MD04G1159700.v1.1

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000047
Physical Location & Seq
Reverse (-)
24780266 .. 24783380
3115 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1159700.v1.1.491

Sequence Viewer

Length: 2994 bp
ATGAAAACTTTACAATCTTTTGTCCTCCTATTCTTCTTCACTATCTGTCATAATGTCGCAACTGGAGTCTACAGCCAGTGTCTCAAAGACCAGCAACTGTCATTGCTCCATTTGAAGAAAAACCTCACGTTTCATGATGATGGTTCTCCGGTTTCTTCCAAGTTTGTATCGTGGGATTCAAGTACAGACTGTTGTTCTTGGGTCGGTGTTACTTGCAGTAGCAACGGGCGTGTTGTTGGTCTGGACATTAGCTGCCAGCACATCTCGGGTGGCATTGACAGCTCAAGCAGTCTCTTCGATCTTCAGCATCTTCAAAGCCTCAACTTGGCCGATAACACTTTTGTCGAAGGCTTTTGCATTCCATCTGCAATTGGAAAGCTGACAAACTTGAGGTATCTAAATTTATCAAATGATTGTGTCCGGAAAATTCCCGTTGAGATTTCACACTTGACAAGGTTGGAGGTCCTTGATATTTCTCAAAGTTACTATAACTGGGCCAGCAAGCCACTTGAAAGCCCGAAGTTCAGCATGCTCTTTCAGAACCTCACAGAGCTTACAGAGCTTCATCTTGACGGTGCAGACCTATCAGCAGAGGGGAGTCATTGGTGCCAAGCGATATCATCTTCGCTGCCAAACCTAAGGGTGTTGAGCTTGTCGCAAACTACTATTTCAGGTCCTATCGATCAATCCCTCACTAAGCTTCAGTCTCTATCCGTGATTCAATTGGGTGGTTTTCGCAACAATATCTCCGGTCCGATTCCAGGATTCTTTGCCAAGTTTTCAAACCTGACAGTGTTGAACTTGGACGAAAACAATATCTCTGCTCCGGTTCCAGGATTCTTTGCCAATTTTTCAAAGTTGACTACCTTGAGTCTACGTGACTGTGGGTTACGTGGAACATTTCCGAAGCAGATCTTTCAGGTACCTACTCTACAAACTCTTGACCTTTCCTCTAATACGGAACTTCATGGTTCCTTGCCAGAATTTCCCAAGAATGGATCTCTTCGATCCTTGATTTTAAGCGGGACAAGCTTTTCAGGGTTATTGCACGACTCTATTGGCAACCTCAACATGTTGTCAACACTAGACCTTTCCGGATGCAATTTCACTGGATCAATCCCAAAGTCAATCGGAAACCTAACGAAATTGGTTAATTTACTCCTGTCATCAAACATGTTTAATGGTCCAATTAGTTCTATTCACTGGGAAAACCTTATTAATCTGGTAAATCTCTGTTTGTACGACAATCAACTGGTGGGGAGCATTCCGTCGTCTCTGTTTTCTCTTCCCTTGTTGCCGTACTTAGTACTTTCCAATAATAATTTCTCCGGGCAACTCCTTGAAATTTTTAACGTCTCTTCCAGTTTAGTTGCTTTAATTGATTTGAGTTTCAATAATTTGGAAGGACCAGTACCCGTGTCTATCTTTAATTTTCGAGGGCTTGAAACCCTCACTCTTTCTTCAAACAATTTCAGTGCCTTTCCTTTTAATGGTCCTCATCAGCTGCCAAATCTGGCGGAGATTGATCTTTCGCACAATAGCTTGCTGGTTTTATACAATGGCAGCAATTCCTCATACTCTTCATTTCCTCAAATTGTTTATTTCAATTTAGTTTCTAACAAGTTGAGAACATTCCCAGTTTTCTTGAGAAATCAAACCTATTTAACAGAGTTGGACCTTTCGAACAACCAAATTCAAGGCCAGCTACCCAATTGGATATGGAAGCTCGATTCTCTTGATTACCTAAATGTTTCTAATAATGCCTTGGAAAGTCTCGAAGGTCCTTTCATCAACTCCACATCTCATGTGTCTGAGCTTGACCTTCATTCAAACCAGCTTAAGGGGCCAATTTCAATTGTCCCACCACATGCCGAATATCTGGGTTACTCAAACAATCATTTCAGTTCTAGTATTCCAGTATCAATATGCAACGCAAGTGGTCTTCGCACTCTTGATTTGTCCAGTAATTCTCTGAGTGGTGAGATTCCCCAGTGCTTGGCTGCAATGAGCACACTCATGATACTTAATGTCAGGAAAAACAACATTACTGGAATGATTTCTAATCTTGAATTTCCTGAGTCATTAGAAGCTCTAGACCTCAGCCAAAATCAGATTGAAGGTCAATTTCCAAAGTCTCTAGCCAGGTGCACAAGTTTAATATTTTTAAACCTTGCAGAGAATCATATAACAGACACCTTCCCATGCTTGTTGAAGAATATCTCCACCTTGATGGTTCTTGCTTTGAGGTCCAACAATTTCTATGGAGGCATTGGATGTCCAGTAGTGAAGACCCATGCCGCTTGGCCGGTTCTTCAAATCGTAGACTTAGCTTACAATAATTTCAATGGTGAAGTACCAGGATTCTCTCTGACAACATGGCAAGCAATGAAGGATAACACAGATATTGGTTTCCCGTCGACAGTCAATGTTTCTAGAAACCCTTATAAAAGAAGGGAATATTCTTATGGGTTTGTTACATCCCCTTTTAACAAAGCGGTTGTAGTAATTTCTTATCAGCCTACTATTTCTTATGAGCCTGCTATGACGATTACAAGCAAAGGTTTAAAGTGTGATCTGGCAAAGATTCTTACCATCTTGACTTTGATTGACTTCTCATGCAACAATTTCAGTGGGCCAATACCCAAGGAAATGGGAGATTTGAAATCTTTATATTTTCTCAACTTGTCAAGTAACGCTTTCACAGGTGAAATCCCATCGTCATTTGGTAACATGCGACAACTCGAGTCCTTGGACCTGTCACAGAACAAGCTGAGCGGGCAAATCCCAGAACAACTGGCAAAGCTTAATTTCCTTGCAGTTCTGAATCTCTCGAATAATCAACTTGTCGGCAAGATCCCAGCTGGTACTCAAATTTCAACATTTCCAAGAGACTCATTTACAGGGAACAAAGGATTATGGGGGCCTCCGCTGACGATGGATAATAAAGCAGGACTTTGCCGTTGGGTCACTTGTGTTCTTCAAGAGATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

998

Amino Acids

109.46

Weight (kDa)

5.71

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 73 1.6e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 88 - 162 3e-09 Leucine-rich repeat region
LRR_8 PF13855 247 - 297 6.5e-06 Leucine rich repeat
LRR_14 PF23598 310 - 510 9e-09 Leucine-rich repeat region
LRR_8 PF13855 535 - 589 2e-06 Leucine rich repeat
LRR_14 PF23598 625 - 733 1.4e-06 Leucine-rich repeat region
LRR_8 PF13855 647 - 705 4.7e-06 Leucine rich repeat
LRR_8 PF13855 671 - 729 4.2e-06 Leucine rich repeat
LRR_14 PF23598 878 - 945 3.6e-06 Leucine-rich repeat region
LRR_8 PF13855 905 - 948 1.9e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2445
Acc65I GGTACC 1 cut(s) 922
AccB1I GGYRCC 2 cut(s) 606, 922
AccB7I CCANNNNNTGG 1 cut(s) 1996
AccBSI CCGCTC 1 cut(s) 2775
AccI GTMKAC 4 cut(s) 69, 874, 2322, 2417
AccIII TCCGGA 2 cut(s) 420, 1094
AciI CCGC 6 cut(s) 1023, 1517, 2298, 2495, 2775, 2927
AclWI GGATC 4 cut(s) 1002, 1006, 1120, 2848
AcoI YGGCCR 2 cut(s) 327, 2303
AcsI RAATTY 7 cut(s) 400, 426, 983, 1344, 1692, 2069, 2871
AcuI CTGAAG 2 cut(s) 287, 686
AfaI GTAC 8 cut(s) 184, 924, 1241, 1301, 1308, 1413, 2355, 2866
AfiI CCNNNNNNNGG 7 cut(s) 325, 761, 833, 995, 1490, 1840, 1996
AflII CTTAAG 1 cut(s) 1838
AflIII ACRYGT 2 cut(s) 1071, 1173
AjnI CCWGG 4 cut(s) 760, 832, 2141, 2356
AjuI GAANNNNNNNTTGG 2 cut(s) 1307, 1339
Alw21I GWGCWC 2 cut(s) 2012, 2150
Alw26I GTCTC 8 cut(s) 86, 296, 711, 1278, 1360, 1778, 2139, 2883
Alw44I GTGCAC 1 cut(s) 2146
AlwI GGATC 4 cut(s) 1002, 1006, 1120, 2848
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 2 cut(s) 265, 2741
Aor13HI TCCGGA 2 cut(s) 420, 1094
AoxI GGCC 7 cut(s) 327, 495, 1699, 1844, 2303, 2633, 2921
ApaLI GTGCAC 1 cut(s) 2146
ApeKI GCWGC 5 cut(s) 252, 628, 1504, 1563, 2000
ApoI RAATTY 7 cut(s) 400, 426, 983, 1344, 1692, 2069, 2871
AseI ATTAAT 1 cut(s) 1218
Asp700I GAANNNNTTC 1 cut(s) 2056
Asp718I GGTACC 1 cut(s) 922
AsuC2I CCSGG 1 cut(s) 1330
AsuHPI GGTGA 3 cut(s) 1991, 2360, 2717
AsuII TTCGAA 1 cut(s) 1682
AvaI CYCGRG 2 cut(s) 265, 2741
AxyI CCTNAGG 1 cut(s) 638
BaeGI GKGCMC 1 cut(s) 2150
BanI GGYRCC 2 cut(s) 606, 922
BarI GAAGNNNNNNTAC 2 cut(s) 1395, 1427
BbsI GAAGAC 2 cut(s) 1934, 2294
Bbv12I GWGCWC 2 cut(s) 2012, 2150
BbvCI CCTCAGC 1 cut(s) 2099
BbvI GCAGC 5 cut(s) 239, 615, 1491, 1575, 1987
BccI CCATC 7 cut(s) 134, 370, 2224, 2600, 2722, 2929, 2980
BceAI ACGGC 2 cut(s) 1282, 2943
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 4 cut(s) 762, 834, 2143, 2358
BcnI CCSGG 1 cut(s) 1330
BcoDI GTCTC 8 cut(s) 86, 296, 711, 1278, 1360, 1778, 2139, 2883
BfaI CTAG 5 cut(s) 1085, 1908, 2093, 2138, 2433
BfmI CTRYAG 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 1838
BglII AGATCT 1 cut(s) 912
BisI GCNGC 6 cut(s) 253, 629, 1505, 1564, 2001, 2298
BlpI GCTNAGC 1 cut(s) 2771
BlsI GCNGC 6 cut(s) 254, 630, 1506, 1565, 2002, 2299
BmcAI AGTACT 1 cut(s) 1308
Bme1390I CCNGG 5 cut(s) 762, 834, 1330, 2143, 2358
BmeT110I CYCGRG 2 cut(s) 265, 2741
BmiI GGNNCC 6 cut(s) 608, 831, 924, 973, 1845, 2922
BmrFI CCNGG 5 cut(s) 762, 834, 1330, 2143, 2358
BmrI ACTGGG 4 cut(s) 502, 1213, 1631, 1984
BmsI GCATC 2 cut(s) 316, 1088
BmuI ACTGGG 4 cut(s) 502, 1213, 1631, 1984
BpiI GAAGAC 2 cut(s) 1934, 2294
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 2099
Bpu1102I GCTNAGC 1 cut(s) 2771
Bpu14I TTCGAA 1 cut(s) 1682
BpuEI CTTGAG 4 cut(s) 268, 409, 889, 1666
BpuMI CCSGG 1 cut(s) 1330
Bsa29I ATCGAT 1 cut(s) 681
BsaAI YACGTR 2 cut(s) 878, 893
BsaJI CCNNGG 3 cut(s) 1764, 2643, 2748
BsaWI WCCGGW 5 cut(s) 148, 420, 749, 826, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 7 cut(s) 325, 761, 833, 995, 1490, 1840, 1996
Bse118I RCCGGY 1 cut(s) 2305
Bse21I CCTNAGG 1 cut(s) 638
Bse3DI GCAATG 3 cut(s) 101, 2010, 2391
BseAI TCCGGA 2 cut(s) 420, 1094
BseBI CCWGG 4 cut(s) 762, 834, 2143, 2358
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 3 cut(s) 1764, 2643, 2748
BseGI GGATG 3 cut(s) 1103, 2279, 2477
BseLI CCNNNNNNNGG 7 cut(s) 325, 761, 833, 995, 1490, 1840, 1996
BseMI GCAATG 3 cut(s) 101, 2010, 2391
BseMII CTCAG 5 cut(s) 1803, 1964, 2067, 2113, 2762
BseSI GKGCMC 1 cut(s) 2150
BseXI GCAGC 5 cut(s) 239, 615, 1491, 1575, 1987
BseYI CCCAGC 1 cut(s) 2857
BsgI GTGCAG 1 cut(s) 597
BshFI GGCC 7 cut(s) 329, 497, 1701, 1846, 2305, 2635, 2923
BshNI GGYRCC 2 cut(s) 606, 922
BshVI ATCGAT 1 cut(s) 681
BsiHKAI GWGCWC 2 cut(s) 2012, 2150
BsiHKCI CYCGRG 2 cut(s) 265, 2741
BsiSI CCGG 7 cut(s) 149, 421, 750, 827, 1095, 1329, 2306
BslFI GGGAC 2 cut(s) 1039, 1844
BslI CCNNNNNNNGG 7 cut(s) 325, 761, 833, 995, 1490, 1840, 1996
BsmAI GTCTC 8 cut(s) 86, 296, 711, 1278, 1360, 1778, 2139, 2883
BsmBI CGTCTC 2 cut(s) 1278, 1360
BsmFI GGGAC 2 cut(s) 1039, 1844
BsmI GAATGC 2 cut(s) 357, 1263
BsnI GGCC 7 cut(s) 329, 497, 1701, 1846, 2305, 2635, 2923
BsoBI CYCGRG 2 cut(s) 265, 2741
Bsp119I TTCGAA 1 cut(s) 1682
Bsp1286I GDGCHC 2 cut(s) 2012, 2150
Bsp13I TCCGGA 2 cut(s) 420, 1094
Bsp143I GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
Bsp1720I GCTNAGC 1 cut(s) 2771
BspACI CCGC 6 cut(s) 1023, 1517, 2298, 2495, 2775, 2927
BspANI GGCC 7 cut(s) 329, 497, 1701, 1846, 2305, 2635, 2923
BspCNI CTCAG 5 cut(s) 1804, 1965, 2068, 2112, 2763
BspDI ATCGAT 1 cut(s) 681
BspEI TCCGGA 2 cut(s) 420, 1094
BspHI TCATGA 2 cut(s) 133, 2016
BspLI GGNNCC 6 cut(s) 608, 831, 924, 973, 1845, 2922
BspPI GGATC 4 cut(s) 1002, 1006, 1120, 2848
BspT104I TTCGAA 1 cut(s) 1682
BspT107I GGYRCC 2 cut(s) 606, 922
BspTI CTTAAG 1 cut(s) 1838
BsrBI CCGCTC 1 cut(s) 2775
BsrDI GCAATG 3 cut(s) 101, 2010, 2391
BsrFI RCCGGY 1 cut(s) 2305
BssAI RCCGGY 1 cut(s) 2305
BssECI CCNNGG 3 cut(s) 1764, 2643, 2748
BssMI GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
BssT1I CCWWGG 3 cut(s) 1764, 2643, 2748
Bst2UI CCWGG 4 cut(s) 762, 834, 2143, 2358
Bst4CI ACNGT 6 cut(s) 99, 191, 575, 793, 884, 2422
Bst6I CTCTTC 5 cut(s) 299, 1008, 1290, 1363, 1585
BstAFI CTTAAG 1 cut(s) 1838
BstBAI YACGTR 2 cut(s) 878, 893
BstBI TTCGAA 1 cut(s) 1682
BstC8I GCNNGC 9 cut(s) 257, 499, 503, 530, 1544, 1703, 2382, 2538, 2777
BstDEI CTNAG 9 cut(s) 638, 696, 1303, 1812, 1973, 2076, 2099, 2326, 2771
BstF5I GGATG 3 cut(s) 1103, 2279, 2477
BstKTI GATC 9 cut(s) 301, 685, 915, 1001, 1010, 1115, 1528, 2575, 2856
BstMAI GTCTC 8 cut(s) 86, 296, 711, 1278, 1360, 1778, 2139, 2883
BstMBI GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
BstMWI GCNNNNNNNGC 5 cut(s) 279, 559, 1029, 1843, 2776
BstNI CCWGG 4 cut(s) 762, 834, 2143, 2358
BstNSI RCATGY 5 cut(s) 532, 1075, 1177, 1871, 2734
BstSCI CCNGG 5 cut(s) 760, 832, 1328, 2141, 2356
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 2150
BstV1I GCAGC 5 cut(s) 239, 615, 1491, 1575, 1987
BstV2I GAAGAC 2 cut(s) 1934, 2294
BstX2I RGATCY 3 cut(s) 912, 998, 2853
BstXI CCANNNNNNTGG 2 cut(s) 2230, 2650
BstYI RGATCY 3 cut(s) 912, 998, 2853
Bsu15I ATCGAT 1 cut(s) 681
Bsu36I CCTNAGG 1 cut(s) 638
BsuRI GGCC 7 cut(s) 329, 497, 1701, 1846, 2305, 2635, 2923
BsuTUI ATCGAT 1 cut(s) 681
BtsCI GGATG 3 cut(s) 1103, 2279, 2477
BtsIMutI CAGTG 7 cut(s) 83, 798, 1107, 1201, 1480, 1997, 2635
Cac8I GCNNGC 9 cut(s) 257, 499, 503, 530, 1544, 1703, 2382, 2538, 2777
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 2 cut(s) 133, 2016
Cfr10I RCCGGY 1 cut(s) 2305
ClaI ATCGAT 1 cut(s) 681
CpoI CGGWCCG 1 cut(s) 752
Csp6I GTAC 8 cut(s) 183, 923, 1240, 1300, 1307, 1412, 2354, 2865
CspCI CAANNNNNGTGG 4 cut(s) 1918, 1953, 2611, 2646
CspI CGGWCCG 1 cut(s) 752
CviQI GTAC 8 cut(s) 183, 923, 1240, 1300, 1307, 1412, 2354, 2865
DdeI CTNAG 9 cut(s) 638, 696, 1303, 1812, 1973, 2076, 2099, 2326, 2771
DpnI GATC 9 cut(s) 300, 684, 914, 1000, 1009, 1114, 1527, 2574, 2855
DpnII GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
DraI TTTAAA 2 cut(s) 2166, 2565
EaeI YGGCCR 2 cut(s) 327, 2303
Eam1104I CTCTTC 5 cut(s) 299, 1008, 1290, 1363, 1585
EarI CTCTTC 5 cut(s) 299, 1008, 1290, 1363, 1585
EciI GGCGGA 1 cut(s) 1532
Eco130I CCWWGG 3 cut(s) 1764, 2643, 2748
Eco32I GATATC 1 cut(s) 618
Eco57I CTGAAG 2 cut(s) 287, 686
Eco81I CCTNAGG 1 cut(s) 638
Eco88I CYCGRG 2 cut(s) 265, 2741
EcoO109I RGGNCCY 4 cut(s) 463, 674, 1781, 2921
EcoRII CCWGG 4 cut(s) 760, 832, 2141, 2356
EcoRV GATATC 1 cut(s) 618
EcoT14I CCWWGG 3 cut(s) 1764, 2643, 2748
ErhI CCWWGG 3 cut(s) 1764, 2643, 2748
Esp3I CGTCTC 2 cut(s) 1278, 1360
FalI AAGNNNNNCTT 6 cut(s) 899, 931, 2680, 2712, 2937, 2969
FaqI GGGAC 2 cut(s) 1039, 1844
FauI CCCGC 2 cut(s) 1016, 2768
FblI GTMKAC 4 cut(s) 69, 874, 2322, 2417
Fnu4HI GCNGC 6 cut(s) 253, 629, 1505, 1564, 2001, 2298
FokI GGATG 3 cut(s) 1110, 2286, 2464
Fsp4HI GCNGC 6 cut(s) 253, 629, 1505, 1564, 2001, 2298
FspBI CTAG 5 cut(s) 1085, 1908, 2093, 2138, 2433
GluI GCNGC 6 cut(s) 253, 629, 1505, 1564, 2001, 2298
GsaI CCCAGC 1 cut(s) 2861
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 7 cut(s) 329, 497, 1701, 1846, 2305, 2635, 2923
HapII CCGG 7 cut(s) 149, 421, 750, 827, 1095, 1329, 2306
HincII GTYRAC 3 cut(s) 861, 1080, 2418
HindII GTYRAC 3 cut(s) 861, 1080, 2418
HindIII AAGCTT 3 cut(s) 698, 1030, 2801
HpaII CCGG 7 cut(s) 149, 421, 750, 827, 1095, 1329, 2306
HphI GGTGA 3 cut(s) 1991, 2360, 2717
Hpy166II GTNNAC 7 cut(s) 70, 861, 875, 1080, 2148, 2323, 2418
Hpy188I TCNGA 9 cut(s) 540, 756, 906, 1133, 1813, 1974, 2112, 2370, 2823
Hpy8I GTNNAC 7 cut(s) 70, 861, 875, 1080, 2148, 2323, 2418
Hpy99I CGWCG 2 cut(s) 1273, 2419
HpyAV CCTTC 8 cut(s) 341, 1397, 1772, 1832, 2111, 2206, 2383, 2445
HpyCH4III ACNGT 6 cut(s) 99, 191, 575, 793, 884, 2422
HpyCH4IV ACGT 4 cut(s) 128, 877, 892, 1353
HpyF10VI GCNNNNNNNGC 5 cut(s) 279, 559, 1029, 1843, 2776
HpyF3I CTNAG 9 cut(s) 638, 696, 1303, 1812, 1973, 2076, 2099, 2326, 2771
HpySE526I ACGT 4 cut(s) 128, 877, 892, 1353
Kpn2I TCCGGA 2 cut(s) 420, 1094
KpnI GGTACC 1 cut(s) 926
Kzo9I GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
LmnI GCTCC 3 cut(s) 111, 829, 1260
Lsp1109I GCAGC 5 cut(s) 239, 615, 1491, 1575, 1987
LweI GCATC 2 cut(s) 316, 1088
MaeI CTAG 5 cut(s) 1085, 1908, 2093, 2138, 2433
MaeII ACGT 4 cut(s) 128, 877, 892, 1353
MalI GATC 9 cut(s) 300, 684, 914, 1000, 1009, 1114, 1527, 2574, 2855
MbiI CCGCTC 1 cut(s) 2775
MboI GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
MfeI CAATTG 4 cut(s) 369, 722, 1711, 1854
MflI RGATCY 3 cut(s) 912, 998, 2853
MhlI GDGCHC 2 cut(s) 2012, 2150
MlyI GAGTC 7 cut(s) 75, 607, 880, 1046, 2087, 2753, 2885
MmeI TCCRAC 3 cut(s) 438, 1653, 2274
MroI TCCGGA 2 cut(s) 420, 1094
MroXI GAANNNNTTC 1 cut(s) 2056
MslI CAYNNNNRTG 3 cut(s) 138, 2015, 2228
MspA1I CMGCKG 3 cut(s) 1504, 2861, 2929
MspCI CTTAAG 1 cut(s) 1838
MspI CCGG 7 cut(s) 149, 421, 750, 827, 1095, 1329, 2306
MspR9I CCNGG 5 cut(s) 762, 834, 1330, 2143, 2358
MunI CAATTG 4 cut(s) 369, 722, 1711, 1854
Mva1269I GAATGC 2 cut(s) 357, 1263
MvaI CCWGG 4 cut(s) 762, 834, 2143, 2358
MwoI GCNNNNNNNGC 5 cut(s) 279, 559, 1029, 1843, 2776
NciI CCSGG 1 cut(s) 1330
NdeII GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
NlaIV GGNNCC 6 cut(s) 608, 831, 924, 973, 1845, 2922
NmuCI GTSAC 3 cut(s) 878, 2757, 2965
NspI RCATGY 5 cut(s) 532, 1075, 1177, 1871, 2734
NspV TTCGAA 1 cut(s) 1682
PaeI GCATGC 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 2741
PagI TCATGA 2 cut(s) 133, 2016
PciI ACATGT 2 cut(s) 1071, 1173
PctI GAATGC 2 cut(s) 357, 1263
PdmI GAANNNNTTC 1 cut(s) 2056
PflMI CCANNNNNTGG 1 cut(s) 1996
PfoI TCCNGGA 2 cut(s) 760, 832
PkrI GCNGC 6 cut(s) 254, 630, 1506, 1565, 2002, 2299
PleI GAGTC 7 cut(s) 74, 606, 879, 1046, 2086, 2752, 2885
PpsI GAGTC 7 cut(s) 74, 606, 879, 1046, 2086, 2752, 2885
Ppu21I YACGTR 2 cut(s) 878, 893
PpuMI RGGWCCY 3 cut(s) 463, 674, 1781
PscI ACATGT 2 cut(s) 1071, 1173
PshBI ATTAAT 1 cut(s) 1218
PsiI TTATAA 1 cut(s) 2445
Psp5II RGGWCCY 3 cut(s) 463, 674, 1781
Psp6I CCWGG 4 cut(s) 760, 832, 2141, 2356
PspFI CCCAGC 1 cut(s) 2857
PspGI CCWGG 4 cut(s) 760, 832, 2141, 2356
PspN4I GGNNCC 6 cut(s) 608, 831, 924, 973, 1845, 2922
PspPPI RGGWCCY 3 cut(s) 463, 674, 1781
PspXI VCTCGAGB 1 cut(s) 2741
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 3 cut(s) 912, 998, 2853
PvuII CAGCTG 2 cut(s) 1504, 2861
RsaI GTAC 8 cut(s) 184, 924, 1241, 1301, 1308, 1413, 2355, 2866
RsaNI GTAC 8 cut(s) 183, 923, 1240, 1300, 1307, 1412, 2354, 2865
RseI CAYNNNNRTG 3 cut(s) 138, 2015, 2228
Rsr2I CGGWCCG 1 cut(s) 752
RsrII CGGWCCG 1 cut(s) 752
SalI GTCGAC 1 cut(s) 2416
SatI GCNGC 6 cut(s) 253, 629, 1505, 1564, 2001, 2298
Sau3AI GATC 9 cut(s) 298, 682, 912, 998, 1007, 1112, 1525, 2572, 2853
ScaI AGTACT 1 cut(s) 1308
SchI GAGTC 7 cut(s) 75, 607, 880, 1046, 2087, 2753, 2885
ScrFI CCNGG 5 cut(s) 762, 834, 1330, 2143, 2358
SduI GDGCHC 2 cut(s) 2012, 2150
SfaNI GCATC 2 cut(s) 316, 1088
SfcI CTRYAG 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 2741
SfuI TTCGAA 1 cut(s) 1682
SlaI CTCGAG 1 cut(s) 2741
SmiMI CAYNNNNRTG 3 cut(s) 138, 2015, 2228
SmlI CTYRAG 6 cut(s) 283, 388, 868, 1645, 1838, 2741
SmoI CTYRAG 6 cut(s) 283, 388, 868, 1645, 1838, 2741
SphI GCATGC 1 cut(s) 532
SsiI CCGC 6 cut(s) 1023, 1517, 2298, 2495, 2775, 2927
SspI AATATT 2 cut(s) 2160, 2459
SspMI CTAG 5 cut(s) 1085, 1908, 2093, 2138, 2433
StyD4I CCNGG 5 cut(s) 760, 832, 1328, 2141, 2356
StyI CCWWGG 3 cut(s) 1764, 2643, 2748
TaaI ACNGT 6 cut(s) 99, 191, 575, 793, 884, 2422
TaiI ACGT 4 cut(s) 131, 880, 895, 1356
TatI WGTACW 2 cut(s) 182, 1306
TauI GCSGC 1 cut(s) 2300
TscAI CASTG 7 cut(s) 83, 798, 1114, 1208, 1480, 1997, 2635
TseFI GTSAC 3 cut(s) 878, 2757, 2965
TseI GCWGC 5 cut(s) 252, 628, 1504, 1563, 2000
Tsp45I GTSAC 3 cut(s) 878, 2757, 2965
TspDTI ATGAA 8 cut(s) 17, 122, 554, 956, 1572, 1777, 1814, 2402
TspGWI ACGGA 3 cut(s) 703, 974, 1257
TspRI CASTG 7 cut(s) 83, 798, 1114, 1208, 1480, 1997, 2635
Van91I CCANNNNNTGG 1 cut(s) 1996
Vha464I CTTAAG 1 cut(s) 1838
VneI GTGCAC 1 cut(s) 2146
VspI ATTAAT 1 cut(s) 1218
XapI RAATTY 7 cut(s) 400, 426, 983, 1344, 1692, 2069, 2871
XbaI TCTAGA 2 cut(s) 2092, 2432
XceI RCATGY 5 cut(s) 532, 1075, 1177, 1871, 2734
XhoI CTCGAG 1 cut(s) 2741
XmiI GTMKAC 4 cut(s) 69, 874, 2322, 2417
XmnI GAANNNNTTC 1 cut(s) 2056
XspI CTAG 5 cut(s) 1085, 1908, 2093, 2138, 2433
ZrmI AGTACT 1 cut(s) 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.