Rw3G009740

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000047
Physical Location & Seq
Reverse (-)
9343803 .. 9364852
21050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009740.1

Sequence Viewer

Length: 3390 bp
ATGCTTTGGTCTCACACAAAAAGAGTTTCAATGACAATTCCTTTGTTCTCATGCCATTTCTTAATACTCATTTACTATGTTTCACTCAGTGTCCTTATACTGGTGGTCTCTGGCCAATGTTCCAGCAATCAGCAGCAATCTTTGTTGCTCCAACTGAAGAACAGCCTGAATTTTGAGCCTGCATTATCCACAAAGCTGGTGAAGTGGAACAATGTCTCTGATTATTGTTCTTGGGAAGGTGTCTCCTGCAAAGGAGGTTGTGTTACCCATCTCGACTTGAGCAGCGAATCGATTTCAGGTGGACTTGATGATTCCAGTGTTCTTTTCAGTCTGCAGTTCATCGAACGCCTGAATTTGGCTTATAATAACTTCAATCATACTCAAATTCCATCCCAGTTCAACAAGCTAGCCAGTTTGAATTATTTGAATCTGTCAAATGCTGGCTTTTCCGGGCAGATTCCCGTTGAGATTTCGCAGTTGACAAGGTTGGTGTTTCTTGATTTATCTACCTTTTACTTTCCCGGAACTCCTGAACTGCAACTTGAGCATCCAGATTTGAATCTGCTTATTGGAAACCTTACGGAGATAATCGAACTTCATCTTGATGGTGTCAACATATCAGCACAGGGAGCTCAGTGGGGTCAAGCAATATCATCTTCACTGCCAAAGCTGAGGGTGTTGAGCTTGTCCAGTTGTAATCTTTTAGGCCCTATTGATTCTTCCTTACTGAAGCTCAACTCACTCTCAATCATTCGCCTGGAGAGTAATGACTTGTCTACTCCAGTTCCAGAGTTCTTGTCAAATTTCACAAATTTGACTACCTTACGCCTCATGAATTCAGGGTTAAATGGTACATTCCCAAAGGAGATCTTCCAGGTACCTACACTGCAGATTATCGACTTGATAGGCAATGAAGAGCTACAAGGTTCGCTGCCAGACTTTCCAAAGAATGGAGCTCTTCAGTCCCTGTTCCTAGCCAGGACAGCTTTTTCAGGGTTATTGCCGGAATCTGTTGGAAACCTCAAGATGTTGTCCAAAGTTGATATTTCGTATTGCAATTTCACGGGACCAATCCCAAAGTCAATGGAAAGCCTTACGGAACTGGTTTATGTGGACATGTCAGCGAACAAGCTTAATGGTTCAGTTCCAGTGTTGAGTATGGCCAAGAATCTGACCAACATATATCTTTCGTACAATGAGCTAACAGGTCAGATTAACTATACTCGCTGGGAAAACCTGATGAATCTGGTGAATCTGGACTTGCGTTTCAATCAACTGAATGGAAGTATTCCACTGTCCCTGTTTTCCCTTCCCTTGTTGCAGAAACTACTACTCTCCAACAATCAATTCTCTGGTAAGTTGCATGAATTTGCCAATATCTCTTCACTGGACACCGTCGATTTGAGTAGCAACAATTTTGAAGGAACGGTACCCATGTCTATCTTTAATCTCCGAGGGCTTAAAATTCTCTCACTTTCTTCCAACAACTTCAGTGGCTCCTTCCCTCTTAACAGTGTGCAACAACTCAAAAATCTTTCCAGTCTTGATCTTTCATACAATAGTTTGTCAATTAGTTACAATAGTACAAATTCCTCAGAGTCATCCTTTCCTAATATTACCACATTAAAATTGGCTTCTGGAGAGTTGAGAACATTTCCTAATTTCTTGAGAGATCAATCCAGATTAAGCTATTTGGACCTTTCACAGAACCAGATTCATGGAGAGATACCCAACTGGATTTGGAAGCTCAATAATCTATTACAACTAAATCTGTCTTGCAACTCCTTTTTGTCTGTGCTTGACCTTCATTCTAACCAGCTTCAGGGACAAGTCCCAATTTTTCCACCATTTGCCAATTATCTGGATTACTCAAAAAATAATTTCACCTCTAGCATACCGGCTGACATTGGGGATTTCCTTAATTACACTGTCTTCTTGTCTCTTTCAAGCAACAGAGTTCAAGGGAGCATTCCAGGATCAATATGCAATGCGTCATATCTTCAGGTTCTTGATCTGTCCAATAATTCTTTAACTGGCATCATTCCCCCATGCTTGACTGCAACAGGCGGAACTCTTGTGGTACTCAATTTAAGGAGAAATAAACTTGCTGGCAGAATTCCTGATAGATTTCCTGGCCATTGTACTTTGAAAACTCTAGACTTCAGTGGAAATCTTCTAGAAGGTCAGTTTCCAAAATCTCTAGCCAATTGCACATTGTTAGAAGTTCTGAACCTTGGAAACAATCAGATTACAGATACATTTCCATGCTTGCTGAAGAGCATCTCCACCTTGCGTATCCTTGTTTTGCGATCTAACAGATTTTATAGACGCATTGGATGTCCCAACACCACTGGTACCTGGCCACGACTTCAAATTTTTGACATAGCACACAACAATTTTAGTGGTGAAATACCCAAAAAAAGCGTGACTACATGGCAGGCAATGATGGGCAACGAAGATGATGCCCAGTCAAAGATCAATTTCCTGCAATTTCTAATAGTCGGTGACTTAAATTATCAGGATGCTATAACAGTTACCACCAAAGGACAAGAGATGGAGTTGGTCAAGATTCTAACTGTCTTCACCTCTATTGACATCTCGTGCAACAATTTCAATGGATTAATACCGGCACAAGTGGGACAACTAAAAGCGCTCCATGGCCTCAACTTGTCCAACAATGCTCTCACAGGCCCTATCCCACCATCATTGAGTAACCTGACACAACTCGAGTCCTTGGACCTTTCAAACAACAGCCTGAGCGGGCCAATTCCACCAGAGCTTACAGTGCTTACTTTCCTTTCATTCTTGAATCTCTCAAATAACCAACTGTCTGGGAAGATACCAATCGGAAATCAGTTTTTAACATTTTCTCCATCTTCCTATGAAGATAATGAAGGATTATGTGGGACACCTTTGGCTGTAAGCTGCGGCAATACCAGCTACTCATCAGATGCAACTTCAATGGTTGAAAACAAAGGTGGAATTGGGTTTGATTGGCAGTCCATATACACTGGACTGGGGTTTGGAGTCGGAGCAGGAGTGGTTGTTATTCTCTTAATGTTGTGGGAGGAAGGAAGAAATTGGATGGACGACAGCATTGATAAAACTCTTCTGGTACTTCTTCCAGTGATGGGATTCTCTTACAAAACTCGTCATGAATGGGATGATGATGGGGAGGAAGATTACGAGGAAGATAGCATGTATTTCACAGGAGACTATGATCGAGATGAGATTGAATCAGAAGACAAAGGATTTCAGGGTCCATTTTGTGTGTTTTGTTCGAAACTTGATATCAGTAGGAAGAGTCCCATCCATAACCCAAATTGTACATGTCATTTGTCACCACCTATCTCATCTACTTCTTCCTCCTCGTCCTCGTTCTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1129

Amino Acids

124.39

Weight (kDa)

5.02

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 43 - 83 4e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 462 - 522 8.9e-07 Leucine rich repeat
LRR_8 PF13855 862 - 919 3.4e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
Acc65I GGTACC 3 cut(s) 877, 1429, 2354
AccB1I GGYRCC 3 cut(s) 877, 1429, 2354
AccB7I CCANNNNNTGG 1 cut(s) 950
AccBSI CCGCTC 1 cut(s) 2760
AccI GTMKAC 1 cut(s) 776
AciI CCGC 3 cut(s) 2067, 2760, 2928
AclWI GGATC 1 cut(s) 1984
AcoI YGGCCR 4 cut(s) 112, 1161, 2134, 2360
AcuI CTGAAG 8 cut(s) 176, 749, 944, 1474, 1805, 1985, 2146, 2294
AdeI CACNNNGTG 1 cut(s) 89
AfeI AGCGCT 1 cut(s) 2652
AfiI CCNNNNNNNGG 5 cut(s) 100, 355, 950, 1822, 3131
AflIII ACRYGT 2 cut(s) 1116, 3329
AjnI CCWGG 6 cut(s) 756, 873, 977, 1972, 2131, 2357
AjuI GAANNNNNNNTTGG 2 cut(s) 1331, 1363
Alw21I GWGCWC 2 cut(s) 634, 958
Alw26I GTCTC 6 cut(s) 15, 112, 220, 247, 1944, 3207
AlwI GGATC 1 cut(s) 1984
AlwNI CAGNNNCTG 1 cut(s) 967
Ama87I CYCGRG 1 cut(s) 2726
Aor51HI AGCGCT 1 cut(s) 2652
AoxI GGCC 8 cut(s) 112, 706, 1161, 2134, 2360, 2659, 2689, 2762
ApeKI GCWGC 4 cut(s) 133, 282, 931, 2925
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AseI ATTAAT 1 cut(s) 2621
Asp718I GGTACC 3 cut(s) 877, 1429, 2354
AspLEI GCGC 1 cut(s) 2653
AspS9I GGNCC 7 cut(s) 707, 1067, 1696, 2690, 2737, 2762, 3260
AsuC2I CCSGG 2 cut(s) 451, 522
AsuHPI GGTGA 7 cut(s) 211, 1261, 1876, 2417, 2516, 2575, 3333
AsuII TTCGAA 1 cut(s) 3281
AsuNHI GCTAGC 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 2726
AvaII GGWCC 4 cut(s) 1067, 1696, 2737, 3260
BaeI ACNNNNGTAYC 2 cut(s) 1421, 1454
BalI TGGCCA 4 cut(s) 114, 1163, 2136, 2362
BanI GGYRCC 3 cut(s) 877, 1429, 2354
BanII GRGCYC 2 cut(s) 634, 958
BarI GAAGNNNNNNTAC 2 cut(s) 1413, 1445
BauI CACGAG 1 cut(s) 2599
BbsI GAAGAC 3 cut(s) 1924, 2572, 3249
Bbv12I GWGCWC 2 cut(s) 634, 958
BbvCI CCTCAGC 1 cut(s) 671
BbvI GCAGC 4 cut(s) 145, 294, 918, 2912
BcgI CGANNNNNNTGC 2 cut(s) 2444, 2478
BciT130I CCWGG 6 cut(s) 758, 875, 979, 1974, 2133, 2359
BciVI GTATCC 1 cut(s) 2306
BcnI CCSGG 2 cut(s) 451, 522
BcoDI GTCTC 6 cut(s) 15, 112, 220, 247, 1944, 3207
BfaI CTAG 6 cut(s) 407, 974, 1890, 2156, 2177, 2201
BfmI CTRYAG 2 cut(s) 332, 887
BfoI RGCGCY 1 cut(s) 2654
BfuI GTATCC 1 cut(s) 2306
BglII AGATCT 1 cut(s) 867
BisI GCNGC 5 cut(s) 134, 283, 932, 2926, 2929
BlsI GCNGC 5 cut(s) 135, 284, 933, 2927, 2930
Bme1390I CCNGG 8 cut(s) 451, 522, 758, 875, 979, 1974, 2133, 2359
Bme18I GGWCC 4 cut(s) 1067, 1696, 2737, 3260
BmeT110I CYCGRG 1 cut(s) 2726
BmgT120I GGNCC 7 cut(s) 707, 1067, 1696, 2690, 2737, 2762, 3260
BmiI GGNNCC 6 cut(s) 879, 1068, 1431, 1498, 2356, 3261
BmrFI CCNGG 8 cut(s) 451, 522, 758, 875, 979, 1974, 2133, 2359
BmrI ACTGGG 3 cut(s) 388, 2461, 3026
BmsI GCATC 6 cut(s) 556, 2046, 2289, 2452, 2512, 2941
BmtI GCTAGC 1 cut(s) 410
BmuI ACTGGG 3 cut(s) 388, 2461, 3026
BpiI GAAGAC 3 cut(s) 1924, 2572, 3249
BpmI CTGGAG 3 cut(s) 765, 779, 1659
Bpu10I CCTNAGC 2 cut(s) 671, 2756
Bpu14I TTCGAA 1 cut(s) 3281
BpuEI CTTGAG 4 cut(s) 298, 563, 1007, 1687
BpuMI CCSGG 2 cut(s) 451, 522
Bsa29I ATCGAT 1 cut(s) 290
BsaBI GATNNNNATC 2 cut(s) 558, 2843
BsaI GGTCTC 2 cut(s) 15, 112
BsaJI CCNNGG 4 cut(s) 1453, 2233, 2656, 2733
BsaXI ACNNNNNCTCC 8 cut(s) 246, 276, 2854, 2884, 3024, 3030, 3054, 3060
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 355, 950, 1822, 3131
Bse118I RCCGGY 2 cut(s) 1897, 2626
Bse3DI GCAATG 3 cut(s) 916, 1993, 2448
Bse8I GATNNNNATC 2 cut(s) 558, 2843
BseBI CCWGG 6 cut(s) 758, 875, 979, 1974, 2133, 2359
BseCI ATCGAT 1 cut(s) 290
BseDI CCNNGG 4 cut(s) 1453, 2233, 2656, 2733
BseGI GGATG 8 cut(s) 389, 547, 1601, 2342, 2527, 3090, 3169, 3309
BseJI GATNNNNATC 2 cut(s) 558, 2843
BseLI CCNNNNNNNGG 5 cut(s) 100, 355, 950, 1822, 3131
BseMI GCAATG 3 cut(s) 916, 1993, 2448
BseMII CTCAG 5 cut(s) 100, 647, 662, 1608, 2747
BseRI GAGGAG 1 cut(s) 3358
BseXI GCAGC 4 cut(s) 145, 294, 918, 2912
BseYI CCCAGC 1 cut(s) 1227
BshFI GGCC 8 cut(s) 114, 708, 1163, 2136, 2362, 2661, 2691, 2764
BshNI GGYRCC 3 cut(s) 877, 1429, 2354
BshVI ATCGAT 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 634, 958
BsiHKCI CYCGRG 1 cut(s) 2726
BsiSI CCGG 5 cut(s) 450, 522, 1004, 1898, 2627
BslFI GGGAC 9 cut(s) 949, 1080, 1282, 1817, 1839, 2325, 2652, 2920, 3291
BslI CCNNNNNNNGG 5 cut(s) 100, 355, 950, 1822, 3131
BsmAI GTCTC 6 cut(s) 15, 112, 220, 247, 1944, 3207
BsmFI GGGAC 9 cut(s) 949, 1080, 1282, 1817, 1839, 2325, 2652, 2920, 3291
BsmI GAATGC 1 cut(s) 1968
BsnI GGCC 8 cut(s) 114, 708, 1163, 2136, 2362, 2661, 2691, 2764
Bso31I GGTCTC 2 cut(s) 15, 112
BsoBI CYCGRG 1 cut(s) 2726
Bsp119I TTCGAA 1 cut(s) 3281
Bsp1286I GDGCHC 2 cut(s) 634, 958
Bsp1407I TGTACA 1 cut(s) 3326
Bsp143I GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
Bsp19I CCATGG 1 cut(s) 2656
BspACI CCGC 3 cut(s) 2067, 2760, 2928
BspANI GGCC 8 cut(s) 114, 708, 1163, 2136, 2362, 2661, 2691, 2764
BspCNI CTCAG 5 cut(s) 99, 646, 663, 1607, 2748
BspDI ATCGAT 1 cut(s) 290
BspHI TCATGA 2 cut(s) 831, 3154
BspLI GGNNCC 6 cut(s) 879, 1068, 1431, 1498, 2356, 3261
BspMAI CTGCAG 2 cut(s) 336, 891
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 1 cut(s) 1984
BspQI GCTCTTC 3 cut(s) 909, 963, 2270
BspT104I TTCGAA 1 cut(s) 3281
BspT107I GGYRCC 3 cut(s) 877, 1429, 2354
BspTNI GGTCTC 2 cut(s) 15, 112
BsrBI CCGCTC 1 cut(s) 2760
BsrDI GCAATG 3 cut(s) 916, 1993, 2448
BsrFI RCCGGY 2 cut(s) 1897, 2626
BsrGI TGTACA 1 cut(s) 3326
BssAI RCCGGY 2 cut(s) 1897, 2626
BssECI CCNNGG 4 cut(s) 1453, 2233, 2656, 2733
BssMI GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
BssSI CACGAG 1 cut(s) 2599
BssT1I CCWWGG 3 cut(s) 2233, 2656, 2733
Bst2BI CACGAG 1 cut(s) 2599
Bst2UI CCWGG 6 cut(s) 758, 875, 979, 1974, 2133, 2359
Bst4CI ACNGT 9 cut(s) 1296, 1396, 1429, 1514, 1930, 2533, 2578, 2785, 2829
Bst6I CTCTTC 6 cut(s) 909, 963, 1387, 2270, 3114, 3296
BstAUI TGTACA 1 cut(s) 3326
BstBI TTCGAA 1 cut(s) 3281
BstC8I GCNNGC 7 cut(s) 180, 408, 442, 2110, 2270, 2439, 2762
BstDEI CTNAG 5 cut(s) 86, 633, 671, 1594, 2756
BstDSI CCRYGG 1 cut(s) 2656
BstF5I GGATG 8 cut(s) 389, 547, 1601, 2342, 2527, 3090, 3169, 3309
BstH2I RGCGCY 1 cut(s) 2654
BstHHI GCGC 1 cut(s) 2653
BstKTI GATC 8 cut(s) 870, 1549, 1675, 1979, 2014, 2312, 2478, 3223
BstMAI GTCTC 6 cut(s) 15, 112, 220, 247, 1944, 3207
BstMBI GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
BstMWI GCNNNNNNNGC 5 cut(s) 544, 629, 983, 2785, 2937
BstNI CCWGG 6 cut(s) 758, 875, 979, 1974, 2133, 2359
BstNSI RCATGY 3 cut(s) 1120, 3202, 3333
BstSCI CCNGG 8 cut(s) 449, 520, 756, 873, 977, 1972, 2131, 2357
BstSFI CTRYAG 2 cut(s) 332, 887
BstV1I GCAGC 4 cut(s) 145, 294, 918, 2912
BstV2I GAAGAC 3 cut(s) 1924, 2572, 3249
BstX2I RGATCY 1 cut(s) 867
BstXI CCANNNNNNTGG 4 cut(s) 196, 1718, 1861, 2831
BstYI RGATCY 1 cut(s) 867
Bsu15I ATCGAT 1 cut(s) 290
BsuI GTATCC 1 cut(s) 2306
BsuRI GGCC 8 cut(s) 114, 708, 1163, 2136, 2362, 2661, 2691, 2764
BsuTUI ATCGAT 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 2656
BtsCI GGATG 8 cut(s) 389, 547, 1601, 2342, 2527, 3090, 3169, 3309
BtsI GCAGTG 2 cut(s) 659, 884
Cac8I GCNNGC 7 cut(s) 180, 408, 442, 2110, 2270, 2439, 2762
CaiI CAGNNNCTG 1 cut(s) 967
CciI TCATGA 2 cut(s) 831, 3154
CfoI GCGC 1 cut(s) 2653
Cfr10I RCCGGY 2 cut(s) 1897, 2626
Cfr13I GGNCC 7 cut(s) 707, 1067, 1696, 2690, 2737, 2762, 3260
ClaI ATCGAT 1 cut(s) 290
CseI GACGC 2 cut(s) 1980, 2337
CspCI CAANNNNNGTGG 6 cut(s) 1474, 1509, 2383, 2418, 2688, 2723
DdeI CTNAG 5 cut(s) 86, 633, 671, 1594, 2756
DpnI GATC 8 cut(s) 869, 1548, 1674, 1978, 2013, 2311, 2477, 3222
DpnII GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
DraIII CACNNNGTG 1 cut(s) 89
EaeI YGGCCR 4 cut(s) 112, 1161, 2134, 2360
Eam1104I CTCTTC 6 cut(s) 909, 963, 1387, 2270, 3114, 3296
EarI CTCTTC 6 cut(s) 909, 963, 1387, 2270, 3114, 3296
EciI GGCGGA 1 cut(s) 2082
Ecl136II GAGCTC 2 cut(s) 632, 956
Eco130I CCWWGG 3 cut(s) 2233, 2656, 2733
Eco24I GRGCYC 2 cut(s) 634, 958
Eco31I GGTCTC 2 cut(s) 15, 112
Eco32I GATATC 1 cut(s) 3292
Eco47I GGWCC 4 cut(s) 1067, 1696, 2737, 3260
Eco47III AGCGCT 1 cut(s) 2652
Eco53kI GAGCTC 2 cut(s) 632, 956
Eco57I CTGAAG 8 cut(s) 176, 749, 944, 1474, 1805, 1985, 2146, 2294
Eco88I CYCGRG 1 cut(s) 2726
EcoICRI GAGCTC 2 cut(s) 632, 956
EcoO109I RGGNCCY 2 cut(s) 707, 2690
EcoRI GAATTC 2 cut(s) 835, 2115
EcoRII CCWGG 6 cut(s) 756, 873, 977, 1972, 2131, 2357
EcoRV GATATC 1 cut(s) 3292
EcoT14I CCWWGG 3 cut(s) 2233, 2656, 2733
EcoT38I GRGCYC 2 cut(s) 634, 958
ErhI CCWWGG 3 cut(s) 2233, 2656, 2733
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FaqI GGGAC 9 cut(s) 949, 1080, 1282, 1817, 1839, 2325, 2652, 2920, 3291
FauI CCCGC 1 cut(s) 2753
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 5 cut(s) 134, 283, 932, 2926, 2929
FokI GGATG 8 cut(s) 376, 534, 1588, 2349, 2534, 3097, 3176, 3296
FriOI GRGCYC 2 cut(s) 634, 958
Fsp4HI GCNGC 5 cut(s) 134, 283, 932, 2926, 2929
FspBI CTAG 6 cut(s) 407, 974, 1890, 2156, 2177, 2201
GlaI GCGC 1 cut(s) 2652
GluI GCNGC 5 cut(s) 134, 283, 932, 2926, 2929
GsaI CCCAGC 1 cut(s) 1231
GsuI CTGGAG 3 cut(s) 765, 779, 1659
HaeII RGCGCY 1 cut(s) 2654
HaeIII GGCC 8 cut(s) 114, 708, 1163, 2136, 2362, 2661, 2691, 2764
HapII CCGG 5 cut(s) 450, 522, 1004, 1898, 2627
HgaI GACGC 2 cut(s) 1980, 2337
HhaI GCGC 1 cut(s) 2653
Hin6I GCGC 1 cut(s) 2651
HinP1I GCGC 1 cut(s) 2651
HincII GTYRAC 2 cut(s) 480, 613
HindII GTYRAC 2 cut(s) 480, 613
HindIII AAGCTT 1 cut(s) 1130
HpaII CCGG 5 cut(s) 450, 522, 1004, 1898, 2627
HphI GGTGA 7 cut(s) 211, 1261, 1876, 2417, 2516, 2575, 3333
Hpy166II GTNNAC 5 cut(s) 302, 480, 613, 777, 1114
Hpy8I GTNNAC 5 cut(s) 302, 480, 613, 777, 1114
Hpy99I CGWCG 1 cut(s) 1400
HpyAV CCTTC 8 cut(s) 230, 1319, 1415, 1510, 1814, 2174, 2888, 3065
HpyCH4III ACNGT 9 cut(s) 1296, 1396, 1429, 1514, 1930, 2533, 2578, 2785, 2829
HpyF10VI GCNNNNNNNGC 5 cut(s) 544, 629, 983, 2785, 2937
HpyF3I CTNAG 5 cut(s) 86, 633, 671, 1594, 2756
HspAI GCGC 1 cut(s) 2651
KpnI GGTACC 3 cut(s) 881, 1433, 2358
Kzo9I GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
LguI GCTCTTC 3 cut(s) 909, 963, 2270
LmnI GCTCC 7 cut(s) 153, 629, 953, 1502, 1965, 2658, 3032
Lsp1109I GCAGC 4 cut(s) 145, 294, 918, 2912
LweI GCATC 6 cut(s) 556, 2046, 2289, 2452, 2512, 2941
MaeI CTAG 6 cut(s) 407, 974, 1890, 2156, 2177, 2201
MaeIII GTNAC 7 cut(s) 262, 1574, 2425, 2504, 2533, 2711, 3339
MalI GATC 8 cut(s) 869, 1548, 1674, 1978, 2013, 2311, 2477, 3222
MbiI CCGCTC 1 cut(s) 2760
MboI GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
MfeI CAATTG 1 cut(s) 2206
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 2 cut(s) 634, 958
MlsI TGGCCA 4 cut(s) 114, 1163, 2136, 2362
MluNI TGGCCA 4 cut(s) 114, 1163, 2136, 2362
MlyI GAGTC 4 cut(s) 1607, 2738, 3036, 3313
MmeI TCCRAC 6 cut(s) 175, 994, 1362, 1506, 2697, 3010
Mox20I TGGCCA 4 cut(s) 114, 1163, 2136, 2362
MscI TGGCCA 4 cut(s) 114, 1163, 2136, 2362
MslI CAYNNNNRTG 2 cut(s) 603, 2263
Msp20I TGGCCA 4 cut(s) 114, 1163, 2136, 2362
MspI CCGG 5 cut(s) 450, 522, 1004, 1898, 2627
MspR9I CCNGG 8 cut(s) 451, 522, 758, 875, 979, 1974, 2133, 2359
MunI CAATTG 1 cut(s) 2206
Mva1269I GAATGC 1 cut(s) 1968
MvaI CCWGG 6 cut(s) 758, 875, 979, 1974, 2133, 2359
MwoI GCNNNNNNNGC 5 cut(s) 544, 629, 983, 2785, 2937
NciI CCSGG 2 cut(s) 451, 522
NcoI CCATGG 1 cut(s) 2656
NdeII GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
NheI GCTAGC 1 cut(s) 406
NlaIV GGNNCC 6 cut(s) 879, 1068, 1431, 1498, 2356, 3261
NmuCI GTSAC 3 cut(s) 2425, 2504, 3339
NspI RCATGY 3 cut(s) 1120, 3202, 3333
NspV TTCGAA 1 cut(s) 3281
PaeR7I CTCGAG 1 cut(s) 2726
PagI TCATGA 2 cut(s) 831, 3154
PciI ACATGT 2 cut(s) 1116, 3329
PciSI GCTCTTC 3 cut(s) 909, 963, 2270
PctI GAATGC 1 cut(s) 1968
PflFI GACNNNGTC 1 cut(s) 1394
PflMI CCANNNNNTGG 1 cut(s) 950
PfoI TCCNGGA 2 cut(s) 520, 1972
PkrI GCNGC 5 cut(s) 135, 284, 933, 2927, 2930
PleI GAGTC 4 cut(s) 1606, 2737, 3035, 3312
PpsI GAGTC 4 cut(s) 1606, 2737, 3035, 3312
PscI ACATGT 2 cut(s) 1116, 3329
PshBI ATTAAT 1 cut(s) 2621
PsiI TTATAA 1 cut(s) 363
Psp124BI GAGCTC 2 cut(s) 634, 958
Psp6I CCWGG 6 cut(s) 756, 873, 977, 1972, 2131, 2357
PspFI CCCAGC 1 cut(s) 1227
PspGI CCWGG 6 cut(s) 756, 873, 977, 1972, 2131, 2357
PspN4I GGNNCC 6 cut(s) 879, 1068, 1431, 1498, 2356, 3261
PspPI GGNCC 7 cut(s) 707, 1067, 1696, 2690, 2737, 2762, 3260
PspXI VCTCGAGB 1 cut(s) 2726
PstI CTGCAG 2 cut(s) 336, 891
PstNI CAGNNNCTG 1 cut(s) 967
PsuI RGATCY 1 cut(s) 867
PsyI GACNNNGTC 1 cut(s) 1394
RseI CAYNNNNRTG 2 cut(s) 603, 2263
SacI GAGCTC 2 cut(s) 634, 958
SapI GCTCTTC 3 cut(s) 909, 963, 2270
SatI GCNGC 5 cut(s) 134, 283, 932, 2926, 2929
Sau3AI GATC 8 cut(s) 867, 1546, 1672, 1976, 2011, 2309, 2475, 3220
Sau96I GGNCC 7 cut(s) 707, 1067, 1696, 2690, 2737, 2762, 3260
SchI GAGTC 4 cut(s) 1607, 2738, 3036, 3313
ScrFI CCNGG 8 cut(s) 451, 522, 758, 875, 979, 1974, 2133, 2359
SduI GDGCHC 2 cut(s) 634, 958
SfaNI GCATC 6 cut(s) 556, 2046, 2289, 2452, 2512, 2941
SfcI CTRYAG 2 cut(s) 332, 887
Sfr274I CTCGAG 1 cut(s) 2726
SfuI TTCGAA 1 cut(s) 3281
SinI GGWCC 4 cut(s) 1067, 1696, 2737, 3260
SlaI CTCGAG 1 cut(s) 2726
SmiMI CAYNNNNRTG 2 cut(s) 603, 2263
SmlI CTYRAG 5 cut(s) 277, 542, 1022, 1666, 2726
SmoI CTYRAG 5 cut(s) 277, 542, 1022, 1666, 2726
SsiI CCGC 3 cut(s) 2067, 2760, 2928
SspI AATATT 1 cut(s) 1615
SspMI CTAG 6 cut(s) 407, 974, 1890, 2156, 2177, 2201
SstI GAGCTC 2 cut(s) 634, 958
StyD4I CCNGG 8 cut(s) 449, 520, 756, 873, 977, 1972, 2131, 2357
StyI CCWWGG 3 cut(s) 2233, 2656, 2733
TaaI ACNGT 9 cut(s) 1296, 1396, 1429, 1514, 1930, 2533, 2578, 2785, 2829
TaqI TCGA 9 cut(s) 273, 290, 342, 591, 897, 1398, 2727, 3223, 3281
TatI WGTACW 3 cut(s) 1583, 2141, 3326
TauI GCSGC 1 cut(s) 2931
TseFI GTSAC 3 cut(s) 2425, 2504, 3339
TseI GCWGC 4 cut(s) 133, 282, 931, 2925
Tsp45I GTSAC 3 cut(s) 2425, 2504, 3339
TspGWI ACGGA 2 cut(s) 596, 1112
Tth111I GACNNNGTC 1 cut(s) 1394
Van91I CCANNNNNTGG 1 cut(s) 950
VpaK11BI GGWCC 4 cut(s) 1067, 1696, 2737, 3260
VspI ATTAAT 1 cut(s) 2621
XbaI TCTAGA 2 cut(s) 2155, 2176
XceI RCATGY 3 cut(s) 1120, 3202, 3333
XcmI CCANNNNNNNNNTGG 1 cut(s) 1627
XhoI CTCGAG 1 cut(s) 2726
XmiI GTMKAC 1 cut(s) 776
XspI CTAG 6 cut(s) 407, 974, 1890, 2156, 2177, 2201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.