Methionine adenosyltransferase 2 subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CNOT1_HEAT | PF16418 | 482 - 623 | 4.8e-34 | CCR4-NOT transcription complex subunit 1 HEAT repeat |
| CNOT1_TTP_bind | PF16417 | 658 - 820 | 2.5e-67 | CCR4-NOT transcription complex subunit 1 TTP binding domain |
| CNOT1_CAF1_bind | PF16415 | 964 - 1181 | 6e-90 | CCR4-NOT transcription complex subunit 1 CAF1-binding domain |
| DUF3819 | PF12842 | 1282 - 1421 | 5.8e-48 | CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 |
| ARM_Cnot1 | PF25097 | 1629 - 1799 | 4.7e-53 | Cnot1 ARM repeat |
| NOT1_connector | PF23590 | 1653 - 1797 | 6.3e-16 | CCR4-NOT transcription complex subunit 1, NOT1_connector |
| Not1 | PF04054 | 2001 - 2360 | 6e-142 | CCR4-Not complex component, Not1 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3167 |
| AarI | CACCTGC | 3 cut(s) | 4789, 5365, 5548 |
| Acc16I | TGCGCA | 3 cut(s) | 2291, 3015, 4067 |
| Acc36I | ACCTGC | 6 cut(s) | 1425, 2305, 2707, 4789, 5365, 5548 |
| Acc65I | GGTACC | 2 cut(s) | 5583, 7132 |
| AccB1I | GGYRCC | 3 cut(s) | 5583, 6260, 7132 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 3856, 4538, 5275 |
| AccBSI | CCGCTC | 3 cut(s) | 2599, 5131, 7145 |
| AccI | GTMKAC | 1 cut(s) | 6976 |
| AccII | CGCG | 3 cut(s) | 3368, 5553, 6890 |
| AccIII | TCCGGA | 1 cut(s) | 4505 |
| AclI | AACGTT | 1 cut(s) | 6175 |
| AcoI | YGGCCR | 3 cut(s) | 1234, 2366, 5626 |
| AcvI | CACGTG | 2 cut(s) | 3841, 6467 |
| AcyI | GRCGYC | 1 cut(s) | 63 |
| AflII | CTTAAG | 2 cut(s) | 1595, 3250 |
| AflIII | ACRYGT | 4 cut(s) | 1072, 4042, 4299, 6466 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5986 |
| AhlI | ACTAGT | 1 cut(s) | 5102 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2012, 2044, 3843, 3875, 5139, 5171 |
| AleI | CACNNNNGTG | 1 cut(s) | 5652 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 6225, 6257 |
| Alw21I | GWGCWC | 2 cut(s) | 2761, 7051 |
| Alw26I | GTCTC | 7 cut(s) | 1825, 2608, 3901, 4484, 4811, 6950, 7133 |
| Alw44I | GTGCAC | 1 cut(s) | 7047 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 2867, 4538, 4835, 6772 |
| Ama87I | CYCGRG | 6 cut(s) | 310, 1685, 5360, 6098, 6299, 6346 |
| Aor13HI | TCCGGA | 1 cut(s) | 4505 |
| AoxI | GGCC | 9 cut(s) | 1234, 1653, 1967, 2366, 4968, 5158, 5451, 5626, 6161 |
| ApaLI | GTGCAC | 1 cut(s) | 7047 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3879, 3911 |
| AseI | ATTAAT | 2 cut(s) | 1401, 5745 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 201, 3622 |
| Asp718I | GGTACC | 2 cut(s) | 5583, 7132 |
| AspLEI | GCGC | 8 cut(s) | 2292, 3016, 3915, 4006, 4068, 5042, 6837, 7097 |
| AsuC2I | CCSGG | 1 cut(s) | 7031 |
| AsuII | TTCGAA | 1 cut(s) | 3095 |
| AsuNHI | GCTAGC | 1 cut(s) | 6136 |
| AvaI | CYCGRG | 6 cut(s) | 310, 1685, 5360, 6098, 6299, 6346 |
| AvaII | GGWCC | 7 cut(s) | 1776, 2071, 2519, 4238, 4535, 5683, 6781 |
| AxyI | CCTNAGG | 1 cut(s) | 2536 |
| BaeGI | GKGCMC | 1 cut(s) | 7051 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1334, 1334, 1367, 1367 |
| BalI | TGGCCA | 3 cut(s) | 1236, 2368, 5628 |
| BamHI | GGATCC | 1 cut(s) | 5995 |
| BanI | GGYRCC | 3 cut(s) | 5583, 6260, 7132 |
| BanII | GRGCYC | 2 cut(s) | 3051, 3259 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2482, 2514 |
| BauI | CACGAG | 3 cut(s) | 1013, 2805, 3258 |
| BbrPI | CACGTG | 2 cut(s) | 3841, 6467 |
| BbsI | GAAGAC | 2 cut(s) | 2766, 6518 |
| Bbv12I | GWGCWC | 2 cut(s) | 2761, 7051 |
| BbvCI | CCTCAGC | 1 cut(s) | 6610 |
| BceAI | ACGGC | 2 cut(s) | 1242, 2489 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 301, 335 |
| BciVI | GTATCC | 4 cut(s) | 946, 1216, 1362, 4314 |
| BclI | TGATCA | 1 cut(s) | 3282 |
| BcnI | CCSGG | 1 cut(s) | 7031 |
| BcoDI | GTCTC | 7 cut(s) | 1825, 2608, 3901, 4484, 4811, 6950, 7133 |
| BcuI | ACTAGT | 1 cut(s) | 5102 |
| BfmI | CTRYAG | 8 cut(s) | 551, 1955, 1971, 3924, 3999, 4200, 4722, 5369 |
| BfrI | CTTAAG | 2 cut(s) | 1595, 3250 |
| BfuAI | ACCTGC | 6 cut(s) | 1425, 2305, 2707, 4789, 5365, 5548 |
| BfuI | GTATCC | 4 cut(s) | 946, 1216, 1362, 4314 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 4025, 4976 |
| BglII | AGATCT | 1 cut(s) | 3420 |
| BmcAI | AGTACT | 3 cut(s) | 250, 901, 2375 |
| Bme18I | GGWCC | 7 cut(s) | 1776, 2071, 2519, 4238, 4535, 5683, 6781 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5986 |
| BmeT110I | CYCGRG | 6 cut(s) | 310, 1685, 5360, 6098, 6299, 6346 |
| BmrI | ACTGGG | 3 cut(s) | 2517, 2586, 5486 |
| BmtI | GCTAGC | 1 cut(s) | 6140 |
| BmuI | ACTGGG | 3 cut(s) | 2517, 2586, 5486 |
| BpiI | GAAGAC | 2 cut(s) | 2766, 6518 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 293, 325, 1031, 1063, 4703, 4735 |
| BpmI | CTGGAG | 6 cut(s) | 957, 1791, 2357, 2585, 2880, 4773 |
| Bpu10I | CCTNAGC | 2 cut(s) | 4710, 6610 |
| Bpu14I | TTCGAA | 1 cut(s) | 3095 |
| BpuEI | CTTGAG | 9 cut(s) | 869, 1367, 1730, 3437, 3509, 3699, 5635, 5819, 6518 |
| BpuMI | CCSGG | 1 cut(s) | 7031 |
| Bsa29I | ATCGAT | 1 cut(s) | 1340 |
| BsaAI | YACGTR | 4 cut(s) | 3129, 3841, 4491, 6467 |
| BsaBI | GATNNNNATC | 3 cut(s) | 803, 1944, 6528 |
| BsaHI | GRCGYC | 1 cut(s) | 63 |
| BsaI | GGTCTC | 2 cut(s) | 4484, 7133 |
| BsaWI | WCCGGW | 4 cut(s) | 879, 2465, 4505, 6238 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 5120, 5150, 5834, 5864, 6225, 6255, 6445, 6475 |
| Bse118I | RCCGGY | 1 cut(s) | 5586 |
| Bse1I | ACTGG | 9 cut(s) | 198, 989, 1653, 2523, 2581, 4020, 4445, 5492, 5975 |
| Bse21I | CCTNAGG | 1 cut(s) | 2536 |
| Bse3DI | GCAATG | 6 cut(s) | 590, 2285, 3191, 5058, 5334, 6056 |
| Bse8I | GATNNNNATC | 3 cut(s) | 803, 1944, 6528 |
| BseAI | TCCGGA | 1 cut(s) | 4505 |
| BseCI | ATCGAT | 1 cut(s) | 1340 |
| BseJI | GATNNNNATC | 3 cut(s) | 803, 1944, 6528 |
| BseMI | GCAATG | 6 cut(s) | 590, 2285, 3191, 5058, 5334, 6056 |
| BseNI | ACTGG | 9 cut(s) | 198, 989, 1653, 2523, 2581, 4020, 4445, 5492, 5975 |
| BseRI | GAGGAG | 7 cut(s) | 1751, 1922, 2823, 3197, 5141, 5757, 5933 |
| BseSI | GKGCMC | 1 cut(s) | 7051 |
| BseYI | CCCAGC | 1 cut(s) | 4650 |
| BsgI | GTGCAG | 4 cut(s) | 817, 3821, 4700, 5798 |
| Bsh1236I | CGCG | 3 cut(s) | 3368, 5553, 6890 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1340 |
| BshFI | GGCC | 9 cut(s) | 1236, 1655, 1969, 2368, 4970, 5160, 5453, 5628, 6163 |
| BshNI | GGYRCC | 3 cut(s) | 5583, 6260, 7132 |
| BshVI | ATCGAT | 1 cut(s) | 1340 |
| BsiEI | CGRYCG | 1 cut(s) | 1340 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2761, 7051 |
| BsiHKCI | CYCGRG | 6 cut(s) | 310, 1685, 5360, 6098, 6299, 6346 |
| BsiSI | CCGG | 6 cut(s) | 880, 2466, 4506, 5587, 6239, 7030 |
| BslFI | GGGAC | 6 cut(s) | 1149, 1789, 1850, 2505, 3730, 4348 |
| BsmAI | GTCTC | 7 cut(s) | 1825, 2608, 3901, 4484, 4811, 6950, 7133 |
| BsmBI | CGTCTC | 1 cut(s) | 6950 |
| BsmFI | GGGAC | 6 cut(s) | 1149, 1789, 1850, 2505, 3730, 4348 |
| BsmI | GAATGC | 4 cut(s) | 1043, 5020, 6226, 6354 |
| BsnI | GGCC | 9 cut(s) | 1236, 1655, 1969, 2368, 4970, 5160, 5453, 5628, 6163 |
| Bso31I | GGTCTC | 2 cut(s) | 4484, 7133 |
| BsoBI | CYCGRG | 6 cut(s) | 310, 1685, 5360, 6098, 6299, 6346 |
| Bsp119I | TTCGAA | 1 cut(s) | 3095 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2761, 3051, 3259, 7051 |
| Bsp13I | TCCGGA | 1 cut(s) | 4505 |
| Bsp19I | CCATGG | 2 cut(s) | 3969, 6968 |
| Bsp68I | TCGCGA | 1 cut(s) | 5553 |
| BspANI | GGCC | 9 cut(s) | 1236, 1655, 1969, 2368, 4970, 5160, 5453, 5628, 6163 |
| BspDI | ATCGAT | 1 cut(s) | 1340 |
| BspEI | TCCGGA | 1 cut(s) | 4505 |
| BspFNI | CGCG | 3 cut(s) | 3368, 5553, 6890 |
| BspHI | TCATGA | 1 cut(s) | 3058 |
| BspMAI | CTGCAG | 4 cut(s) | 555, 1959, 4003, 5373 |
| BspMI | ACCTGC | 6 cut(s) | 1425, 2305, 2707, 4789, 5365, 5548 |
| BspOI | GCTAGC | 1 cut(s) | 6140 |
| BspT104I | TTCGAA | 1 cut(s) | 3095 |
| BspT107I | GGYRCC | 3 cut(s) | 5583, 6260, 7132 |
| BspTI | CTTAAG | 2 cut(s) | 1595, 3250 |
| BspTNI | GGTCTC | 2 cut(s) | 4484, 7133 |
| BsrBI | CCGCTC | 3 cut(s) | 2599, 5131, 7145 |
| BsrDI | GCAATG | 6 cut(s) | 590, 2285, 3191, 5058, 5334, 6056 |
| BsrFI | RCCGGY | 1 cut(s) | 5586 |
| BsrI | ACTGG | 9 cut(s) | 198, 989, 1653, 2523, 2581, 4020, 4445, 5492, 5975 |
| BssAI | RCCGGY | 1 cut(s) | 5586 |
| BssNI | GRCGYC | 1 cut(s) | 63 |
| BssSI | CACGAG | 3 cut(s) | 1013, 2805, 3258 |
| BssT1I | CCWWGG | 6 cut(s) | 1949, 3825, 3969, 4974, 5983, 6968 |
| Bst2BI | CACGAG | 3 cut(s) | 1013, 2805, 3258 |
| Bst6I | CTCTTC | 6 cut(s) | 463, 1362, 2148, 3525, 4104, 5499 |
| BstACI | GRCGYC | 1 cut(s) | 63 |
| BstAFI | CTTAAG | 2 cut(s) | 1595, 3250 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1265, 2756, 4441, 6053, 6583 |
| BstBAI | YACGTR | 4 cut(s) | 3129, 3841, 4491, 6467 |
| BstBI | TTCGAA | 1 cut(s) | 3095 |
| BstDSI | CCRYGG | 2 cut(s) | 3969, 6968 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1904, 2821 |
| BstFNI | CGCG | 3 cut(s) | 3368, 5553, 6890 |
| BstHHI | GCGC | 8 cut(s) | 2292, 3016, 3915, 4006, 4068, 5042, 6837, 7097 |
| BstMAI | GTCTC | 7 cut(s) | 1825, 2608, 3901, 4484, 4811, 6950, 7133 |
| BstMCI | CGRYCG | 1 cut(s) | 1340 |
| BstNSI | RCATGY | 9 cut(s) | 521, 1076, 1103, 1160, 1259, 4046, 4053, 4303, 5662 |
| BstSFI | CTRYAG | 8 cut(s) | 551, 1955, 1971, 3924, 3999, 4200, 4722, 5369 |
| BstSLI | GKGCMC | 1 cut(s) | 7051 |
| BstUI | CGCG | 3 cut(s) | 3368, 5553, 6890 |
| BstV2I | GAAGAC | 2 cut(s) | 2766, 6518 |
| BstX2I | RGATCY | 6 cut(s) | 453, 3420, 4168, 5354, 5536, 5995 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1811, 5881 |
| BstYI | RGATCY | 6 cut(s) | 453, 3420, 4168, 5354, 5536, 5995 |
| Bsu15I | ATCGAT | 1 cut(s) | 1340 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2536 |
| BsuI | GTATCC | 4 cut(s) | 946, 1216, 1362, 4314 |
| BsuRI | GGCC | 9 cut(s) | 1236, 1655, 1969, 2368, 4970, 5160, 5453, 5628, 6163 |
| BsuTUI | ATCGAT | 1 cut(s) | 1340 |
| BtgI | CCRYGG | 2 cut(s) | 3969, 6968 |
| BtgZI | GCGATG | 2 cut(s) | 4099, 4595 |
| BtsI | GCAGTG | 5 cut(s) | 21, 3922, 5176, 5366, 5756 |
| BtuMI | TCGCGA | 1 cut(s) | 5553 |
| BveI | ACCTGC | 6 cut(s) | 1425, 2305, 2707, 4789, 5365, 5548 |
| CaiI | CAGNNNCTG | 4 cut(s) | 2867, 4538, 4835, 6772 |
| CciI | TCATGA | 1 cut(s) | 3058 |
| CfoI | GCGC | 8 cut(s) | 2292, 3016, 3915, 4006, 4068, 5042, 6837, 7097 |
| Cfr10I | RCCGGY | 1 cut(s) | 5586 |
| ClaI | ATCGAT | 1 cut(s) | 1340 |
| CpoI | CGGWCCG | 1 cut(s) | 5683 |
| CseI | GACGC | 5 cut(s) | 71, 680, 2342, 2701, 6807 |
| CsiI | ACCWGGT | 1 cut(s) | 4351 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 168, 203, 7086, 7121 |
| CspI | CGGWCCG | 1 cut(s) | 5683 |
| DraI | TTTAAA | 2 cut(s) | 3957, 6429 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5986 |
| EaeI | YGGCCR | 3 cut(s) | 1234, 2366, 5626 |
| Eam1104I | CTCTTC | 6 cut(s) | 463, 1362, 2148, 3525, 4104, 5499 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5986 |
| EarI | CTCTTC | 6 cut(s) | 463, 1362, 2148, 3525, 4104, 5499 |
| EciI | GGCGGA | 1 cut(s) | 4331 |
| Eco130I | CCWWGG | 6 cut(s) | 1949, 3825, 3969, 4974, 5983, 6968 |
| Eco24I | GRGCYC | 2 cut(s) | 3051, 3259 |
| Eco31I | GGTCTC | 2 cut(s) | 4484, 7133 |
| Eco32I | GATATC | 3 cut(s) | 1582, 2397, 6760 |
| Eco47I | GGWCC | 7 cut(s) | 1776, 2071, 2519, 4238, 4535, 5683, 6781 |
| Eco72I | CACGTG | 2 cut(s) | 3841, 6467 |
| Eco81I | CCTNAGG | 1 cut(s) | 2536 |
| Eco88I | CYCGRG | 6 cut(s) | 310, 1685, 5360, 6098, 6299, 6346 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1904, 2821 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1776, 4535 |
| EcoRV | GATATC | 3 cut(s) | 1582, 2397, 6760 |
| EcoT14I | CCWWGG | 6 cut(s) | 1949, 3825, 3969, 4974, 5983, 6968 |
| EcoT22I | ATGCAT | 4 cut(s) | 1270, 2287, 6049, 6058 |
| EcoT38I | GRGCYC | 2 cut(s) | 3051, 3259 |
| ErhI | CCWWGG | 6 cut(s) | 1949, 3825, 3969, 4974, 5983, 6968 |
| Esp3I | CGTCTC | 1 cut(s) | 6950 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1365, 1397, 4046, 4078, 5072, 5104, 6249, 6281 |
| FaqI | GGGAC | 6 cut(s) | 1149, 1789, 1850, 2505, 3730, 4348 |
| FauI | CCCGC | 1 cut(s) | 1518 |
| FauNDI | CATATG | 1 cut(s) | 3295 |
| FbaI | TGATCA | 1 cut(s) | 3282 |
| FblI | GTMKAC | 1 cut(s) | 6976 |
| FriOI | GRGCYC | 2 cut(s) | 3051, 3259 |
| FspI | TGCGCA | 3 cut(s) | 2291, 3015, 4067 |
| GlaI | GCGC | 8 cut(s) | 2291, 3015, 3914, 4005, 4067, 5041, 6836, 7096 |
| GsaI | CCCAGC | 1 cut(s) | 4654 |
| GsuI | CTGGAG | 6 cut(s) | 957, 1791, 2357, 2585, 2880, 4773 |
| HaeIII | GGCC | 9 cut(s) | 1236, 1655, 1969, 2368, 4970, 5160, 5453, 5628, 6163 |
| HapII | CCGG | 6 cut(s) | 880, 2466, 4506, 5587, 6239, 7030 |
| HgaI | GACGC | 5 cut(s) | 71, 680, 2342, 2701, 6807 |
| HhaI | GCGC | 8 cut(s) | 2292, 3016, 3915, 4006, 4068, 5042, 6837, 7097 |
| Hin1I | GRCGYC | 1 cut(s) | 63 |
| Hin6I | GCGC | 8 cut(s) | 2290, 3014, 3913, 4004, 4066, 5040, 6835, 7095 |
| HinP1I | GCGC | 8 cut(s) | 2290, 3014, 3913, 4004, 4066, 5040, 6835, 7095 |
| HincII | GTYRAC | 4 cut(s) | 448, 2055, 5968, 6187 |
| HindII | GTYRAC | 4 cut(s) | 448, 2055, 5968, 6187 |
| HindIII | AAGCTT | 2 cut(s) | 3224, 5081 |
| HpaI | GTTAAC | 1 cut(s) | 5968 |
| HpaII | CCGG | 6 cut(s) | 880, 2466, 4506, 5587, 6239, 7030 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 2695 |
| HpyCH4IV | ACGT | 9 cut(s) | 3128, 3657, 3840, 4437, 4490, 4795, 6175, 6466, 6943 |
| HpySE526I | ACGT | 9 cut(s) | 3128, 3657, 3840, 4437, 4490, 4795, 6175, 6466, 6943 |
| Hsp92I | GRCGYC | 1 cut(s) | 63 |
| HspAI | GCGC | 8 cut(s) | 2290, 3014, 3913, 4004, 4066, 5040, 6835, 7095 |
| KflI | GGGWCCC | 1 cut(s) | 1776 |
| Kpn2I | TCCGGA | 1 cut(s) | 4505 |
| KpnI | GGTACC | 2 cut(s) | 5587, 7136 |
| Ksp22I | TGATCA | 1 cut(s) | 3282 |
| KspAI | GTTAAC | 1 cut(s) | 5968 |
| MabI | ACCWGGT | 1 cut(s) | 4351 |
| MaeII | ACGT | 9 cut(s) | 3128, 3657, 3840, 4437, 4490, 4795, 6175, 6466, 6943 |
| MbiI | CCGCTC | 3 cut(s) | 2599, 5131, 7145 |
| MfeI | CAATTG | 3 cut(s) | 3864, 4221, 6819 |
| MflI | RGATCY | 6 cut(s) | 453, 3420, 4168, 5354, 5536, 5995 |
| MhlI | GDGCHC | 4 cut(s) | 2761, 3051, 3259, 7051 |
| MlsI | TGGCCA | 3 cut(s) | 1236, 2368, 5628 |
| MluNI | TGGCCA | 3 cut(s) | 1236, 2368, 5628 |
| MmeI | TCCRAC | 7 cut(s) | 1828, 3559, 3591, 4851, 5719, 6196, 6918 |
| Mox20I | TGGCCA | 3 cut(s) | 1236, 2368, 5628 |
| Mph1103I | ATGCAT | 4 cut(s) | 1270, 2287, 6049, 6058 |
| MroI | TCCGGA | 1 cut(s) | 4505 |
| MroXI | GAANNNNTTC | 2 cut(s) | 201, 3622 |
| MscI | TGGCCA | 3 cut(s) | 1236, 2368, 5628 |
| MslI | CAYNNNNRTG | 7 cut(s) | 757, 1273, 1619, 1812, 4608, 5652, 6359 |
| Msp20I | TGGCCA | 3 cut(s) | 1236, 2368, 5628 |
| MspA1I | CMGCKG | 5 cut(s) | 496, 556, 1210, 2867, 6614 |
| MspCI | CTTAAG | 2 cut(s) | 1595, 3250 |
| MspI | CCGG | 6 cut(s) | 880, 2466, 4506, 5587, 6239, 7030 |
| MunI | CAATTG | 3 cut(s) | 3864, 4221, 6819 |
| Mva1269I | GAATGC | 4 cut(s) | 1043, 5020, 6226, 6354 |
| MvnI | CGCG | 3 cut(s) | 3368, 5553, 6890 |
| NciI | CCSGG | 1 cut(s) | 7031 |
| NcoI | CCATGG | 2 cut(s) | 3969, 6968 |
| NdeI | CATATG | 1 cut(s) | 3295 |
| NheI | GCTAGC | 1 cut(s) | 6136 |
| NmuCI | GTSAC | 6 cut(s) | 1301, 2639, 2802, 4045, 4882, 5364 |
| NruI | TCGCGA | 1 cut(s) | 5553 |
| NsbI | TGCGCA | 3 cut(s) | 2291, 3015, 4067 |
| NsiI | ATGCAT | 4 cut(s) | 1270, 2287, 6049, 6058 |
| NspI | RCATGY | 9 cut(s) | 521, 1076, 1103, 1160, 1259, 4046, 4053, 4303, 5662 |
| NspV | TTCGAA | 1 cut(s) | 3095 |
| OliI | CACNNNNGTG | 1 cut(s) | 5652 |
| PaeI | GCATGC | 1 cut(s) | 5662 |
| PaeR7I | CTCGAG | 3 cut(s) | 310, 1685, 6098 |
| PagI | TCATGA | 1 cut(s) | 3058 |
| PaqCI | CACCTGC | 3 cut(s) | 4789, 5365, 5548 |
| PciI | ACATGT | 3 cut(s) | 1072, 4042, 4299 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1226, 2803 |
| PctI | GAATGC | 4 cut(s) | 1043, 5020, 6226, 6354 |
| PdmI | GAANNNNTTC | 2 cut(s) | 201, 3622 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 3856, 4538, 5275 |
| PfoI | TCCNGGA | 1 cut(s) | 6912 |
| Ple19I | CGATCG | 1 cut(s) | 1340 |
| PmaCI | CACGTG | 2 cut(s) | 3841, 6467 |
| PmlI | CACGTG | 2 cut(s) | 3841, 6467 |
| Ppu21I | YACGTR | 4 cut(s) | 3129, 3841, 4491, 6467 |
| PpuMI | RGGWCCY | 2 cut(s) | 1776, 4535 |
| PscI | ACATGT | 3 cut(s) | 1072, 4042, 4299 |
| PshBI | ATTAAT | 2 cut(s) | 1401, 5745 |
| PsiI | TTATAA | 1 cut(s) | 3167 |
| Psp1406I | AACGTT | 1 cut(s) | 6175 |
| Psp5II | RGGWCCY | 2 cut(s) | 1776, 4535 |
| PspCI | CACGTG | 2 cut(s) | 3841, 6467 |
| PspFI | CCCAGC | 1 cut(s) | 4650 |
| PspPPI | RGGWCCY | 2 cut(s) | 1776, 4535 |
| PspXI | VCTCGAGB | 1 cut(s) | 6098 |
| PstI | CTGCAG | 4 cut(s) | 555, 1959, 4003, 5373 |
| PstNI | CAGNNNCTG | 4 cut(s) | 2867, 4538, 4835, 6772 |
| PsuI | RGATCY | 6 cut(s) | 453, 3420, 4168, 5354, 5536, 5995 |
| PvuI | CGATCG | 1 cut(s) | 1340 |
| PvuII | CAGCTG | 4 cut(s) | 556, 1210, 2867, 6614 |
| RruI | TCGCGA | 1 cut(s) | 5553 |
| RseI | CAYNNNNRTG | 7 cut(s) | 757, 1273, 1619, 1812, 4608, 5652, 6359 |
| Rsr2I | CGGWCCG | 1 cut(s) | 5683 |
| RsrII | CGGWCCG | 1 cut(s) | 5683 |
| ScaI | AGTACT | 3 cut(s) | 250, 901, 2375 |
| SduI | GDGCHC | 4 cut(s) | 2761, 3051, 3259, 7051 |
| SexAI | ACCWGGT | 1 cut(s) | 4351 |
| SfcI | CTRYAG | 8 cut(s) | 551, 1955, 1971, 3924, 3999, 4200, 4722, 5369 |
| Sfr274I | CTCGAG | 3 cut(s) | 310, 1685, 6098 |
| SfuI | TTCGAA | 1 cut(s) | 3095 |
| SinI | GGWCC | 7 cut(s) | 1776, 2071, 2519, 4238, 4535, 5683, 6781 |
| SlaI | CTCGAG | 3 cut(s) | 310, 1685, 6098 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 757, 1273, 1619, 1812, 4608, 5652, 6359 |
| SpeI | ACTAGT | 1 cut(s) | 5102 |
| SphI | GCATGC | 1 cut(s) | 5662 |
| SspI | AATATT | 4 cut(s) | 478, 1575, 2953, 4077 |
| StyI | CCWWGG | 6 cut(s) | 1949, 3825, 3969, 4974, 5983, 6968 |
| TaiI | ACGT | 9 cut(s) | 3131, 3660, 3843, 4440, 4493, 4798, 6178, 6469, 6946 |
| TaqII | GACCGA | 3 cut(s) | 5700, 6530, 6581 |
| TatI | WGTACW | 7 cut(s) | 248, 899, 1294, 2157, 2373, 5193, 6652 |
| TauI | GCSGC | 3 cut(s) | 1655, 4637, 4973 |
| TseFI | GTSAC | 6 cut(s) | 1301, 2639, 2802, 4045, 4882, 5364 |
| Tsp45I | GTSAC | 6 cut(s) | 1301, 2639, 2802, 4045, 4882, 5364 |
| TspGWI | ACGGA | 6 cut(s) | 635, 1235, 1600, 2790, 5696, 5720 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 3856, 4538, 5275 |
| Vha464I | CTTAAG | 2 cut(s) | 1595, 3250 |
| VneI | GTGCAC | 1 cut(s) | 7047 |
| VpaK11BI | GGWCC | 7 cut(s) | 1776, 2071, 2519, 4238, 4535, 5683, 6781 |
| VspI | ATTAAT | 2 cut(s) | 1401, 5745 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1904, 2821 |
| XbaI | TCTAGA | 2 cut(s) | 1279, 4129 |
| XceI | RCATGY | 9 cut(s) | 521, 1076, 1103, 1160, 1259, 4046, 4053, 4303, 5662 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 981, 3384, 4162, 4919, 5033 |
| XhoI | CTCGAG | 3 cut(s) | 310, 1685, 6098 |
| XmiI | GTMKAC | 1 cut(s) | 6976 |
| XmnI | GAANNNNTTC | 2 cut(s) | 201, 3622 |
| ZrmI | AGTACT | 3 cut(s) | 250, 901, 2375 |
| Zsp2I | ATGCAT | 4 cut(s) | 1270, 2287, 6049, 6058 |