Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Reverse (-)

22363188 .. 22365956

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGTAGGAAGAGAGTTTTGATAGTTGGAGGCACAGGTTACTTGGGACAGCATGTATTGCAAGGCTTTGCAGAGATTCAAGAAACCACTCCTTGTGATCTGGCATTTACCCACCACTCAAGTCCTCCTCCCCAAGCTTTGCTCAATGCATTTCCTAGCGTGATGCCTTTCTCTGTGGATTTGAAGTCTGGCAATGGATTTGAAGCCATTTCTCATCAGTTTGGTCCGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCGGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCAGCTATGTCAGTTAACGTGCCATCTTCTCTTGTTAATTGTTCAGGGGTGAAGTCCTTTTACAAGGAAGATGATGAAGTTGTTCCAGTAAATGTTTATGGGAAATCAAAAGTGGCAGCTGAGCAGTTCATTACTGAGAAATGCTCAAACTTTGCAATTTTGAGAAGTAGTATCATCTTTGGGCCACAGACAATCTCACCGGTTTCAAAATCTCTTCCGATTCAGTGGGTTGATGGTGTCCTCTCCAAAGGAAATACAACGGAATTCTTTCATGATGAGTTTCGATGCCCTGTGTATGTAAAGGATGTCGTAGCAATCATACTTGCTTTCTCCAAGACATGGATATCAGAGGCTAAGCAAAGAAAATTGCTACTGAATGTTGGCGGACCGGACAGGATATCCCGTGTACAAATGGCTGAGATGGTTGCTGATATAAGGGGATACAACCTCTCATTAATTAAATCTGTATCTGCATCACCGTTGCATTCTGACTTGTTTTCACTTTGCCCTTGTCTGGACGGGGGTGGTAGCGATGGTGTGGTTGTTCGAATAAGGATTAGGATTAGGATAGTATCTCTGTACCTGACAATATTTCACTATCATGTTTATCTTCTGGTTGATCATGGAGTAATGTCTCCTGCTGACATATCCATGGATATAACTAAGCTAGTTCAGACGCTTGGTATTTCTCCTATTTCATTTCGAGATGGTGTCAGATTGACGCTTGAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

341

Amino Acids

37.16

Weight (kDa)

6.75

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	5 - 106	1.1e-06	RmlD substrate binding domain
Epimerase	PF01370	6 - 105	3.5e-06	NAD dependent epimerase/dehydratase family
RmlD_sub_bind	PF04321	115 - 254	2.8e-16	RmlD substrate binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	630
AciI	CCGC	2 cut(s)	227, 675
AclWI	GGATC	2 cut(s)	278, 291
AcsI	RAATTY	1 cut(s)	554
AfaI	GTAC	2 cut(s)	699, 872
AfiI	CCNNNNNNNGG	2 cut(s)	630, 805
AgeI	ACCGGT	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	80, 184, 203, 498, 1019
AluBI	AGCT	4 cut(s)	137, 296, 410, 958
AluI	AGCT	4 cut(s)	137, 296, 410, 958
Alw26I	GTCTC	1 cut(s)	930
AlwI	GGATC	2 cut(s)	278, 291
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	251, 290, 293, 407
ApoI	RAATTY	1 cut(s)	554
AseI	ATTAAT	1 cut(s)	746
AsiGI	ACCGGT	1 cut(s)	490
Asp700I	GAANNNNTTC	2 cut(s)	372, 558
AspS9I	GGNCC	3 cut(s)	224, 473, 677
AsuHPI	GGTGA	3 cut(s)	352, 480, 759
AsuII	TTCGAA	1 cut(s)	838
AvaII	GGWCC	2 cut(s)	224, 677
BamHI	GGATCC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	238, 277, 305, 419
BccI	CCATC	5 cut(s)	322, 518, 706, 818, 992
BciVI	GTATCC	1 cut(s)	725
BclI	TGATCA	1 cut(s)	910
BcoDI	GTCTC	1 cut(s)	930
BfaI	CTAG	2 cut(s)	156, 959
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	4 cut(s)	252, 291, 294, 408
BlpI	GCTNAGC	2 cut(s)	411, 645
BlsI	GCNGC	4 cut(s)	253, 292, 295, 409
Bme18I	GGWCC	2 cut(s)	224, 677
BmgT120I	GGNCC	3 cut(s)	224, 473, 677
BmiI	GGNNCC	2 cut(s)	264, 285
BmsI	GCATC	3 cut(s)	153, 566, 773
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
Bpu1102I	GCTNAGC	2 cut(s)	411, 645
Bpu14I	TTCGAA	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	942
BsaWI	WCCGGW	2 cut(s)	490, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	630, 805
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	942
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	630, 805
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	3 cut(s)	402, 417, 699
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	238, 277, 305, 419
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	475
BshTI	ACCGGT	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	491, 680
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	630, 805
BsmAI	GTCTC	1 cut(s)	930
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	1 cut(s)	475
Bsp119I	TTCGAA	1 cut(s)	838
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	97, 283, 910
Bsp1720I	GCTNAGC	2 cut(s)	411, 645
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	2 cut(s)	227, 675
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	3 cut(s)	403, 418, 700
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	264, 285
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	2 cut(s)	278, 291
BspT104I	TTCGAA	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	942
BssMI	GATC	3 cut(s)	97, 283, 910
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	942
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	248, 771, 1023
Bst6I	CTCTTC	2 cut(s)	5, 510
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	697
BstBI	TTCGAA	1 cut(s)	838
BstDEI	CTNAG	5 cut(s)	411, 426, 645, 708, 954
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	3 cut(s)	100, 286, 913
BstMAI	GTCTC	1 cut(s)	930
BstMBI	GATC	3 cut(s)	97, 283, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	238, 277, 305, 419
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	942
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	224, 473, 677
CpoI	CGGWCCG	1 cut(s)	677
CseI	GACGC	2 cut(s)	976, 1021
Csp6I	GTAC	2 cut(s)	698, 871
CspAI	ACCGGT	1 cut(s)	490
CspI	CGGWCCG	1 cut(s)	677
CviAII	CATG	6 cut(s)	53, 563, 630, 893, 914, 943
CviJI	RGCY	9 cut(s)	66, 137, 206, 296, 410, 475, 644, 707, 958
CviKI_1	RGCY	9 cut(s)	66, 137, 206, 296, 410, 475, 644, 707, 958
CviQI	GTAC	2 cut(s)	698, 871
DdeI	CTNAG	5 cut(s)	411, 426, 645, 708, 954
DpnI	GATC	3 cut(s)	99, 285, 912
DpnII	GATC	3 cut(s)	97, 283, 910
Eam1104I	CTCTTC	2 cut(s)	5, 510
EarI	CTCTTC	2 cut(s)	5, 510
EciI	GGCGGA	2 cut(s)	216, 690
Eco130I	CCWWGG	1 cut(s)	942
Eco32I	GATATC	2 cut(s)	636, 690
Eco47I	GGWCC	2 cut(s)	224, 677
EcoRI	GAATTC	1 cut(s)	554
EcoRV	GATATC	2 cut(s)	636, 690
EcoT14I	CCWWGG	1 cut(s)	942
EcoT22I	ATGCAT	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	942
FaeI	CATG	6 cut(s)	56, 566, 633, 896, 917, 946
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	6 cut(s)	52, 562, 629, 892, 913, 942
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	252, 291, 294, 408
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	4 cut(s)	252, 291, 294, 408
FspBI	CTAG	2 cut(s)	156, 959
GluI	GCNGC	4 cut(s)	252, 291, 294, 408
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	2 cut(s)	491, 680
HgaI	GACGC	2 cut(s)	976, 1021
Hin1II	CATG	6 cut(s)	56, 566, 633, 896, 917, 946
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	76, 511
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	491, 680
HphI	GGTGA	3 cut(s)	352, 480, 759
Hpy166II	GTNNAC	3 cut(s)	244, 307, 698
Hpy188I	TCNGA	5 cut(s)	510, 640, 781, 966, 1007
Hpy188III	TCNNGA	4 cut(s)	80, 563, 806, 995
Hpy8I	GTNNAC	3 cut(s)	244, 307, 698
HpyCH4III	ACNGT	3 cut(s)	248, 771, 1023
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	8 cut(s)	61, 71, 149, 254, 293, 446, 764, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	5 cut(s)	411, 426, 645, 708, 954
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	6 cut(s)	56, 566, 633, 896, 917, 946
Ksp22I	TGATCA	1 cut(s)	910
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	97, 283, 910
Lsp1109I	GCAGC	4 cut(s)	238, 277, 305, 419
LweI	GCATC	3 cut(s)	153, 566, 773
MaeI	CTAG	2 cut(s)	156, 959
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	99, 285, 912
MboI	GATC	3 cut(s)	97, 283, 910
MboII	GAAGA	5 cut(s)	22, 309, 371, 497, 893
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	5 cut(s)	328, 447, 554, 656, 747
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	23, 135, 138, 276, 542, 634, 749
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	2 cut(s)	372, 558
MseI	TTAA	4 cut(s)	306, 327, 746, 750
MslI	CAYNNNNRTG	2 cut(s)	891, 941
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	491, 680
Mva1269I	GAATGC	1 cut(s)	775
MwoI	GCNNNNNNNGC	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	942
NdeII	GATC	3 cut(s)	97, 283, 910
NlaIII	CATG	6 cut(s)	56, 566, 633, 896, 917, 946
NlaIV	GGNNCC	2 cut(s)	264, 285
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	56
NspV	TTCGAA	1 cut(s)	838
PacI	TTAATTAA	1 cut(s)	750
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	775
PdmI	GAANNNNTTC	2 cut(s)	372, 558
PfeI	GAWTC	2 cut(s)	76, 511
PflMI	CCANNNNNTGG	1 cut(s)	630
PinAI	ACCGGT	1 cut(s)	490
PkrI	GCNGC	4 cut(s)	253, 292, 295, 409
PshBI	ATTAAT	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	264, 285
PspPI	GGNCC	3 cut(s)	224, 473, 677
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	699, 872
RsaNI	GTAC	2 cut(s)	698, 871
RseI	CAYNNNNRTG	2 cut(s)	891, 941
Rsr2I	CGGWCCG	1 cut(s)	677
RsrII	CGGWCCG	1 cut(s)	677
SaqAI	TTAA	4 cut(s)	306, 327, 746, 750
SatI	GCNGC	4 cut(s)	252, 291, 294, 408
Sau3AI	GATC	3 cut(s)	97, 283, 910
Sau96I	GGNCC	3 cut(s)	224, 473, 677
SetI	ASST	8 cut(s)	40, 139, 298, 312, 412, 741, 876, 960
SfaNI	GCATC	3 cut(s)	153, 566, 773
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	838
SinI	GGWCC	2 cut(s)	224, 677
SmiMI	CAYNNNNRTG	2 cut(s)	891, 941
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	5 cut(s)	328, 447, 554, 656, 747
SsiI	CCGC	2 cut(s)	227, 675
SspI	AATATT	1 cut(s)	882
SspMI	CTAG	2 cut(s)	156, 959
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	3 cut(s)	248, 771, 1023
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	574, 838, 994
TasI	AATT	5 cut(s)	328, 447, 554, 656, 747
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	2 cut(s)	76, 511
Tru1I	TTAA	4 cut(s)	306, 327, 746, 750
Tru9I	TTAA	4 cut(s)	306, 327, 746, 750
TscAI	CASTG	1 cut(s)	521
TseI	GCWGC	4 cut(s)	251, 290, 293, 407
TspDTI	ATGAA	4 cut(s)	381, 409, 551, 978
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	2 cut(s)	224, 677
VspI	ATTAAT	1 cut(s)	746
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	372, 558
XspI	CTAG	2 cut(s)	156, 959
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.