoI	RAATTY	1 cut(s)	437
AseI	ATTAAT	1 cut(s)	629
AsiGI	ACCGGT	1 cut(s)	373
Asp700I	GAANNNNTTC	2 cut(s)	255, 441
AspS9I	GGNCC	2 cut(s)	356, 560
AsuHPI	GGTGA	2 cut(s)	235, 363
AvaII	GGWCC	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	106
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BauI	CACGAG	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	61, 100, 128, 302
BccI	CCATC	4 cut(s)	145, 401, 427, 740
BciVI	GTATCC	2 cut(s)	583, 608
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	587, 678
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	2 cut(s)	583, 608
BisI	GCNGC	4 cut(s)	75, 114, 117, 291
BlpI	GCTNAGC	2 cut(s)	294, 528
BlsI	GCNGC	4 cut(s)	76, 115, 118, 292
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	356, 560
BmiI	GGNNCC	2 cut(s)	87, 108
BmsI	GCATC	3 cut(s)	449, 514, 656
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu1102I	GCTNAGC	2 cut(s)	294, 528
BsaJI	CCNNGG	1 cut(s)	690
BsaWI	WCCGGW	2 cut(s)	373, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	4 cut(s)	27, 285, 300, 582
BseNI	ACTGG	1 cut(s)	260
BseXI	GCAGC	4 cut(s)	61, 100, 128, 302
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	358
BshTI	ACCGGT	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	374, 563
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	587, 678
BsmBI	CGTCTC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	106, 189, 205, 658
Bsp1720I	GCTNAGC	2 cut(s)	294, 528
Bsp19I	CCATGG	1 cut(s)	690
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	4 cut(s)	28, 286, 301, 583
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	87, 108
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	3 cut(s)	101, 114, 184
BsrFI	RCCGGY	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	4 cut(s)	106, 189, 205, 658
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	690
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	71, 598, 771
Bst6I	CTCTTC	2 cut(s)	165, 393
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	7 cut(s)	36, 166, 294, 309, 528, 591, 702
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	4 cut(s)	109, 192, 208, 661
BstMAI	GTCTC	2 cut(s)	587, 678
BstMBI	GATC	4 cut(s)	106, 189, 205, 658
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	61, 100, 128, 302
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuI	GTATCC	2 cut(s)	583, 608
BsuRI	GGCC	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	356, 560
CseI	GACGC	2 cut(s)	724, 769
Csp6I	GTAC	1 cut(s)	581
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	4 cut(s)	446, 513, 578, 691
CviJI	RGCY	7 cut(s)	52, 119, 165, 293, 358, 590, 706
CviKI_1	RGCY	7 cut(s)	52, 119, 165, 293, 358, 590, 706
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	7 cut(s)	36, 166, 294, 309, 528, 591, 702
DpnI	GATC	4 cut(s)	108, 191, 207, 660
DpnII	GATC	4 cut(s)	106, 189, 205, 658
Eam1104I	CTCTTC	2 cut(s)	165, 393
EarI	CTCTTC	2 cut(s)	165, 393
Eco130I	CCWWGG	1 cut(s)	690
Eco32I	GATATC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	4 cut(s)	449, 516, 581, 694
FatI	CATG	4 cut(s)	445, 512, 577, 690
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	75, 114, 117, 291
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	4 cut(s)	75, 114, 117, 291
FspBI	CTAG	1 cut(s)	707
GluI	GCNGC	4 cut(s)	75, 114, 117, 291
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	2 cut(s)	374, 563
HgaI	GACGC	2 cut(s)	724, 769
Hin1II	CATG	4 cut(s)	449, 516, 581, 694
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	374, 563
HphI	GGTGA	2 cut(s)	235, 363
Hpy166II	GTNNAC	3 cut(s)	67, 201, 560
Hpy188I	TCNGA	5 cut(s)	189, 393, 523, 714, 755
Hpy188III	TCNNGA	2 cut(s)	446, 743
Hpy8I	GTNNAC	3 cut(s)	67, 201, 560
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	71, 598, 771
HpyCH4V	TGCA	4 cut(s)	77, 116, 329, 647
HpyF3I	CTNAG	7 cut(s)	36, 166, 294, 309, 528, 591, 702
Hsp92II	CATG	4 cut(s)	449, 516, 581, 694
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	106, 189, 205, 658
Lsp1109I	GCAGC	4 cut(s)	61, 100, 128, 302
LweI	GCATC	3 cut(s)	449, 514, 656
MaeI	CTAG	1 cut(s)	707
MalI	GATC	4 cut(s)	108, 191, 207, 660
MboI	GATC	4 cut(s)	106, 189, 205, 658
MboII	GAAGA	5 cut(s)	132, 176, 182, 254, 380
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	6 cut(s)	151, 178, 330, 437, 539, 630
MnlI	CCTC	3 cut(s)	33, 99, 425
MroXI	GAANNNNTTC	2 cut(s)	255, 441
MseI	TTAA	5 cut(s)	29, 129, 150, 629, 633
MslI	CAYNNNNRTG	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	374, 563
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	4 cut(s)	106, 189, 205, 658
NlaIII	CATG	4 cut(s)	449, 516, 581, 694
NlaIV	GGNNCC	2 cut(s)	87, 108
PacI	TTAATTAA	1 cut(s)	633
PagI	TCATGA	1 cut(s)	445
PdmI	GAANNNNTTC	2 cut(s)	255, 441
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	513
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	76, 115, 118, 292
PshBI	ATTAAT	1 cut(s)	629
PspN4I	GGNNCC	2 cut(s)	87, 108
PspPI	GGNCC	2 cut(s)	356, 560
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	29, 129, 150, 629, 633
SatI	GCNGC	4 cut(s)	75, 114, 117, 291
Sau3AI	GATC	4 cut(s)	106, 189, 205, 658
Sau96I	GGNCC	2 cut(s)	356, 560
SetI	ASST	6 cut(s)	44, 121, 167, 295, 624, 708
SfaNI	GCATC	3 cut(s)	449, 514, 656
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	689
Sse9I	AATT	6 cut(s)	151, 178, 330, 437, 539, 630
SspMI	CTAG	1 cut(s)	707
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	3 cut(s)	71, 598, 771
TaqI	TCGA	3 cut(s)	161, 457, 742
TasI	AATT	6 cut(s)	151, 178, 330, 437, 539, 630
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	5 cut(s)	29, 129, 150, 629, 633
Tru9I	TTAA	5 cut(s)	29, 129, 150, 629, 633
TscAI	CASTG	1 cut(s)	404
TseI	GCWGC	4 cut(s)	74, 113, 116, 290
TspDTI	ATGAA	5 cut(s)	231, 264, 292, 434, 726
TspRI	CASTG	1 cut(s)	404
Van91I	CCANNNNNTGG	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	560
VspI	ATTAAT	1 cut(s)	629
XapI	RAATTY	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	255, 441
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.