Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001020

Physical Location & Seq

Genomic Coordinates Reverse (-)

21030415 .. 21032970

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCCTTTTTCTGTGGATTTGAAGTCTGGCAGTGGATTTGAAGCCATTTCTCATCAGTTTGGTCCGCCTGATGTGGTAGTAAACTGTGCTGCACTTTCGGTTCCTCGTGCCTGTGAAATGGATCCTGCTGCAGCTATGTCAGTTAATGTGCCATCTTCTCTTGTTAATTGGTTATCGAGCTTAGAAGAGAGTAATTATCTTCTGATCCATTTGTCAACTGATCAAGTTTATGAAGGGGTGAAGTCTTTTTACAAGGAAGATGATGAAGTTGTTCCAGTAAATGTTTATGGGAAATCAAAAGTGGCAGCTGAGCAGTTCATTACTGAGAAATGCTCAAACTTTGCAATTTTGAGAAGCAGTATCATCTTTGGGCCACAGACAATCTCACCGGTTTCAAAATCTCTTCCGATTCAGTGGGTTGATGGTGTCCTCTCCAAAGGGAATACAACGGAATTCTTTCATGATGAGTTTCGATGCCCTGTGTATGTAAAGGATGTCGTAGTAATCATACTCGCTTTGTCCAAGACATGGATATCAGAGGCTAAGCAAATAAAATTGCTACTGAATGTTGGTGGACCTGACAGGGTATCCCGTGTACAAATGGCTGAGACAGTTGCTGATATAAGGGGATACAACCTCTCATTAATTAAATCTGTATCTGCATCATCGGTTGATCGTGGAGTTATGTCTCCAGCTGACATATCCATGGATATAACTAAGCTAGTTCAGACGCTTGGTATTTCTCGTATTTCATTTCGAGTTGGTGTCAGATTGACGCTTGAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RmlD_sub_bind

Protein Analysis

263

Amino Acids

28.61

Weight (kDa)

5.47

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	5 - 175	6.5e-14	NAD dependent epimerase/dehydratase family
RmlD_sub_bind	PF04321	14 - 260	1.5e-35	RmlD substrate binding domain
GDP_Man_Dehyd	PF16363	22 - 113	1.5e-06	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00560 AT4G00560 AT4G00560 AT4G00560
fragaria_vesca	FvH4_7g13560
malus_domestica	MD01G1052100.v1.1 MD07G1128800.v1.1
prunus_persica	Prupe.2G159800_v2.0.a1 Prupe.2G159800_v2.0.a1
pyrus_communis	pycom01g07780 pycom07g12450
rosa_chinensis	RchiOBHm_Chr0c39g0503211 RchiOBHm_Chr0c39g0503281 RchiOBHm_Chr0c39g0503291 RchiOBHm_Chr0c39g0503341 RchiOBHm_Chr1g0353111 RchiOBHm_Chr1g0353131 RchiOBHm_Chr1g0353141 RchiOBHm_Chr1g0353211 RchiOBHm_Chr1g0353241 RchiOBHm_Chr1g0353261 RchiOBHm_Chr1g0353281 RchiOBHm_Chr1g0353321 RchiOBHm_Chr1g0353331
rosa_laevigata	RLG00000009762 RLG00000028278 RLG00000028280 RLG00000028284 RLG00000028286 RLG00000028288
rosa_multiflora	Rmu_sc0001207.1_g000042 Rmu_sc0001207.1_g000081 Rmu_sc0011028.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301960 Rroxscaffold_4G00301980 Rroxscaffold_4G00302000 Rroxscaffold_4G00302020 Rroxscaffold_4G00302040
rosa_rugosa	Rorug01G0233600 Rorug01G0233700 Rorug01G0233800 Rorug01G0234000 Rorug01G0234100 Rorug01G0234100 Rorug01G0234300 Rorug01G0235000
rosa_samantha	Rh1AG247600 Rh1BG020800 Rh1BG217400 Rh1BG217500 Rh1CG231100 Rh1DG243500 Rh1DG243800 Rh7CG311900
rosa_wichuraiana	Rw0G018080 Rw1G021400 Rw1G021430 Rw1G021450 Rw1G021460 Rw1G021530 Rw1G021550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	528
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	116, 129, 199
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	1 cut(s)	528
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	22, 41, 396, 782
AluBI	AGCT	5 cut(s)	134, 180, 308, 695, 721
AluI	AGCT	5 cut(s)	134, 180, 308, 695, 721
Alw26I	GTCTC	2 cut(s)	602, 693
AlwI	GGATC	3 cut(s)	116, 129, 199
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	4 cut(s)	89, 128, 131, 305
ApoI	RAATTY	1 cut(s)	452
AseI	ATTAAT	1 cut(s)	644
AsiGI	ACCGGT	1 cut(s)	388
Asp700I	GAANNNNTTC	2 cut(s)	270, 456
AspS9I	GGNCC	3 cut(s)	62, 371, 575
AsuHPI	GGTGA	2 cut(s)	250, 378
AvaII	GGWCC	2 cut(s)	62, 575
BamHI	GGATCC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BauI	CACGAG	1 cut(s)	105
BbvI	GCAGC	4 cut(s)	76, 115, 143, 317
BccI	CCATC	2 cut(s)	160, 416
BciVI	GTATCC	2 cut(s)	598, 623
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	602, 693
BfaI	CTAG	1 cut(s)	722
BfmI	CTRYAG	1 cut(s)	129
BfuI	GTATCC	2 cut(s)	598, 623
BisI	GCNGC	4 cut(s)	90, 129, 132, 306
BlpI	GCTNAGC	2 cut(s)	309, 543
BlsI	GCNGC	4 cut(s)	91, 130, 133, 307
Bme18I	GGWCC	2 cut(s)	62, 575
BmgT120I	GGNCC	3 cut(s)	62, 371, 575
BmiI	GGNNCC	2 cut(s)	102, 123
BmsI	GCATC	2 cut(s)	464, 671
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	1 cut(s)	675
Bpu1102I	GCTNAGC	2 cut(s)	309, 543
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	3 cut(s)	300, 315, 597
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	76, 115, 143, 317
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	2 cut(s)	602, 693
BsnI	GGCC	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	121, 204, 220, 673
Bsp1720I	GCTNAGC	2 cut(s)	309, 543
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	301, 316, 598
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	102, 123
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	3 cut(s)	116, 129, 199
BsrFI	RCCGGY	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	4 cut(s)	121, 204, 220, 673
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	86, 613, 786
Bst6I	CTCTTC	2 cut(s)	180, 408
BstAUI	TGTACA	1 cut(s)	595
BstDEI	CTNAG	6 cut(s)	181, 309, 324, 543, 606, 717
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	4 cut(s)	124, 207, 223, 676
BstMAI	GTCTC	2 cut(s)	602, 693
BstMBI	GATC	4 cut(s)	121, 204, 220, 673
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	76, 115, 143, 317
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	2 cut(s)	598, 623
BsuRI	GGCC	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 419
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	62, 371, 575
CseI	GACGC	2 cut(s)	739, 784
Csp6I	GTAC	1 cut(s)	596
CspAI	ACCGGT	1 cut(s)	388
CviAII	CATG	3 cut(s)	461, 528, 706
CviJI	RGCY	9 cut(s)	44, 134, 180, 308, 373, 542, 605, 695, 721
CviKI_1	RGCY	9 cut(s)	44, 134, 180, 308, 373, 542, 605, 695, 721
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	6 cut(s)	181, 309, 324, 543, 606, 717
DpnI	GATC	4 cut(s)	123, 206, 222, 675
DpnII	GATC	4 cut(s)	121, 204, 220, 673
Eam1104I	CTCTTC	2 cut(s)	180, 408
EarI	CTCTTC	2 cut(s)	180, 408
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	705
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	62, 575
EcoRI	GAATTC	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
FaeI	CATG	3 cut(s)	464, 531, 709
FatI	CATG	3 cut(s)	460, 527, 705
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	90, 129, 132, 306
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	4 cut(s)	90, 129, 132, 306
FspBI	CTAG	1 cut(s)	722
GluI	GCNGC	4 cut(s)	90, 129, 132, 306
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	2 cut(s)	739, 784
Hin1II	CATG	3 cut(s)	464, 531, 709
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	250, 378
Hpy166II	GTNNAC	4 cut(s)	82, 216, 575, 596
Hpy188I	TCNGA	5 cut(s)	204, 408, 538, 729, 770
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	4 cut(s)	82, 216, 575, 596
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	3 cut(s)	86, 613, 786
HpyCH4V	TGCA	4 cut(s)	92, 131, 344, 662
HpyF3I	CTNAG	6 cut(s)	181, 309, 324, 543, 606, 717
Hsp92II	CATG	3 cut(s)	464, 531, 709
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	121, 204, 220, 673
Lsp1109I	GCAGC	4 cut(s)	76, 115, 143, 317
LweI	GCATC	2 cut(s)	464, 671
MaeI	CTAG	1 cut(s)	722
MalI	GATC	4 cut(s)	123, 206, 222, 675
MboI	GATC	4 cut(s)	121, 204, 220, 673
MboII	GAAGA	5 cut(s)	147, 191, 197, 269, 395
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	6 cut(s)	166, 193, 345, 452, 554, 645
MnlI	CCTC	4 cut(s)	114, 440, 532, 647
MroXI	GAANNNNTTC	2 cut(s)	270, 456
MseI	TTAA	4 cut(s)	144, 165, 644, 648
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	308, 695
MspI	CCGG	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	4 cut(s)	121, 204, 220, 673
NlaIII	CATG	3 cut(s)	464, 531, 709
NlaIV	GGNNCC	2 cut(s)	102, 123
PacI	TTAATTAA	1 cut(s)	648
PagI	TCATGA	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	270, 456
PfeI	GAWTC	1 cut(s)	409
PflMI	CCANNNNNTGG	1 cut(s)	528
PinAI	ACCGGT	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	91, 130, 133, 307
PshBI	ATTAAT	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	102, 123
PspPI	GGNCC	3 cut(s)	62, 371, 575
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	2 cut(s)	308, 695
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	4 cut(s)	144, 165, 644, 648
SatI	GCNGC	4 cut(s)	90, 129, 132, 306
Sau3AI	GATC	4 cut(s)	121, 204, 220, 673
Sau96I	GGNCC	3 cut(s)	62, 371, 575
SetI	ASST	7 cut(s)	136, 182, 310, 580, 639, 697, 723
SfaNI	GCATC	2 cut(s)	464, 671
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	2 cut(s)	62, 575
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	6 cut(s)	166, 193, 345, 452, 554, 645
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	722
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	3 cut(s)	86, 613, 786
TaqI	TCGA	3 cut(s)	176, 472, 757
TasI	AATT	6 cut(s)	166, 193, 345, 452, 554, 645
TatI	WGTACW	1 cut(s)	595
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	4 cut(s)	144, 165, 644, 648
Tru9I	TTAA	4 cut(s)	144, 165, 644, 648
TscAI	CASTG	2 cut(s)	37, 419
TseI	GCWGC	4 cut(s)	89, 128, 131, 305
TspDTI	ATGAA	5 cut(s)	246, 279, 307, 449, 741
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	37, 419
Van91I	CCANNNNNTGG	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	62, 575
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	1 cut(s)	452
XmnI	GAANNNNTTC	2 cut(s)	270, 456
XspI	CTAG	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.