Rroxscaffold_6G00403410

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000047
Physical Location & Seq
Reverse (-)
25877900 .. 25885782
7883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403410.1

Sequence Viewer

Length: 2730 bp
ATGATCCGATATGTGATTCTTGACATTTCAGGAGAAATTGATAACTGGTCTCTCTTTCTGCAACGAAATGCACAGGATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGAAGGCAGAACTCTTGCAGATTATAACATCCAAAAGGTGCTGATTTATGCTGGCAAGCAGCTTGGTCTGCTTGGAGATGACAAAACTGCTAAAGACTACAACATTGAGGTTCACAGCAATTGTATTGTAGAACAGCAACTATCACTACTCCATTTCAAGAAAAGTCTTGTATACGTAATTGATCCTCCTTCCCCCAGGCTTATCACATGGAATTCAAGTACTGATTGCTGCTCTTGGCTCGGTGTAACTTGCAGCACTAATGGGTATGTTGTCGGACTTGACCTCAGCAGCGAGTTTGTTTCATGCAGAATTGACAATTCCAGCAGTCTCTTCCAACTTCAACATCTTGAGAGCCTCAATTTGGCCAATAACGTCTTCAATGGCTCTCAAATTCCATCTGCAATCGGAGAGCTTACAAATCTGAGGTATCTAAATTTAGCCCATGGTTTCTATTCCGGGCAAATTCCCATTGAGATTTCACGCTTGGCAAGGTTGGTAAGTCTTGATCTCTCTAGAAATAGCTATGATGGGGTTTCGTTAAAACTTGAAAACCCAAATTTAAGCATGCTAATTCAGAACCTCACAGAGCTTACAGAGTTATATCTTGATTCAGTAGAGATATCAGGACAGGGGAGTGACTGGTGCGAAGCCATATCATCTTCACTGCCAAATCTGAGGGTGTTGAGCTTGTCTTTTTGTGGTCTTTCAGGCCCTATGTGTGACTCCCTTGCAAAGCTTCAATCTCTGTATGAGATTGACTTGGGAAATAACTCGTTCTATGCTCCGGTTCCAAGATCCTTTGCCAATTTTTCAAACTTGACTTCCTTGAGTCTCTCTGGTTGTAACTTGCTGGGAATATTTCCCAAAGAGGTCTTTCTTATTCCTTCTCTACAAACCATTGATATTTCTAGTAATCTGGAACTTGGTGGTTCCTTTCCAGAGTTTCCAAAGAATAGGACAAAACTTTCAACCATCTCTCTTTCACATTGCAATTTCACTGGATCCCTCCCCATGTCAATTGAGAACCTTACCCAATTGGTTGACCTGGACGTGTCATGGAACAGGTTCAATAGTCCTATCAGTCCTATTCACTGGGAAGCCCTTGTTAATCTGGAAAGCCTTGACTTCAGCAACAATCTACTCTATGGGAGTATTCCATCATCTATTGTTTCTCCTCCCTTGCTGGTTGCATTAGCACTTTCTAATAATCATTTCTCTGGTCAAGTCCCTGAATTTTTCAATACCTCTTCACAGTTACTTCGGAACCTTCTTTTGGGAAACAACAATTTGGAAGGAGAAATACCAACATCTATTTTTAATCTTAAAGGGCTTATGTATCTTGATCTTGCTTCAAACAACTTCAGTGGCTTCCCTTTCGGTGGCCCTCGGCAGCCTAGAACTCTTTCATTTCTTGATCTTTCCCACAATAGCTTGTTGTTTGATTATAATGATTCGGGGTATCCACTCCTCATATGCCTTCCTTCGATTGGCCACTTGGGTTTAGCTTCTAACAAGTTGAGAACATTCCCGGACTTCTTGAGAAATCAGTCCACATTAAATTACTTGGACCTTTCAAACAACCAAATTCAAGGCCGGATACCCAATTGGATTTGGAGGCTCAATTCTCTTCAAGAACTGAATCTTTCTTGTAACTCCTTGGAAACTCTAGAAGCTCCTTTACCTAAGGCTAATTCTTCTACTGTTGTGACGTCACTTGATCTTCATTCAAACCAGCTTCGGGGACAAATCCCATTGTTCCTACCATTTGCCCATTTTCCGGATTACTCGAGAAATAATTTTAGCTCTAGTCTACCGACCGACATTGGCGCTTTTATCTCTCAAACTAATTTCCTCTCTCTGTCAAGCAATAACTTGCATGGAACCATTCCAAGATCAATTTGCAATACAAGCTGGTATGGTTCTAGATCTGATGTCCCAAGACCAACAAGCATGTGGCTCGTGCCGCAAATCATAGATTTATCACACAACCATTTGAATGGTGAAATACCGGCAACGTCTTTCGCAACATGGCAGAAAATGAAGGCTAATGAAGATGATGGTAATCCGGTATTTTCGTACACTCCCCGTACACAACGAGAGACTATTGGGATGGATGTTTATTACGGAGATACAATAACAACCATCATCAAAGGTTTGCGGTTGGATCCGATAAAGATTCTAACTATCTTCACCTTGATTGATTTCTCTTCCAACAATTTTACCGGGTCAATACCCAAGGAAATTGGAGAGCTGAAAGCATTGTATGCCCTCAACTTATCCGGTAATGCTTTCACAGGCGAAATCCCATCATCCTTTGGTAACATGAGTAGCATAGAGTCCTTAGACCTCTCACGGAACCACTTGAGCGGCCAAATTCCACCGCAGCTTTCAACTCTCACTTTCCTTTCGCACTTGAATGTCTCATATAATCAACCGACGGGAAGGATCCCAACCAGCACTCGATTTTCAACATTTCCAAATACCTCATTCGAGGGTAACAAAGGATTATGGGGCCCTCCTCGACATGGGATACAACAATCGTATTGCCACCTCCAACTTTTAATGGAAGCTCAAGTAATCCGAATTCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

909

Amino Acids

100.91

Weight (kDa)

5.49

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 25 - 57 2.1e-10 Ubiquitin family
LRRNT_2 PF08263 90 - 130 2.4e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 150 - 347 6.3e-12 Leucine-rich repeat region
LRR_14 PF23598 264 - 462 2.2e-07 Leucine-rich repeat region
LRR_8 PF13855 268 - 328 4.1e-06 Leucine rich repeat
LRR_8 PF13855 465 - 523 1.5e-06 Leucine rich repeat
LRR_8 PF13855 543 - 598 2.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 159, 1581
AatII GACGTC 1 cut(s) 1847
AccBSI CCGCTC 1 cut(s) 2502
AccI GTMKAC 2 cut(s) 306, 1945
AccIII TCCGGA 1 cut(s) 1912
AciI CCGC 4 cut(s) 2099, 2293, 2502, 2516
AclWI GGATC 8 cut(s) 311, 924, 1131, 1144, 2294, 2307, 2575, 2588
AcoI YGGCCR 3 cut(s) 498, 1624, 2503
AcsI RAATTY 9 cut(s) 346, 525, 568, 597, 691, 1367, 1719, 2508, 2718
AcuI CTGAAG 2 cut(s) 1246, 1480
AcyI GRCGYC 1 cut(s) 1844
AfaI GTAC 3 cut(s) 355, 2213, 2224
AfiI CCNNNNNNNGG 7 cut(s) 496, 1408, 1514, 1622, 1873, 1912, 2660
AflIII ACRYGT 1 cut(s) 1185
AjiI CACGTC 1 cut(s) 1186
AjnI CCWGG 2 cut(s) 329, 1179
AjuI GAANNNNNNNTTGG 4 cut(s) 494, 526, 1391, 1423
Alw26I GTCTC 5 cut(s) 54, 467, 971, 2228, 2560
AlwI GGATC 8 cut(s) 311, 924, 1131, 1144, 2294, 2307, 2575, 2588
Ama87I CYCGRG 1 cut(s) 1921
Aor13HI TCCGGA 1 cut(s) 1912
AoxI GGCC 7 cut(s) 498, 844, 1516, 1624, 1726, 2503, 2647
ApaI GGGCCC 1 cut(s) 2651
ApeKI GCWGC 6 cut(s) 193, 363, 387, 423, 1525, 2518
ApoI RAATTY 9 cut(s) 346, 525, 568, 597, 691, 1367, 1719, 2508, 2718
Asp700I GAANNNNTTC 2 cut(s) 1199, 1537
AspLEI GCGC 1 cut(s) 1964
AspS9I GGNCC 5 cut(s) 845, 1517, 1702, 2647, 2648
AsuC2I CCSGG 3 cut(s) 592, 1664, 2359
AsuHPI GGTGA 2 cut(s) 2147, 2317
AvaI CYCGRG 1 cut(s) 1921
AvaII GGWCC 1 cut(s) 1702
AxyI CCTNAGG 1 cut(s) 1818
BaeGI GKGCMC 1 cut(s) 2651
BalI TGGCCA 2 cut(s) 500, 1626
BamHI GGATCC 3 cut(s) 1136, 2299, 2580
BanII GRGCYC 1 cut(s) 2651
BarI GAAGNNNNNNTAC 4 cut(s) 1419, 1451, 1797, 1829
BauI CACGAG 1 cut(s) 2093
BbsI GAAGAC 1 cut(s) 502
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 6 cut(s) 205, 350, 399, 435, 1537, 2530
BccI CCATC 8 cut(s) 538, 656, 1115, 1300, 2186, 2239, 2285, 2449
BcgI CGANNNNNNTGC 2 cut(s) 2074, 2108
BciT130I CCWGG 2 cut(s) 331, 1181
BciVI GTATCC 3 cut(s) 1605, 1725, 2658
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 3 cut(s) 592, 1664, 2359
BcoDI GTCTC 5 cut(s) 54, 467, 971, 2228, 2560
BfaI CTAG 6 cut(s) 648, 1044, 1530, 1802, 1941, 2058
BfoI RGCGCY 1 cut(s) 1965
BfuI GTATCC 3 cut(s) 1605, 1725, 2658
BglII AGATCT 1 cut(s) 2060
BisI GCNGC 8 cut(s) 194, 364, 388, 424, 1526, 2099, 2503, 2519
BlsI GCNGC 8 cut(s) 195, 365, 389, 425, 1527, 2100, 2504, 2520
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 5 cut(s) 331, 592, 1181, 1664, 2359
Bme18I GGWCC 1 cut(s) 1702
BmeT110I CYCGRG 1 cut(s) 1921
BmgBI CACGTC 1 cut(s) 1186
BmgT120I GGNCC 5 cut(s) 845, 1517, 1702, 2647, 2648
BmrFI CCNGG 5 cut(s) 331, 592, 1181, 1664, 2359
BmrI ACTGGG 1 cut(s) 1237
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 1237
BpiI GAAGAC 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 5 cut(s) 503, 982, 1693, 2518, 2691
BpuMI CCSGG 3 cut(s) 592, 1664, 2359
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 2196
BsaHI GRCGYC 1 cut(s) 1844
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 5 cut(s) 329, 577, 1520, 1791, 2370
BsaWI WCCGGW 4 cut(s) 919, 1912, 2200, 2414
Bsc4I CCNNNNNNNGG 7 cut(s) 496, 1408, 1514, 1622, 1873, 1912, 2660
Bse118I RCCGGY 2 cut(s) 119, 2143
Bse1I ACTGG 4 cut(s) 50, 779, 1138, 1232
Bse21I CCTNAGG 1 cut(s) 1818
Bse3DI GCAATG 1 cut(s) 1120
Bse8I GATNNNNATC 1 cut(s) 2196
BseAI TCCGGA 1 cut(s) 1912
BseBI CCWGG 2 cut(s) 331, 1181
BseDI CCNNGG 5 cut(s) 329, 577, 1520, 1791, 2370
BseGI GGATG 5 cut(s) 87, 162, 2250, 2254, 2444
BseJI GATNNNNATC 1 cut(s) 2196
BseLI CCNNNNNNNGG 7 cut(s) 496, 1408, 1514, 1622, 1873, 1912, 2660
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 3 cut(s) 433, 548, 800
BseNI ACTGG 4 cut(s) 50, 779, 1138, 1232
BseRI GAGGAG 3 cut(s) 1299, 1592, 2643
BseSI GKGCMC 1 cut(s) 2651
BseXI GCAGC 6 cut(s) 205, 350, 399, 435, 1537, 2530
BseYI CCCAGC 1 cut(s) 985
Bsh1285I CGRYCG 1 cut(s) 1953
BshFI GGCC 7 cut(s) 500, 846, 1518, 1626, 1728, 2505, 2649
BsiEI CGRYCG 1 cut(s) 1953
BsiHKCI CYCGRG 1 cut(s) 1921
BslFI GGGAC 3 cut(s) 1346, 1890, 2054
BslI CCNNNNNNNGG 7 cut(s) 496, 1408, 1514, 1622, 1873, 1912, 2660
BsmAI GTCTC 5 cut(s) 54, 467, 971, 2228, 2560
BsmFI GGGAC 3 cut(s) 1346, 1890, 2054
BsnI GGCC 7 cut(s) 500, 846, 1518, 1626, 1728, 2505, 2649
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 1921
Bsp120I GGGCCC 1 cut(s) 2647
Bsp1286I GDGCHC 1 cut(s) 2651
Bsp13I TCCGGA 1 cut(s) 1912
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 4 cut(s) 2099, 2293, 2502, 2516
BspANI GGCC 7 cut(s) 500, 846, 1518, 1626, 1728, 2505, 2649
BspCNI CTCAG 3 cut(s) 432, 549, 801
BspEI TCCGGA 1 cut(s) 1912
BspPI GGATC 8 cut(s) 311, 924, 1131, 1144, 2294, 2307, 2575, 2588
BspTNI GGTCTC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 2502
BsrDI GCAATG 1 cut(s) 1120
BsrFI RCCGGY 2 cut(s) 119, 2143
BsrI ACTGG 4 cut(s) 50, 779, 1138, 1232
BssAI RCCGGY 2 cut(s) 119, 2143
BssECI CCNNGG 5 cut(s) 329, 577, 1520, 1791, 2370
BssNAI GTATAC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 1844
BssSI CACGAG 1 cut(s) 2093
BssT1I CCWWGG 3 cut(s) 577, 1791, 2370
Bst1107I GTATAC 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 2093
Bst2UI CCWGG 2 cut(s) 331, 1181
Bst4CI ACNGT 2 cut(s) 1389, 1837
Bst6I CTCTTC 4 cut(s) 470, 1387, 1767, 2347
BstACI GRCGYC 1 cut(s) 1844
BstAPI GCANNNNNTGC 1 cut(s) 2399
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 187, 191, 701
BstDEI CTNAG 5 cut(s) 419, 557, 809, 1818, 2476
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 5 cut(s) 87, 162, 2250, 2254, 2444
BstH2I RGCGCY 1 cut(s) 1965
BstHHI GCGC 1 cut(s) 1964
BstMAI GTCTC 5 cut(s) 54, 467, 971, 2228, 2560
BstMCI CGRYCG 1 cut(s) 1953
BstMWI GCNNNNNNNGC 4 cut(s) 202, 2043, 2098, 2399
BstNI CCWGG 2 cut(s) 331, 1181
BstNSI RCATGY 2 cut(s) 703, 2089
BstSCI CCNGG 5 cut(s) 329, 590, 1179, 1662, 2357
BstSLI GKGCMC 1 cut(s) 2651
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 6 cut(s) 205, 350, 399, 435, 1537, 2530
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 5 cut(s) 929, 1136, 2060, 2299, 2580
BstXI CCANNNNNNTGG 1 cut(s) 2132
BstYI RGATCY 5 cut(s) 929, 1136, 2060, 2299, 2580
BstZ17I GTATAC 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 1818
BsuI GTATCC 3 cut(s) 1605, 1725, 2658
BsuRI GGCC 7 cut(s) 500, 846, 1518, 1626, 1728, 2505, 2649
BtgI CCRYGG 1 cut(s) 577
BtrI CACGTC 1 cut(s) 1186
BtsCI GGATG 5 cut(s) 87, 162, 2250, 2254, 2444
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 4 cut(s) 797, 1131, 1225, 1504
Cac8I GCNNGC 3 cut(s) 187, 191, 701
CfoI GCGC 1 cut(s) 1964
Cfr10I RCCGGY 2 cut(s) 119, 2143
Cfr13I GGNCC 5 cut(s) 845, 1517, 1702, 2647, 2648
Csp6I GTAC 3 cut(s) 354, 2212, 2223
CspCI CAANNNNNGTGG 2 cut(s) 1480, 1515
CviQI GTAC 3 cut(s) 354, 2212, 2223
DdeI CTNAG 5 cut(s) 419, 557, 809, 1818, 2476
EaeI YGGCCR 3 cut(s) 498, 1624, 2503
Eam1104I CTCTTC 4 cut(s) 470, 1387, 1767, 2347
EarI CTCTTC 4 cut(s) 470, 1387, 1767, 2347
Eco105I TACGTA 1 cut(s) 310
Eco130I CCWWGG 3 cut(s) 577, 1791, 2370
Eco24I GRGCYC 1 cut(s) 2651
Eco31I GGTCTC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 756
Eco47I GGWCC 1 cut(s) 1702
Eco57I CTGAAG 2 cut(s) 1246, 1480
Eco81I CCTNAGG 1 cut(s) 1818
Eco88I CYCGRG 1 cut(s) 1921
EcoO109I RGGNCCY 3 cut(s) 845, 2647, 2648
EcoRI GAATTC 2 cut(s) 346, 2718
EcoRII CCWGG 2 cut(s) 329, 1179
EcoRV GATATC 1 cut(s) 756
EcoT14I CCWWGG 3 cut(s) 577, 1791, 2370
EcoT38I GRGCYC 1 cut(s) 2651
ErhI CCWWGG 3 cut(s) 577, 1791, 2370
FaqI GGGAC 3 cut(s) 1346, 1890, 2054
FauNDI CATATG 1 cut(s) 1607
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 2 cut(s) 306, 1945
Fnu4HI GCNGC 8 cut(s) 194, 364, 388, 424, 1526, 2099, 2503, 2519
FokI GGATG 5 cut(s) 74, 149, 2257, 2261, 2431
FriOI GRGCYC 1 cut(s) 2651
Fsp4HI GCNGC 8 cut(s) 194, 364, 388, 424, 1526, 2099, 2503, 2519
FspBI CTAG 6 cut(s) 648, 1044, 1530, 1802, 1941, 2058
GlaI GCGC 1 cut(s) 1963
GluI GCNGC 8 cut(s) 194, 364, 388, 424, 1526, 2099, 2503, 2519
GsaI CCCAGC 1 cut(s) 989
HaeII RGCGCY 1 cut(s) 1965
HaeIII GGCC 7 cut(s) 500, 846, 1518, 1626, 1728, 2505, 2649
HhaI GCGC 1 cut(s) 1964
Hin1I GRCGYC 1 cut(s) 1844
Hin6I GCGC 1 cut(s) 1962
HinP1I GCGC 1 cut(s) 1962
HincII GTYRAC 1 cut(s) 1177
HindII GTYRAC 1 cut(s) 1177
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 8 cut(s) 16, 743, 857, 964, 1586, 1774, 2311, 2471
HphI GGTGA 2 cut(s) 2147, 2317
Hpy166II GTNNAC 7 cut(s) 247, 307, 1177, 1686, 1946, 2214, 2225
Hpy8I GTNNAC 7 cut(s) 247, 307, 1177, 1686, 1946, 2214, 2225
Hpy99I CGWCG 1 cut(s) 2575
HpyCH4III ACNGT 2 cut(s) 1389, 1837
HpyCH4IV ACGT 5 cut(s) 309, 507, 1185, 1844, 2150
HpyF10VI GCNNNNNNNGC 4 cut(s) 202, 2043, 2098, 2399
HpyF3I CTNAG 5 cut(s) 419, 557, 809, 1818, 2476
HpySE526I ACGT 5 cut(s) 309, 507, 1185, 1844, 2150
Hsp92I GRCGYC 1 cut(s) 1844
HspAI GCGC 1 cut(s) 1962
Kpn2I TCCGGA 1 cut(s) 1912
Ksp22I TGATCA 1 cut(s) 97
LmnI GCTCC 2 cut(s) 922, 1813
Lsp1109I GCAGC 6 cut(s) 205, 350, 399, 435, 1537, 2530
LweI GCATC 1 cut(s) 96
MaeI CTAG 6 cut(s) 648, 1044, 1530, 1802, 1941, 2058
MaeII ACGT 5 cut(s) 309, 507, 1185, 1844, 2150
MbiI CCGCTC 1 cut(s) 2502
MfeI CAATTG 5 cut(s) 128, 253, 1152, 1169, 1738
MflI RGATCY 5 cut(s) 929, 1136, 2060, 2299, 2580
MhlI GDGCHC 1 cut(s) 2651
MlsI TGGCCA 2 cut(s) 500, 1626
MluNI TGGCCA 2 cut(s) 500, 1626
MlyI GAGTC 3 cut(s) 851, 973, 2480
MmeI TCCRAC 5 cut(s) 388, 493, 2277, 2370, 2713
Mox20I TGGCCA 2 cut(s) 500, 1626
MroI TCCGGA 1 cut(s) 1912
MroXI GAANNNNTTC 2 cut(s) 1199, 1537
MscI TGGCCA 2 cut(s) 500, 1626
MseI TTAA 7 cut(s) 674, 695, 1242, 1452, 1458, 1691, 2696
MslI CAYNNNNRTG 2 cut(s) 2130, 2550
Msp20I TGGCCA 2 cut(s) 500, 1626
MspR9I CCNGG 5 cut(s) 331, 592, 1181, 1664, 2359
MunI CAATTG 5 cut(s) 128, 253, 1152, 1169, 1738
MvaI CCWGG 2 cut(s) 331, 1181
MwoI GCNNNNNNNGC 4 cut(s) 202, 2043, 2098, 2399
NciI CCSGG 3 cut(s) 592, 1664, 2359
NcoI CCATGG 1 cut(s) 577
NdeI CATATG 1 cut(s) 1607
NmeAIII GCCGAG 1 cut(s) 1501
NmuCI GTSAC 4 cut(s) 770, 854, 1840, 1845
NspI RCATGY 2 cut(s) 703, 2089
PaeI GCATGC 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 1921
PdmI GAANNNNTTC 2 cut(s) 1199, 1537
PfeI GAWTC 5 cut(s) 16, 743, 1586, 1774, 2311
PfoI TCCNGGA 1 cut(s) 1662
PkrI GCNGC 8 cut(s) 195, 365, 389, 425, 1527, 2100, 2504, 2520
PleI GAGTC 3 cut(s) 851, 972, 2479
PpsI GAGTC 3 cut(s) 851, 972, 2479
Ppu21I YACGTR 1 cut(s) 310
PsiI TTATAA 2 cut(s) 159, 1581
Psp6I CCWGG 2 cut(s) 329, 1179
PspFI CCCAGC 1 cut(s) 985
PspGI CCWGG 2 cut(s) 329, 1179
PspOMI GGGCCC 1 cut(s) 2647
PspPI GGNCC 5 cut(s) 845, 1517, 1702, 2647, 2648
PsuI RGATCY 5 cut(s) 929, 1136, 2060, 2299, 2580
RsaI GTAC 3 cut(s) 355, 2213, 2224
RsaNI GTAC 3 cut(s) 354, 2212, 2223
RseI CAYNNNNRTG 2 cut(s) 2130, 2550
SaqAI TTAA 7 cut(s) 674, 695, 1242, 1452, 1458, 1691, 2696
SatI GCNGC 8 cut(s) 194, 364, 388, 424, 1526, 2099, 2503, 2519
Sau96I GGNCC 5 cut(s) 845, 1517, 1702, 2647, 2648
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 3 cut(s) 851, 973, 2480
ScrFI CCNGG 5 cut(s) 331, 592, 1181, 1664, 2359
SduI GDGCHC 1 cut(s) 2651
SfaNI GCATC 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 1921
SinI GGWCC 1 cut(s) 1702
SlaI CTCGAG 1 cut(s) 1921
SmiMI CAYNNNNRTG 2 cut(s) 2130, 2550
SmlI CTYRAG 6 cut(s) 482, 961, 1672, 1921, 2497, 2706
SmoI CTYRAG 6 cut(s) 482, 961, 1672, 1921, 2497, 2706
SnaBI TACGTA 1 cut(s) 310
SphI GCATGC 1 cut(s) 703
SsiI CCGC 4 cut(s) 2099, 2293, 2502, 2516
SspI AATATT 1 cut(s) 993
SspMI CTAG 6 cut(s) 648, 1044, 1530, 1802, 1941, 2058
StyD4I CCNGG 5 cut(s) 329, 590, 1179, 1662, 2357
StyI CCWWGG 3 cut(s) 577, 1791, 2370
TaaI ACNGT 2 cut(s) 1389, 1837
TaiI ACGT 5 cut(s) 312, 510, 1188, 1847, 2153
TaqI TCGA 5 cut(s) 1619, 1922, 2596, 2625, 2656
TaqII GACCGA 1 cut(s) 1967
TatI WGTACW 1 cut(s) 353
TauI GCSGC 2 cut(s) 2101, 2505
TfiI GAWTC 5 cut(s) 16, 743, 1586, 1774, 2311
Tru1I TTAA 7 cut(s) 674, 695, 1242, 1452, 1458, 1691, 2696
Tru9I TTAA 7 cut(s) 674, 695, 1242, 1452, 1458, 1691, 2696
TscAI CASTG 4 cut(s) 804, 1138, 1232, 1504
TseFI GTSAC 4 cut(s) 770, 854, 1840, 1845
TseI GCWGC 6 cut(s) 193, 363, 387, 423, 1525, 2518
Tsp45I GTSAC 4 cut(s) 770, 854, 1840, 1845
TspDTI ATGAA 5 cut(s) 426, 1530, 1847, 2189, 2199
TspGWI ACGGA 2 cut(s) 2274, 2503
TspRI CASTG 4 cut(s) 804, 1138, 1232, 1504
VpaK11BI GGWCC 1 cut(s) 1702
XapI RAATTY 9 cut(s) 346, 525, 568, 597, 691, 1367, 1719, 2508, 2718
XbaI TCTAGA 3 cut(s) 647, 1801, 2057
XceI RCATGY 2 cut(s) 703, 2089
XcmI CCANNNNNNNNNTGG 1 cut(s) 2085
XhoI CTCGAG 1 cut(s) 1921
XmiI GTMKAC 2 cut(s) 306, 1945
XmnI GAANNNNTTC 2 cut(s) 1199, 1537
XspI CTAG 6 cut(s) 648, 1044, 1530, 1802, 1941, 2058
ZraI GACGTC 1 cut(s) 1845
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.