Rroxscaffold_6G00416620

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000047
Physical Location & Seq
Reverse (-)
38590729 .. 38595732
5004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416620.1

Sequence Viewer

Length: 3705 bp
ATGAAGACTCTGCTGCCTTTCTTCCTTTTCTTGATCGCTGCAGTTCACAGCCAGCAGTGTACCAAAGACCAGCAACTAACGTTGCTCGATTTCAAGAATGGCCTCGTTTTTAATTCTTCTCTTTCCTCCAAGCTTGTATCATGGAATTCAAGAACCGACTGCTGTTCTTGGTCGGGTGTAACTTGCAGTACTAACGGGACTGTTGTTGCTCTTGACATCAGCCGCGAGTCTATCTCAGGTGGAATCGACAACTCTAGCAGTTTGTTTGATCTTCAACATCTTCGAAGCCTCAGTTTGGCCTTTAACAACTTCACTGGCTCTCAAATTTCAACTGCAACCGGAAAGCTCACAAGTTTGAGGTACCTAAACTTATCCTCTGCTGGTTATGCAGGGCAAATTCCCATTGAGATTTCGTTGTTGGCAAAGTTGGTTATCCTTGATATTTCCAATCAAGGACTTGAGATCCAGAATTTGAGCTTGCTGGTTCAGAACCTCACAAAACTTACAGAGTTATATCTTGACAATGTGAATATATTGTCACAGAGAAGTGACTGGTCCCTAGCCATATCATCATCACTGCCAAACCTGAAGGTGTTGAGCTTATCCAACTGTCATCTCTCAGGCCCTATTGACAAGTCCCTGGCTCAGCTCTCATCTCTATCCGTAATTCGGTTGGATTTTAACAAGATATCTTCTCCCATTCCTGGATTCATTGCCAACTTTACAAACTTGACTGCCTTGAGTCTCAGTAGCTGTGGTTTGCAGGGAACATTTCCAAAAGAGATCATTCAGGTACCTTCTTTACAAACTATTGATCTTTCCTATAACTATGGTCTTGGTGGTTCCTTGCCCGAATTTTCAAAGAATGCATCTCTTCAGTCCTTGAACCTATTTGTGACAAACTTTTCAGGGGTCTTACCTGACTCCATTGGAAACCTCAATATGTTGTCAACAATAGATCTTACAGGATGCAAATTTACTGGATCAATTCCAAGGTCGATGCGAAACCTTACAAAATTGGTTCATTTTGACTTGTCAGGGAATCAGTTTACTGGTTCAATTCCATGCTTCAGCAGAGCGAAAAATCTAGCCGAAATAAATCTGTCTGGCAATGATCTAACTGGTCATATTAGTTGCACTCAGTGGCAAAACCTTACTAGCCTAGTGACTATCAACTTAAGTAACAATATGCTCCAAGGGAACCTTTCATCCTCTTTGTTTTGTCTTCCCTTGCTGAAGAGCTTAGATCTTGGCCACAATCAATTCTCTGGTCAGTTCCCTGAAATTTGCAATGCCTCTTCTTACTTGTTGGAAATTGTTGACTTAAGTGACAACAACCTTGAAGGGCCAATACCCATGTCTATCTTTAATCTCAGAGGACTTCAGAGACTTCTTCTTAATTCAAACAGTCTCAATGGCTCATTTCCTCTTGATGGTCTTCACAAGCTCATAAATCTTCAGTTTCTTTATCTTTCAGAGAATAGCTTGGTGCTCAGTTATGATGCTACCAATTCCTTTTATTCCTCATTTCCTCAGCTTTATCAATTGATGTTGGCTTCAGGAAAGTTGACAACATTCCCTGATTTCTTGAGAAATCAATCCGAATTGGCCTTTCTGGACCTTTCAAATAACCTGATACATGGCATGATACCTAACTGGCTTTGGAAGCTTAATCTTCATCATCTGAACCTTTCCTGTAACTCCCTACGAACTATAGAAGGTCCTTTACTCAATGTCACCTCTCCGTGGTTGCTGGACCTCAGTTACAACAGGCTTCAAGGGCAGATCCCAAATTTCTCTTCTTATTATCTGGATTACTCCAGCAATAATTTCAGCTCTGGCATACCGACTGTTGCAGATTTCTCTAGGTATACTTCATTTTTCTCTGTTGGAAACAATAACCTCAATGGGATCATTCCCGGCTCAATGTGCAATTCAGCAGCTCTTGAGGTTCTTGATCTATCCAATAATTCCTTCACTGGCACTCTTCCTCGATGCTTCACTACAATGAGTAGCCTAGCAGTACTTGATTTAAGTGGAAACAATGTTACAAATGTTCATGCATTACCTCAGAATTGTAACTTGGGAAGTCTAGACCTAAGCGGAAATCAGTTAGAAGGCCAGCTTCCAAAATCTCTTGTCAACTGCACAAAGTTGGAGGTTTTAAACCTTGGAAACAATCGGATAACGGATACTTTTCCATGCTTCTTGAAGAACATATCCACCTTGCGTCTCCTTAGTTTACGGTCCAATAACTTTTATGGACCCACTGGTTGTCCCAAGACTAATGGAGCTTGGCCAATGCTTCAGGTTATAGACCTCGCTGACAACAATTTTGATGGTGAAATATCTGGAAGATTTTTGTCAACCTGGCAAACGATGATAGCCAACAAAGATGATGCTACATCAAATCGCTATCACCTTGGAATGCAGGGAGGTATGCATTATGTGATTAATTATCGAGATGCAGTTACAGTTAGTAGCAAAGGTTTACAGATGAACCTGGCAAAGATTCTAACTGTTTTCACCTTAATTGATTTCTCATGCAACAAGTTCAATGGATCAATACCAGAGGAAATTGGAGGACTCAAATCATTACGTGTCCTCAACTTGTCTAATAATGCTTTCACAGGTGCAATCCCATCATCATTAAGTAACTTGCAAGTAGTTGAGTCTTTAGACCTCTCGCAGAACAACCTGAGCGGTGAAATTCCACCACAGTTTGCAAAGCTTACTTTCCTTTCATTCTTGAATCTCTCAAATAACCAACTGGGGGGGAAGATTCCTACAAGTACTCAGTTTTCAACATTTCCAAAAACTTCATTTGAAGGAAATAAAGATCTATGGGGACCTCCTTTAACAGAAGAAAACACAGCGGGAACATCACCACCAACAATAGAAGGAAGCAGTCAAATTTCTGGACATGAGGTTGATTGGGATGTTATCAGTGTTGAAATTGGATTTGCATCTGGCTTTGGAGTTGCCATTGCGTCACTATTCTTATGCAAGAGATGGAGGCAGTGGTATTACATGGCTATGTATAACATGCTTGTTAGGATATTCCCTCAGCTAGAACAAAGATTTGGCAATCACAGAAGACATGTTTCCATCCATCAACGGTATCTCCATGGAATTGAAAATTCCAGCAATCTCGTTGATCTTCAACATCTTCAAAGCCTCAATTTGGCCTTTAACGACGTGGTTGGGGTATTTCCAAAAGAGTTCTTTCAGGTACCTTCTCTAGAAACTCTTGACCTTTCTTATAATCCGGAACTTCAAGGTTCCTTGCCAGAATTTCCAAACAATGGATCTCTCCGGTCCTTGGTTCTAAGTGAGACAAACTTTTCGGGGACGTTACCAAACTCTATTGTTAAACTTGAAAAGTTGTCCACTCTAGATATTGCAGATTGCAGTTTCAGTGGATCAATCCCAATGTCAATAGGAAACCTTACACAACTGGTGCAATTGTCAATGTCTTTTAACTACCTTAACGGTGCAGTTCCATCATTCAGTAGGGCAAAGAATCTGGCCGTGATAGATCTTTCTTACAATTATGGTCTAACAGGTCCTATTAATTCCACTCGCTGGGAAAACCTCACTAACTTGGTCAATCTCAACTTGGGTTTCAATATGCTTGATGGGAATATTCCATCATCTCTGTTTTCTCTGCCCTTGCTCTATAGTCTAGATCTTTCCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1234

Amino Acids

135.36

Weight (kDa)

5.72

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 63 4.4e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 80 - 295 3.5e-13 Leucine-rich repeat region
LRR_14 PF23598 286 - 421 3.1e-06 Leucine-rich repeat region
LRR_8 PF13855 630 - 682 3.7e-08 Leucine rich repeat
LRR_14 PF23598 838 - 922 6.7e-07 Leucine-rich repeat region
LRR_8 PF13855 865 - 924 1.2e-07 Leucine rich repeat
LRR_8 PF13855 1050 - 1090 8e-06 Leucine rich repeat
LRR_14 PF23598 1056 - 1159 5.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3264
Acc65I GGTACC 3 cut(s) 360, 793, 3232
AccB1I GGYRCC 3 cut(s) 360, 793, 3232
AccB7I CCANNNNNTGG 2 cut(s) 3305, 3585
AccBSI CCGCTC 1 cut(s) 2703
AccI GTMKAC 1 cut(s) 1871
AccII CGCG 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 3268
AciI CCGC 4 cut(s) 223, 2103, 2703, 2876
AclI AACGTT 1 cut(s) 80
AclWI GGATC 7 cut(s) 457, 991, 1780, 1919, 2569, 3316, 3430
AcoI YGGCCR 3 cut(s) 1252, 2297, 3528
AcuI CTGAAG 8 cut(s) 608, 860, 1054, 1256, 1367, 1442, 1542, 2291
AdeI CACNNNGTG 1 cut(s) 1143
AfaI GTAC 7 cut(s) 61, 190, 362, 795, 2025, 2794, 3234
AflII CTTAAG 2 cut(s) 1177, 1324
AflIII ACRYGT 2 cut(s) 2599, 3100
AjiI CACGTC 1 cut(s) 3199
AjnI CCWGG 4 cut(s) 639, 703, 2369, 2502
AjuI GAANNNNNNNTTGG 8 cut(s) 1783, 1815, 1958, 1990, 2066, 2098, 3066, 3098
AloI GAACNNNNNNTCC 2 cut(s) 1193, 1225
Alw21I GWGCWC 1 cut(s) 1494
Alw26I GTCTC 5 cut(s) 749, 1381, 1415, 2237, 3329
AlwI GGATC 7 cut(s) 457, 991, 1780, 1919, 2569, 3316, 3430
AlwNI CAGNNNCTG 1 cut(s) 753
Aor13HI TCCGGA 1 cut(s) 3268
ApeKI GCWGC 3 cut(s) 13, 38, 1940
ArsI GACNNNNNNTTYG 4 cut(s) 2318, 2350, 3328, 3360
AseI ATTAAT 2 cut(s) 2454, 3573
Asp718I GGTACC 3 cut(s) 360, 793, 3232
AsuC2I CCSGG 1 cut(s) 1920
AsuHPI GGTGA 6 cut(s) 1729, 2354, 2411, 2518, 2717, 2877
AsuII TTCGAA 1 cut(s) 283
AvaII GGWCC 9 cut(s) 555, 1618, 1721, 1756, 2247, 2264, 2849, 3318, 3566
BalI TGGCCA 2 cut(s) 1254, 2299
BanI GGYRCC 3 cut(s) 360, 793, 3232
BarI GAAGNNNNNNTAC 4 cut(s) 1335, 1367, 1710, 1742
BbsI GAAGAC 4 cut(s) 11, 1217, 1430, 3103
Bbv12I GWGCWC 1 cut(s) 1494
BbvCI CCTCAGC 2 cut(s) 1533, 3066
BbvI GCAGC 2 cut(s) 25, 1952
BccI CCATC 9 cut(s) 1427, 2333, 2650, 3006, 3116, 3120, 3511, 3632, 3658
BceAI ACGGC 1 cut(s) 3515
BciT130I CCWGG 4 cut(s) 641, 705, 2371, 2504
BciVI GTATCC 1 cut(s) 2185
BcnI CCSGG 1 cut(s) 1920
BcoDI GTCTC 5 cut(s) 749, 1381, 1415, 2237, 3329
BfmI CTRYAG 3 cut(s) 39, 1713, 3679
BfrI CTTAAG 2 cut(s) 1177, 1324
BfuI GTATCC 1 cut(s) 2185
BglII AGATCT 5 cut(s) 958, 1246, 2839, 3538, 3688
BisI GCNGC 4 cut(s) 14, 39, 223, 1941
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 4 cut(s) 15, 40, 224, 1942
BmcAI AGTACT 3 cut(s) 190, 2025, 2794
Bme1390I CCNGG 5 cut(s) 641, 705, 1920, 2371, 2504
Bme18I GGWCC 9 cut(s) 555, 1618, 1721, 1756, 2247, 2264, 2849, 3318, 3566
BmgBI CACGTC 1 cut(s) 3199
BmiI GGNNCC 9 cut(s) 362, 557, 795, 844, 1202, 2266, 2850, 3234, 3283
BmrFI CCNGG 5 cut(s) 641, 705, 1920, 2371, 2504
BmrI ACTGGG 1 cut(s) 2780
BmsI GCATC 8 cut(s) 878, 959, 990, 1492, 1985, 2389, 2455, 2975
BmuI ACTGGG 1 cut(s) 2780
BpiI GAAGAC 4 cut(s) 11, 1217, 1430, 3103
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 1 cut(s) 1804
Bpu10I CCTNAGC 4 cut(s) 1533, 2099, 2699, 3066
Bpu1102I GCTNAGC 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 4 cut(s) 479, 760, 1609, 1967
BpuMI CCSGG 1 cut(s) 1920
BsaAI YACGTR 1 cut(s) 2600
BsaBI GATNNNNATC 1 cut(s) 2965
BsaJI CCNNGG 8 cut(s) 639, 992, 1195, 1745, 2170, 2422, 3127, 3321
BsaWI WCCGGW 3 cut(s) 338, 3268, 3315
BsaXI ACNNNNNCTCC 2 cut(s) 3108, 3138
Bse3DI GCAATG 4 cut(s) 711, 1117, 1297, 2985
Bse8I GATNNNNATC 1 cut(s) 2965
BseAI TCCGGA 1 cut(s) 3268
BseBI CCWGG 4 cut(s) 641, 705, 2371, 2504
BseDI CCNNGG 8 cut(s) 639, 992, 1195, 1745, 2170, 2422, 3127, 3321
BseGI GGATG 4 cut(s) 974, 1208, 2944, 3108
BseJI GATNNNNATC 1 cut(s) 2965
BseMI GCAATG 4 cut(s) 711, 1117, 1297, 2985
BseXI GCAGC 2 cut(s) 25, 1952
BseYI CCCAGC 1 cut(s) 3585
BsgI GTGCAG 2 cut(s) 2131, 3516
Bsh1236I CGCG 1 cut(s) 225
BshNI GGYRCC 3 cut(s) 360, 793, 3232
BsiHKAI GWGCWC 1 cut(s) 1494
BsiSI CCGG 4 cut(s) 339, 1920, 3269, 3316
BslFI GGGAC 6 cut(s) 211, 541, 622, 2262, 2862, 3364
BsmAI GTCTC 5 cut(s) 749, 1381, 1415, 2237, 3329
BsmBI CGTCTC 1 cut(s) 2237
BsmFI GGGAC 6 cut(s) 211, 541, 622, 2262, 2862, 3364
BsmI GAATGC 2 cut(s) 871, 2433
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 1494
Bsp13I TCCGGA 1 cut(s) 3268
Bsp1720I GCTNAGC 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 3127
BspACI CCGC 4 cut(s) 223, 2103, 2703, 2876
BspEI TCCGGA 1 cut(s) 3268
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 9 cut(s) 362, 557, 795, 844, 1202, 2266, 2850, 3234, 3283
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 7 cut(s) 457, 991, 1780, 1919, 2569, 3316, 3430
BspQI GCTCTTC 1 cut(s) 1232
BspT104I TTCGAA 1 cut(s) 283
BspT107I GGYRCC 3 cut(s) 360, 793, 3232
BspTI CTTAAG 2 cut(s) 1177, 1324
BsrBI CCGCTC 1 cut(s) 2703
BsrDI GCAATG 4 cut(s) 711, 1117, 1297, 2985
BssECI CCNNGG 8 cut(s) 639, 992, 1195, 1745, 2170, 2422, 3127, 3321
BssNAI GTATAC 1 cut(s) 1872
BssT1I CCWWGG 6 cut(s) 992, 1195, 2170, 2422, 3127, 3321
Bst1107I GTATAC 1 cut(s) 1872
Bst2UI CCWGG 4 cut(s) 641, 705, 2371, 2504
Bst6I CTCTTC 5 cut(s) 879, 1232, 1303, 1804, 1992
BstAFI CTTAAG 2 cut(s) 1177, 1324
BstBAI YACGTR 1 cut(s) 2600
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 3 cut(s) 53, 479, 2123
BstDSI CCRYGG 2 cut(s) 1745, 3127
BstF5I GGATG 4 cut(s) 974, 1208, 2944, 3108
BstFNI CGCG 1 cut(s) 225
BstMAI GTCTC 5 cut(s) 749, 1381, 1415, 2237, 3329
BstMWI GCNNNNNNNGC 4 cut(s) 386, 1666, 1780, 1929
BstNI CCWGG 4 cut(s) 641, 705, 2371, 2504
BstNSI RCATGY 2 cut(s) 3049, 3104
BstSCI CCNGG 5 cut(s) 639, 703, 1918, 2369, 2502
BstSFI CTRYAG 3 cut(s) 39, 1713, 3679
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 25, 1952
BstV2I GAAGAC 4 cut(s) 11, 1217, 1430, 3103
BstX2I RGATCY 8 cut(s) 462, 958, 1246, 1785, 2839, 3308, 3538, 3688
BstYI RGATCY 8 cut(s) 462, 958, 1246, 1785, 2839, 3308, 3538, 3688
BstZ17I GTATAC 1 cut(s) 1872
BsuI GTATCC 1 cut(s) 2185
BtgI CCRYGG 2 cut(s) 1745, 3127
BtrI CACGTC 1 cut(s) 3199
BtsCI GGATG 4 cut(s) 974, 1208, 2944, 3108
BtsI GCAGTG 3 cut(s) 62, 575, 3026
BtsIMutI CAGTG 9 cut(s) 62, 312, 575, 1148, 1977, 2268, 2953, 3026, 3424
Cac8I GCNNGC 3 cut(s) 53, 479, 2123
CaiI CAGNNNCTG 1 cut(s) 753
CseI GACGC 2 cut(s) 2219, 2979
Csp6I GTAC 7 cut(s) 60, 189, 361, 794, 2024, 2793, 3233
CviQI GTAC 7 cut(s) 60, 189, 361, 794, 2024, 2793, 3233
DraI TTTAAA 1 cut(s) 2166
DraIII CACNNNGTG 1 cut(s) 1143
EaeI YGGCCR 3 cut(s) 1252, 2297, 3528
Eam1104I CTCTTC 5 cut(s) 879, 1232, 1303, 1804, 1992
EarI CTCTTC 5 cut(s) 879, 1232, 1303, 1804, 1992
Eco130I CCWWGG 6 cut(s) 992, 1195, 2170, 2422, 3127, 3321
Eco32I GATATC 1 cut(s) 690
Eco47I GGWCC 9 cut(s) 555, 1618, 1721, 1756, 2247, 2264, 2849, 3318, 3566
Eco57I CTGAAG 8 cut(s) 608, 860, 1054, 1256, 1367, 1442, 1542, 2291
EcoO109I RGGNCCY 4 cut(s) 623, 1721, 2849, 3566
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 4 cut(s) 639, 703, 2369, 2502
EcoRV GATATC 1 cut(s) 690
EcoT14I CCWWGG 6 cut(s) 992, 1195, 2170, 2422, 3127, 3321
EcoT22I ATGCAT 3 cut(s) 871, 2065, 2445
ErhI CCWWGG 6 cut(s) 992, 1195, 2170, 2422, 3127, 3321
Esp3I CGTCTC 1 cut(s) 2237
FalI AAGNNNNNCTT 4 cut(s) 1188, 1220, 2109, 2141
FaqI GGGAC 6 cut(s) 211, 541, 622, 2262, 2862, 3364
FauI CCCGC 1 cut(s) 2869
FblI GTMKAC 1 cut(s) 1871
Fnu4HI GCNGC 4 cut(s) 14, 39, 223, 1941
FokI GGATG 4 cut(s) 981, 1195, 2951, 3095
Fsp4HI GCNGC 4 cut(s) 14, 39, 223, 1941
GluI GCNGC 4 cut(s) 14, 39, 223, 1941
GsaI CCCAGC 1 cut(s) 3589
GsuI CTGGAG 1 cut(s) 1804
HapII CCGG 4 cut(s) 339, 1920, 3269, 3316
HgaI GACGC 2 cut(s) 2219, 2979
HincII GTYRAC 5 cut(s) 951, 1321, 1569, 2143, 2367
HindII GTYRAC 5 cut(s) 951, 1321, 1569, 2143, 2367
HindIII AAGCTT 3 cut(s) 131, 1667, 2729
HpaII CCGG 4 cut(s) 339, 1920, 3269, 3316
HphI GGTGA 6 cut(s) 1729, 2354, 2411, 2518, 2717, 2877
Hpy188I TCNGA 8 cut(s) 489, 1376, 1386, 1477, 1603, 1686, 2073, 2184
Hpy99I CGWCG 1 cut(s) 3200
HpyAV CCTTC 9 cut(s) 583, 807, 1337, 1712, 1984, 2111, 2822, 2894, 3246
HpyCH4IV ACGT 4 cut(s) 80, 2599, 3198, 3353
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 1666, 1780, 1929
HpySE526I ACGT 4 cut(s) 80, 2599, 3198, 3353
Kpn2I TCCGGA 1 cut(s) 3268
KpnI GGTACC 3 cut(s) 364, 797, 3236
LguI GCTCTTC 1 cut(s) 1232
LmnI GCTCC 2 cut(s) 1197, 2291
Lsp1109I GCAGC 2 cut(s) 25, 1952
LweI GCATC 8 cut(s) 878, 959, 990, 1492, 1985, 2389, 2455, 2975
MaeII ACGT 4 cut(s) 80, 2599, 3198, 3353
MbiI CCGCTC 1 cut(s) 2703
MfeI CAATTG 2 cut(s) 1544, 3464
MflI RGATCY 8 cut(s) 462, 958, 1246, 1785, 2839, 3308, 3538, 3688
MhlI GDGCHC 1 cut(s) 1494
MlsI TGGCCA 2 cut(s) 1254, 2299
MluNI TGGCCA 2 cut(s) 1254, 2299
MlyI GAGTC 5 cut(s) 236, 751, 917, 2580, 2681
MmeI TCCRAC 5 cut(s) 630, 654, 1290, 1870, 2136
Mox20I TGGCCA 2 cut(s) 1254, 2299
Mph1103I ATGCAT 3 cut(s) 871, 2065, 2445
MroI TCCGGA 1 cut(s) 3268
MscI TGGCCA 2 cut(s) 1254, 2299
MslI CAYNNNNRTG 2 cut(s) 2006, 3035
Msp20I TGGCCA 2 cut(s) 1254, 2299
MspA1I CMGCKG 1 cut(s) 2876
MspCI CTTAAG 2 cut(s) 1177, 1324
MspI CCGG 4 cut(s) 339, 1920, 3269, 3316
MspR9I CCNGG 5 cut(s) 641, 705, 1920, 2371, 2504
MunI CAATTG 2 cut(s) 1544, 3464
Mva1269I GAATGC 2 cut(s) 871, 2433
MvaI CCWGG 4 cut(s) 641, 705, 2371, 2504
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 386, 1666, 1780, 1929
NciI CCSGG 1 cut(s) 1920
NcoI CCATGG 1 cut(s) 3127
NlaIV GGNNCC 9 cut(s) 362, 557, 795, 844, 1202, 2266, 2850, 3234, 3283
NmuCI GTSAC 7 cut(s) 537, 548, 895, 1165, 1328, 1735, 2991
NsiI ATGCAT 3 cut(s) 871, 2065, 2445
NspI RCATGY 2 cut(s) 3049, 3104
NspV TTCGAA 1 cut(s) 283
PciI ACATGT 1 cut(s) 3100
PciSI GCTCTTC 1 cut(s) 1232
PctI GAATGC 2 cut(s) 871, 2433
PfeI GAWTC 7 cut(s) 243, 708, 1042, 2512, 2752, 2782, 3523
PflMI CCANNNNNTGG 2 cut(s) 3305, 3585
PfoI TCCNGGA 1 cut(s) 703
PkrI GCNGC 4 cut(s) 15, 40, 224, 1942
PleI GAGTC 5 cut(s) 235, 750, 917, 2580, 2680
PpsI GAGTC 5 cut(s) 235, 750, 917, 2580, 2680
Ppu21I YACGTR 1 cut(s) 2600
PpuMI RGGWCCY 3 cut(s) 1721, 2849, 3566
PscI ACATGT 1 cut(s) 3100
PshBI ATTAAT 2 cut(s) 2454, 3573
PsiI TTATAA 1 cut(s) 3264
Psp1406I AACGTT 1 cut(s) 80
Psp5II RGGWCCY 3 cut(s) 1721, 2849, 3566
Psp6I CCWGG 4 cut(s) 639, 703, 2369, 2502
PspFI CCCAGC 1 cut(s) 3585
PspGI CCWGG 4 cut(s) 639, 703, 2369, 2502
PspN4I GGNNCC 9 cut(s) 362, 557, 795, 844, 1202, 2266, 2850, 3234, 3283
PspPPI RGGWCCY 3 cut(s) 1721, 2849, 3566
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 753
PsuI RGATCY 8 cut(s) 462, 958, 1246, 1785, 2839, 3308, 3538, 3688
RsaI GTAC 7 cut(s) 61, 190, 362, 795, 2025, 2794, 3234
RsaNI GTAC 7 cut(s) 60, 189, 361, 794, 2024, 2793, 3233
RseI CAYNNNNRTG 2 cut(s) 2006, 3035
SapI GCTCTTC 1 cut(s) 1232
SatI GCNGC 4 cut(s) 14, 39, 223, 1941
ScaI AGTACT 3 cut(s) 190, 2025, 2794
SchI GAGTC 5 cut(s) 236, 751, 917, 2580, 2681
ScrFI CCNGG 5 cut(s) 641, 705, 1920, 2371, 2504
SduI GDGCHC 1 cut(s) 1494
SfaNI GCATC 8 cut(s) 878, 959, 990, 1492, 1985, 2389, 2455, 2975
SfcI CTRYAG 3 cut(s) 39, 1713, 3679
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 9 cut(s) 555, 1618, 1721, 1756, 2247, 2264, 2849, 3318, 3566
SmiMI CAYNNNNRTG 2 cut(s) 2006, 3035
SmlI CTYRAG 6 cut(s) 458, 739, 1177, 1324, 1588, 1946
SmoI CTYRAG 6 cut(s) 458, 739, 1177, 1324, 1588, 1946
SsiI CCGC 4 cut(s) 223, 2103, 2703, 2876
SspI AATATT 1 cut(s) 3646
StyD4I CCNGG 5 cut(s) 639, 703, 1918, 2369, 2502
StyI CCWWGG 6 cut(s) 992, 1195, 2170, 2422, 3127, 3321
TaiI ACGT 4 cut(s) 83, 2602, 3201, 3356
TaqI TCGA 6 cut(s) 87, 246, 283, 998, 1993, 2461
TatI WGTACW 3 cut(s) 188, 2023, 2792
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 7 cut(s) 243, 708, 1042, 2512, 2752, 2782, 3523
TscAI CASTG 9 cut(s) 62, 319, 582, 1148, 1984, 2275, 2953, 3026, 3424
TseFI GTSAC 7 cut(s) 537, 548, 895, 1165, 1328, 1735, 2991
TseI GCWGC 3 cut(s) 13, 38, 1940
Tsp45I GTSAC 7 cut(s) 537, 548, 895, 1165, 1328, 1735, 2991
TspGWI ACGGA 3 cut(s) 652, 1734, 2204
TspRI CASTG 9 cut(s) 62, 319, 582, 1148, 1984, 2275, 2953, 3026, 3424
Van91I CCANNNNNTGG 2 cut(s) 3305, 3585
Vha464I CTTAAG 2 cut(s) 1177, 1324
VpaK11BI GGWCC 9 cut(s) 555, 1618, 1721, 1756, 2247, 2264, 2849, 3318, 3566
VspI ATTAAT 2 cut(s) 2454, 3573
XbaI TCTAGA 4 cut(s) 2092, 3241, 3394, 3685
XceI RCATGY 2 cut(s) 3049, 3104
XmiI GTMKAC 1 cut(s) 1871
ZrmI AGTACT 3 cut(s) 190, 2025, 2794
Zsp2I ATGCAT 3 cut(s) 871, 2065, 2445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.