MD04G1210900.v1.1

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000047
Physical Location & Seq
Reverse (-)
29523287 .. 29525923
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1210900.v1.1.491

Sequence Viewer

Length: 2637 bp
ATGTCACACTTGACAAGGTTGGAGGTCCTTGATATTTCTCAAAGTTATATCTTGAGCAGCGAGCTTGAAATCCCGAAGTTCAGCATACTCTTTCAGAACCTCACGGAGCTTACAGAGCTTTATCTTGACGGTATAGACGTATCAGCAGAGGGGACTCACTGGTGCCAAGCGATATCATCTTCACTGCCAAACCTAAGGGTGTTGAGCTTGTATAGAACTAATCTTTCAGGTCCTATTGATCAATCCCTCGCTAAACTTCAGTCTCTATCCGTGATTCAATTGGGTGGTAGTCCCAATAATATCTCTGGTCCAATTCCAGAATTCTTTTCCAACTTCTCAAACCTGACGGTGTTGAACTTGGACGGAAACAATATCTCTGCTCCGGTTCCAGGATTCTTTGCCAATTTTTCAAAGTTGACTACCTTGAGGCTACGTGATTGTGGGTTAAATGGAACATTTCCGAAGCAGATCTTTCAGGTACCTACTCTACAAACTCTTGACCTCTCCTTTAATCTGGAACTTCATGGTTCCTTGCCAGAATTTCCCAAGAATGGATCTCTTCGATCCTTGATTTTAAGCCAGACAAGCTTTTCAGGGTTATTGCACGACTCTATTGGCAACCTCAACATGTTGTCCACACTAGACCTTTCCGGATGCAATTTCACTGGATCAATCCCAAAGTCAATCGGAAACCTAACGAAATTGGCTTATTTGTCCTTGTCATCAAACATGTTTAATGGTCCAATTAGTTCTATTCACTGGGAAAACCTTATTAATCTGGTACATCTCTCTTTGTACGACAATCAACTGGTGGGGAGCATTCCGTCGTCTCTGTTTTCTCTTCCCTTGTTGCCGGGCTTGGTACTTTCCCATAATAATCTCTCTGGGCAACTCCCTGAATTTTTTAACGTCTCTTCTAGTTTAATTTCTAACATTGATTTGAGTTTCAACTATTTGGAAGGGCCAGTTCCCGTGTCTATCTTTAATTTTCGAGGGCTTTGGGAGCTCTTTCTTTCTTCAAACAATTTCAGTGCCTTTCCTTTTAACGGTCCTCAGCAGCTGCCAAAGCTGAGGATAATTGATCTTTCGCACAATAGCTTGCTGGTTTTATACAATGGCGGCAATTCCTCATACTCTTCATTTCCTCAACTTACTAATTTCAGTTTAGTTTCCAACAAGTTGAGAACATTCCCAGTTTTCTTGAGAAATCAAACCTATTTAAGAAACTTGGACCTTTCAGAAAACCAAATTCAAGGCCACCTACCCAATTGGATATGGAAGCTCGACCATCTTGATTACCTAAATGTTTCTTATAATGCCTTGGAAAGTCTCGAAGGTCCTTTCATCAACTCCACATCTCAGGTGTCTAAGCTTGACCTTCATTCAAACCAGCTTAAGGGGCCAATTTCAGTTGTCCCACCATATGTCGAATATCTAGATTACTCGAACAATCATTTCAGTTCTAGTATTCCAGTATCAATATGCAATGCAAGTCATCTTTGCGCTCTTGATTTGTCCAGTAATTCTCTGAGTGGTGAGATTCCTCAGTGCTTGGCTGCAATGAGCACACTCATGACACTTAACGTCAGGAAAAACAACATTACTGGAATGATTTCTAATCTTGAATTTCCTGAAAACTGTGAGTCATTTGAAGCTCTAGACCTCAGCCAAAATCAGATTGAAGGTCAATTTCCAAGGTCTCTAGCCAGGTGCAAAAGGTTAATGTTTTTAAACCTTGAAGAAAATCAGATAACAGACACCTTCCCATGCTTGTTGAAGACCATCTCCACCTTGATCGTTCTTGCTTTGCGGTCCAACAATTTCTATGGAGGCATTGGATGTCCACTAGTGAAGACCAATGTCACCTGGCCGGTTCTTCAAATCCTAGACTTAGCTTACAACAATTTCAATGGTGAAGTACCAGGATTCTCTTTGACAACATGGCAAGCAATGAAGGATAACACAGATATTGGCTTCTTGTCGACAGTCAATGTTTCTAACCGTCCCTCTTGTAACGGACTGGGTTCTGCACGTATTAGAGGAGGAACCCCTTGTAAAAGAGCGGTTGTATTTTCGTATGAGCCTACTATAACGATTACAAGCAAAGGTTTAAAGATGGATCTGGCAAAGATTCTATCCGTCTTGACCTTGATTGACTTCTCATGCAACAATTTCAGTGGGTCAATTCCCAAGGAAATGGGAGCTTTGAAATCTTTATATTTTCTCAACTTGTCGAGTAACGCTTTCACAGGTGAAATCCCATCATCATTTGGTAACATGCGACAACTCGAGTCCTTGGACTTGTCACAGAACAAGTTGAGCGGGCAAATCCCACAACAGCTGGCAAAGCTTAATTTCCTTGCATTCCTGAATCTCTCGAATAATCAACTTGTCGGCAAGATCCCAGCTGGTACTCAAATTTTAACATTTCCAAGAGACTCATTTACAGGGAATAAAGGATTATGGGGGCCTCCGCTGATGGTGGATAGTAAAGCAAGATTGTCACCGCCACCAACATTAAATGGAAGCCATCCAAATTCTACCGATGAGATTGATTGGGATCTTATTAGCGTCGAAATTGGATTTGTATTTGGCTTTGCAGTTTGGGTCACTTGTGTTCTTCAAGAGATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

879

Amino Acids

96.7

Weight (kDa)

5.53

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 99 - 149 9.4e-06 Leucine rich repeat
LRR_14 PF23598 186 - 267 9.2e-08 Leucine-rich repeat region
LRR_8 PF13855 382 - 441 2.6e-06 Leucine rich repeat
LRR_8 PF13855 523 - 584 5.8e-06 Leucine rich repeat
LRR_14 PF23598 710 - 797 7.6e-07 Leucine-rich repeat region
LRR_8 PF13855 754 - 797 1.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1314
Acc65I GGTACC 1 cut(s) 478
AccB1I GGYRCC 2 cut(s) 162, 478
AccBSI CCGCTC 2 cut(s) 2063, 2322
AccI GTMKAC 1 cut(s) 1982
AccIII TCCGGA 1 cut(s) 650
AciI CCGC 6 cut(s) 1119, 1810, 2063, 2322, 2474, 2507
AclWI GGATC 6 cut(s) 558, 562, 676, 2127, 2395, 2568
AcoI YGGCCR 1 cut(s) 1868
AcsI RAATTY 7 cut(s) 320, 539, 899, 1248, 1625, 2418, 2536
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 6 cut(s) 480, 783, 797, 864, 1920, 2413
AfiI CCNNNNNNNGG 4 cut(s) 389, 551, 1046, 1396
AflII CTTAAG 1 cut(s) 1394
AflIII ACRYGT 2 cut(s) 627, 729
AhlI ACTAGT 1 cut(s) 1846
AjnI CCWGG 4 cut(s) 388, 1706, 1865, 1921
Alw21I GWGCWC 2 cut(s) 1008, 1568
Alw26I GTCTC 6 cut(s) 267, 834, 916, 1334, 1704, 2430
AlwI GGATC 6 cut(s) 558, 562, 676, 2127, 2395, 2568
AlwNI CAGNNNCTG 1 cut(s) 1060
Ama87I CYCGRG 1 cut(s) 2288
Aor13HI TCCGGA 1 cut(s) 650
AoxI GGCC 5 cut(s) 962, 1255, 1400, 1868, 2468
ApeKI GCWGC 4 cut(s) 57, 1057, 1060, 1556
ApoI RAATTY 7 cut(s) 320, 539, 899, 1248, 1625, 2418, 2536
AseI ATTAAT 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 1612
Asp718I GGTACC 1 cut(s) 478
AspLEI GCGC 1 cut(s) 1505
AsuC2I CCSGG 1 cut(s) 855
AsuHPI GGTGA 5 cut(s) 1547, 1855, 1925, 2264, 2496
AvaI CYCGRG 1 cut(s) 2288
AvaII GGWCC 8 cut(s) 25, 230, 308, 740, 1049, 1231, 1337, 1812
AxyI CCTNAGG 1 cut(s) 194
BanI GGYRCC 2 cut(s) 162, 478
BanII GRGCYC 1 cut(s) 1008
BbsI GAAGAC 2 cut(s) 1784, 1859
Bbv12I GWGCWC 2 cut(s) 1008, 1568
BbvCI CCTCAGC 3 cut(s) 1053, 1070, 1664
BbvI GCAGC 4 cut(s) 69, 1047, 1069, 1543
BccI CCATC 7 cut(s) 1296, 1790, 2110, 2269, 2473, 2538, 2623
BciT130I CCWGG 4 cut(s) 390, 1708, 1867, 1923
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 855
BcoDI GTCTC 6 cut(s) 267, 834, 916, 1334, 1704, 2430
BcuI ACTAGT 1 cut(s) 1846
BfaI CTAG 8 cut(s) 641, 918, 1436, 1464, 1658, 1703, 1847, 1886
BfrI CTTAAG 1 cut(s) 1394
BglII AGATCT 1 cut(s) 468
BisI GCNGC 5 cut(s) 58, 1058, 1061, 1120, 1557
BlsI GCNGC 5 cut(s) 59, 1059, 1062, 1121, 1558
Bme1390I CCNGG 5 cut(s) 390, 855, 1708, 1867, 1923
Bme18I GGWCC 8 cut(s) 25, 230, 308, 740, 1049, 1231, 1337, 1812
BmeT110I CYCGRG 1 cut(s) 2288
BmiI GGNNCC 7 cut(s) 164, 387, 480, 529, 1401, 2047, 2469
BmrFI CCNGG 5 cut(s) 390, 855, 1708, 1867, 1923
BmrI ACTGGG 3 cut(s) 769, 1187, 2030
BmsI GCATC 1 cut(s) 644
BmuI ACTGGG 3 cut(s) 769, 1187, 2030
BoxI GACNNNNGTC 1 cut(s) 1859
BpiI GAAGAC 2 cut(s) 1784, 1859
Bpu10I CCTNAGC 3 cut(s) 1053, 1070, 1664
BpuEI CTTGAG 3 cut(s) 73, 445, 1222
BpuMI CCSGG 1 cut(s) 855
BsaAI YACGTR 2 cut(s) 434, 2033
BsaBI GATNNNNATC 1 cut(s) 2559
BsaI GGTCTC 1 cut(s) 1704
BsaJI CCNNGG 4 cut(s) 1320, 1694, 2190, 2295
BsaWI WCCGGW 2 cut(s) 382, 650
Bsc4I CCNNNNNNNGG 4 cut(s) 389, 551, 1046, 1396
Bse118I RCCGGY 1 cut(s) 1870
Bse21I CCTNAGG 1 cut(s) 194
Bse3DI GCAATG 3 cut(s) 1492, 1566, 1956
Bse8I GATNNNNATC 1 cut(s) 2559
BseAI TCCGGA 1 cut(s) 650
BseBI CCWGG 4 cut(s) 390, 1708, 1867, 1923
BseDI CCNNGG 4 cut(s) 1320, 1694, 2190, 2295
BseGI GGATG 3 cut(s) 659, 1844, 2530
BseJI GATNNNNATC 1 cut(s) 2559
BseLI CCNNNNNNNGG 4 cut(s) 389, 551, 1046, 1396
BseMI GCAATG 3 cut(s) 1492, 1566, 1956
BseMII CTCAG 6 cut(s) 1061, 1067, 1373, 1520, 1559, 1678
BseRI GAGGAG 1 cut(s) 2055
BseXI GCAGC 4 cut(s) 69, 1047, 1069, 1543
BseYI CCCAGC 1 cut(s) 2404
BsgI GTGCAG 1 cut(s) 2013
BshFI GGCC 5 cut(s) 964, 1257, 1402, 1870, 2470
BshNI GGYRCC 2 cut(s) 162, 478
BsiHKAI GWGCWC 2 cut(s) 1008, 1568
BsiHKCI CYCGRG 1 cut(s) 2288
BsiSI CCGG 4 cut(s) 383, 651, 854, 1871
BslFI GGGAC 4 cut(s) 166, 276, 1400, 1989
BslI CCNNNNNNNGG 4 cut(s) 389, 551, 1046, 1396
BsmAI GTCTC 6 cut(s) 267, 834, 916, 1334, 1704, 2430
BsmBI CGTCTC 2 cut(s) 834, 916
BsmFI GGGAC 4 cut(s) 166, 276, 1400, 1989
BsmI GAATGC 2 cut(s) 819, 2363
BsnI GGCC 5 cut(s) 964, 1257, 1402, 1870, 2470
Bso31I GGTCTC 1 cut(s) 1704
BsoBI CYCGRG 1 cut(s) 2288
Bsp1286I GDGCHC 2 cut(s) 1008, 1568
Bsp13I TCCGGA 1 cut(s) 650
BspACI CCGC 6 cut(s) 1119, 1810, 2063, 2322, 2474, 2507
BspANI GGCC 5 cut(s) 964, 1257, 1402, 1870, 2470
BspCNI CTCAG 6 cut(s) 1062, 1066, 1372, 1521, 1558, 1677
BspEI TCCGGA 1 cut(s) 650
BspHI TCATGA 1 cut(s) 1572
BspLI GGNNCC 7 cut(s) 164, 387, 480, 529, 1401, 2047, 2469
BspPI GGATC 6 cut(s) 558, 562, 676, 2127, 2395, 2568
BspT107I GGYRCC 2 cut(s) 162, 478
BspTI CTTAAG 1 cut(s) 1394
BspTNI GGTCTC 1 cut(s) 1704
BsrBI CCGCTC 2 cut(s) 2063, 2322
BsrDI GCAATG 3 cut(s) 1492, 1566, 1956
BsrFI RCCGGY 1 cut(s) 1870
BssAI RCCGGY 1 cut(s) 1870
BssECI CCNNGG 4 cut(s) 1320, 1694, 2190, 2295
BssT1I CCWWGG 4 cut(s) 1320, 1694, 2190, 2295
Bst2UI CCWGG 4 cut(s) 390, 1708, 1867, 1923
Bst4CI ACNGT 6 cut(s) 131, 349, 1049, 1640, 1987, 2003
Bst6I CTCTTC 4 cut(s) 564, 846, 919, 1141
BstAFI CTTAAG 1 cut(s) 1394
BstBAI YACGTR 2 cut(s) 434, 2033
BstC8I GCNNGC 5 cut(s) 62, 1100, 1947, 2324, 2343
BstDEI CTNAG 9 cut(s) 194, 1053, 1070, 1359, 1368, 1529, 1545, 1664, 1891
BstF5I GGATG 3 cut(s) 659, 1844, 2530
BstHHI GCGC 1 cut(s) 1505
BstMAI GTCTC 6 cut(s) 267, 834, 916, 1334, 1704, 2430
BstMWI GCNNNNNNNGC 6 cut(s) 115, 585, 1003, 1066, 1399, 2347
BstNI CCWGG 4 cut(s) 390, 1708, 1867, 1923
BstNSI RCATGY 3 cut(s) 631, 733, 2281
BstPAI GACNNNNGTC 1 cut(s) 1859
BstSCI CCNGG 5 cut(s) 388, 853, 1706, 1865, 1921
BstV1I GCAGC 4 cut(s) 69, 1047, 1069, 1543
BstV2I GAAGAC 2 cut(s) 1784, 1859
BstX2I RGATCY 5 cut(s) 468, 554, 2119, 2400, 2560
BstXI CCANNNNNNTGG 1 cut(s) 2197
BstYI RGATCY 5 cut(s) 468, 554, 2119, 2400, 2560
Bsu36I CCTNAGG 1 cut(s) 194
BsuRI GGCC 5 cut(s) 964, 1257, 1402, 1870, 2470
BtsCI GGATG 3 cut(s) 659, 1844, 2530
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 7 cut(s) 157, 182, 663, 757, 1036, 1553, 2182
Cac8I GCNNGC 5 cut(s) 62, 1100, 1947, 2324, 2343
CaiI CAGNNNCTG 1 cut(s) 1060
CciI TCATGA 1 cut(s) 1572
CfoI GCGC 1 cut(s) 1505
Cfr10I RCCGGY 1 cut(s) 1870
CseI GACGC 1 cut(s) 2560
Csp6I GTAC 6 cut(s) 479, 782, 796, 863, 1919, 2412
CspCI CAANNNNNGTGG 2 cut(s) 2158, 2193
CviAII CATG 8 cut(s) 524, 628, 730, 1573, 1767, 1941, 2163, 2278
CviQI GTAC 6 cut(s) 479, 782, 796, 863, 1919, 2412
DdeI CTNAG 9 cut(s) 194, 1053, 1070, 1359, 1368, 1529, 1545, 1664, 1891
DraI TTTAAA 2 cut(s) 1731, 2112
EaeI YGGCCR 1 cut(s) 1868
Eam1104I CTCTTC 4 cut(s) 564, 846, 919, 1141
EarI CTCTTC 4 cut(s) 564, 846, 919, 1141
Ecl136II GAGCTC 1 cut(s) 1006
Eco130I CCWWGG 4 cut(s) 1320, 1694, 2190, 2295
Eco24I GRGCYC 1 cut(s) 1008
Eco31I GGTCTC 1 cut(s) 1704
Eco32I GATATC 1 cut(s) 174
Eco47I GGWCC 8 cut(s) 25, 230, 308, 740, 1049, 1231, 1337, 1812
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 242
Eco81I CCTNAGG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 2288
EcoICRI GAGCTC 1 cut(s) 1006
EcoO109I RGGNCCY 4 cut(s) 25, 230, 1337, 2468
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 4 cut(s) 388, 1706, 1865, 1921
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 4 cut(s) 1320, 1694, 2190, 2295
EcoT38I GRGCYC 1 cut(s) 1008
ErhI CCWWGG 4 cut(s) 1320, 1694, 2190, 2295
Esp3I CGTCTC 2 cut(s) 834, 916
FaeI CATG 8 cut(s) 527, 631, 733, 1576, 1770, 1944, 2166, 2281
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 4 cut(s) 166, 276, 1400, 1989
FatI CATG 8 cut(s) 523, 627, 729, 1572, 1766, 1940, 2162, 2277
FauI CCCGC 1 cut(s) 2315
FauNDI CATATG 1 cut(s) 1423
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 1982
Fnu4HI GCNGC 5 cut(s) 58, 1058, 1061, 1120, 1557
FokI GGATG 3 cut(s) 666, 1851, 2517
FriOI GRGCYC 1 cut(s) 1008
Fsp4HI GCNGC 5 cut(s) 58, 1058, 1061, 1120, 1557
FspBI CTAG 8 cut(s) 641, 918, 1436, 1464, 1658, 1703, 1847, 1886
GlaI GCGC 1 cut(s) 1504
GluI GCNGC 5 cut(s) 58, 1058, 1061, 1120, 1557
GsaI CCCAGC 1 cut(s) 2408
HaeIII GGCC 5 cut(s) 964, 1257, 1402, 1870, 2470
HapII CCGG 4 cut(s) 383, 651, 854, 1871
HgaI GACGC 1 cut(s) 2560
HhaI GCGC 1 cut(s) 1505
Hin1II CATG 8 cut(s) 527, 631, 733, 1576, 1770, 1944, 2166, 2281
Hin6I GCGC 1 cut(s) 1503
HinP1I GCGC 1 cut(s) 1503
HincII GTYRAC 2 cut(s) 417, 1983
HindII GTYRAC 2 cut(s) 417, 1983
HindIII AAGCTT 3 cut(s) 586, 1370, 2348
HpaII CCGG 4 cut(s) 383, 651, 854, 1871
HphI GGTGA 5 cut(s) 1547, 1855, 1925, 2264, 2496
Hpy166II GTNNAC 4 cut(s) 417, 636, 1844, 1983
Hpy188I TCNGA 7 cut(s) 96, 462, 689, 1240, 1530, 1677, 1749
Hpy8I GTNNAC 4 cut(s) 417, 636, 1844, 1983
Hpy99I CGWCG 2 cut(s) 829, 2576
HpyAV CCTTC 6 cut(s) 953, 1328, 1388, 1676, 1771, 1948
HpyCH4III ACNGT 6 cut(s) 131, 349, 1049, 1640, 1987, 2003
HpyCH4IV ACGT 5 cut(s) 138, 433, 909, 1584, 2032
HpyF10VI GCNNNNNNNGC 6 cut(s) 115, 585, 1003, 1066, 1399, 2347
HpyF3I CTNAG 9 cut(s) 194, 1053, 1070, 1359, 1368, 1529, 1545, 1664, 1891
HpySE526I ACGT 5 cut(s) 138, 433, 909, 1584, 2032
Hsp92II CATG 8 cut(s) 527, 631, 733, 1576, 1770, 1944, 2166, 2281
HspAI GCGC 1 cut(s) 1503
Kpn2I TCCGGA 1 cut(s) 650
KpnI GGTACC 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 238
LmnI GCTCC 5 cut(s) 106, 385, 816, 1003, 2201
Lsp1109I GCAGC 4 cut(s) 69, 1047, 1069, 1543
LweI GCATC 1 cut(s) 644
MaeI CTAG 8 cut(s) 641, 918, 1436, 1464, 1658, 1703, 1847, 1886
MaeII ACGT 5 cut(s) 138, 433, 909, 1584, 2032
MaeIII GTNAC 8 cut(s) 3, 1861, 2012, 2237, 2273, 2304, 2502, 2608
MbiI CCGCTC 2 cut(s) 2063, 2322
MfeI CAATTG 2 cut(s) 278, 1267
MflI RGATCY 5 cut(s) 468, 554, 2119, 2400, 2560
MhlI GDGCHC 2 cut(s) 1008, 1568
MlyI GAGTC 5 cut(s) 148, 602, 1652, 2300, 2432
MmeI TCCRAC 3 cut(s) 354, 1197, 1839
MroI TCCGGA 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 1612
MslI CAYNNNNRTG 1 cut(s) 1571
MspA1I CMGCKG 4 cut(s) 1060, 2341, 2408, 2476
MspCI CTTAAG 1 cut(s) 1394
MspI CCGG 4 cut(s) 383, 651, 854, 1871
MspR9I CCNGG 5 cut(s) 390, 855, 1708, 1867, 1923
MunI CAATTG 2 cut(s) 278, 1267
Mva1269I GAATGC 2 cut(s) 819, 2363
MvaI CCWGG 4 cut(s) 390, 1708, 1867, 1923
MwoI GCNNNNNNNGC 6 cut(s) 115, 585, 1003, 1066, 1399, 2347
NciI CCSGG 1 cut(s) 855
NdeI CATATG 1 cut(s) 1423
NlaIII CATG 8 cut(s) 527, 631, 733, 1576, 1770, 1944, 2166, 2281
NlaIV GGNNCC 7 cut(s) 164, 387, 480, 529, 1401, 2047, 2469
NmuCI GTSAC 5 cut(s) 3, 1861, 2304, 2502, 2608
NspI RCATGY 3 cut(s) 631, 733, 2281
PaeR7I CTCGAG 1 cut(s) 2288
PagI TCATGA 1 cut(s) 1572
PciI ACATGT 2 cut(s) 627, 729
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 2 cut(s) 819, 2363
PdmI GAANNNNTTC 1 cut(s) 1612
PfeI GAWTC 6 cut(s) 274, 393, 1540, 1926, 2131, 2371
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 5 cut(s) 59, 1059, 1062, 1121, 1558
PleI GAGTC 5 cut(s) 148, 602, 1651, 2299, 2432
PpsI GAGTC 5 cut(s) 148, 602, 1651, 2299, 2432
Ppu21I YACGTR 2 cut(s) 434, 2033
PpuMI RGGWCCY 3 cut(s) 25, 230, 1337
PscI ACATGT 2 cut(s) 627, 729
PshAI GACNNNNGTC 1 cut(s) 1859
PshBI ATTAAT 1 cut(s) 774
PsiI TTATAA 1 cut(s) 1314
Psp124BI GAGCTC 1 cut(s) 1008
Psp5II RGGWCCY 3 cut(s) 25, 230, 1337
Psp6I CCWGG 4 cut(s) 388, 1706, 1865, 1921
PspFI CCCAGC 1 cut(s) 2404
PspGI CCWGG 4 cut(s) 388, 1706, 1865, 1921
PspN4I GGNNCC 7 cut(s) 164, 387, 480, 529, 1401, 2047, 2469
PspPPI RGGWCCY 3 cut(s) 25, 230, 1337
PspXI VCTCGAGB 1 cut(s) 2288
PstNI CAGNNNCTG 1 cut(s) 1060
PsuI RGATCY 5 cut(s) 468, 554, 2119, 2400, 2560
PvuII CAGCTG 3 cut(s) 1060, 2341, 2408
RsaI GTAC 6 cut(s) 480, 783, 797, 864, 1920, 2413
RsaNI GTAC 6 cut(s) 479, 782, 796, 863, 1919, 2412
RseI CAYNNNNRTG 1 cut(s) 1571
SacI GAGCTC 1 cut(s) 1008
SalI GTCGAC 1 cut(s) 1981
SatI GCNGC 5 cut(s) 58, 1058, 1061, 1120, 1557
SchI GAGTC 5 cut(s) 148, 602, 1652, 2300, 2432
ScrFI CCNGG 5 cut(s) 390, 855, 1708, 1867, 1923
SduI GDGCHC 2 cut(s) 1008, 1568
SfaNI GCATC 1 cut(s) 644
Sfr274I CTCGAG 1 cut(s) 2288
SinI GGWCC 8 cut(s) 25, 230, 308, 740, 1049, 1231, 1337, 1812
SlaI CTCGAG 1 cut(s) 2288
SmiMI CAYNNNNRTG 1 cut(s) 1571
SmlI CTYRAG 5 cut(s) 52, 424, 1201, 1394, 2288
SmoI CTYRAG 5 cut(s) 52, 424, 1201, 1394, 2288
SpeI ACTAGT 1 cut(s) 1846
SsiI CCGC 6 cut(s) 1119, 1810, 2063, 2322, 2474, 2507
SspMI CTAG 8 cut(s) 641, 918, 1436, 1464, 1658, 1703, 1847, 1886
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 5 cut(s) 388, 853, 1706, 1865, 1921
StyI CCWWGG 4 cut(s) 1320, 1694, 2190, 2295
TaaI ACNGT 6 cut(s) 131, 349, 1049, 1640, 1987, 2003
TaiI ACGT 5 cut(s) 141, 436, 912, 1587, 2035
TauI GCSGC 1 cut(s) 1122
TfiI GAWTC 6 cut(s) 274, 393, 1540, 1926, 2131, 2371
TscAI CASTG 7 cut(s) 164, 189, 670, 764, 1036, 1553, 2182
TseFI GTSAC 5 cut(s) 3, 1861, 2304, 2502, 2608
TseI GCWGC 4 cut(s) 57, 1057, 1060, 1556
Tsp45I GTSAC 5 cut(s) 3, 1861, 2304, 2502, 2608
TspDTI ATGAA 5 cut(s) 512, 1128, 1333, 1370, 1967
TspGWI ACGGA 6 cut(s) 119, 259, 378, 813, 2031, 2128
TspRI CASTG 7 cut(s) 164, 189, 670, 764, 1036, 1553, 2182
Vha464I CTTAAG 1 cut(s) 1394
VpaK11BI GGWCC 8 cut(s) 25, 230, 308, 740, 1049, 1231, 1337, 1812
VspI ATTAAT 1 cut(s) 774
XapI RAATTY 7 cut(s) 320, 539, 899, 1248, 1625, 2418, 2536
XbaI TCTAGA 2 cut(s) 1435, 1657
XceI RCATGY 3 cut(s) 631, 733, 2281
XhoI CTCGAG 1 cut(s) 2288
XmiI GTMKAC 1 cut(s) 1982
XmnI GAANNNNTTC 1 cut(s) 1612
XspI CTAG 8 cut(s) 641, 918, 1436, 1464, 1658, 1703, 1847, 1886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.