RchiOBHm_Chr3g0461931

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000047
Physical Location & Seq
Forward (+)
9822516 .. 9825726
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42832

Sequence Viewer

Length: 3189 bp
ATGAAAACTTGGCTACATTTCTTCCTTCTCTTAGTCACACTCTGGGTTAGTATCATCATCATCATTATCCCTCTAGTTCATAGCAAGTGCATTCCAGACCAGCAACAATCATTGCTCGATTTCAAGAGCAACCTTTTATTCAATTCCTCTCTTTCCTCCAAGCTTATTAGCTGGAACTCAAGTACCGATTGCTGCTCTTGGGTCGGAGTTACTTGCAGCACCAATGGCCGTGTTCTGGGTATTGACCTCAGCAGTGAGTCAATCTCAGGTGGCATTGACAATTCCAGCAGTCTCTTCCATCTTCAAAATCTTCAAAGCCTCAATTTGGCGGACAACGAACTCGGCAACGGCTCTCAATCAATTCCATCTGCAGTCGGGCAGCTCATGAATTTGAGGTATCTAAATTTATCTCACAATGCTTATTCAGGGCAAATCCCGATTGAGATTTCACGCTTGACGAGGTTGGCAGTTCTTGATATTTCTCAAAAATATGGGTTCCTTGAGATCTTGAATTTACACAAGCTGGTAGAGAATCTCACAGAGCTTAGAGAGTTGTATCTTGATGATGTCCAAATATCAGCAGAGGGGAGTGAGTGGTGCCAAGCCATATCATCTTCCCTTCCCAACCTCAGGGTGTTGAGCTTGTCCTCTTGTAATCTTTCAGGCCCTTTTCACGAGTCTCTTGCTAACCTCCGATCTCTCTCCGTGATTCAATTGGGATCGAACAATATCTTTGCTCCAGTTCCAGCATTCTTTGCCAACTTTTCAAACTTGACAACCTTGATTCTCGATTATTGTAATTTGCAAGGAACATTTCCGAAAGAGATCTTTCTATTACCTTCTCTTCGTGAGATTAGCTTTTTGATGAATGTAAACCTTGATGGTTCCTTGCCAGAATTTCCAAAGAATGGATCTCTTCAATTCCTGGATCTAAGCGGGACTAAATTTTCAGGGGCATTACCAAACTCTATTGGCAACCTCAAAATGTTGTCCACATTTCATATTGAAGACTGTAATTTCACGGGATCAATGCCCAAGTCAATGACAAACCTTACGCAATTGGTTTCTTTGTTGATGTATGGAAACAACTTTGAAGGTTCAATTCCGTCATTCAGTGCGGCCAAGAATCTAGAAGTAGTACATCTCGGTTTCAATGGTCTGACAGGTAATATTAATTGCATCCACTGGGGAAACCTTACTAACCTATTGCTTCTTGACTTATCTTACAATATGCTCAGTGGGAATATTCCATCAGCTCTGTTTTCTCTTCCCTTGCTGGGTAGGGTAGATCTTTCCAACAACCAATTCTCTGGTCATTTTTCAGAAATTTCTAATCTCTCATCCTACTCTGTCAAATACCTTGATTTGAGTAGAAACAATCTGGAAGGGCCAATTCCTATGTCTATCTTTAATTTACGGAGCCTTAATCATCTTTTTCTTTCTTCAAACAATTTCAGTGGTTCATTTCCTCTAGATGGTCTTCAACATCTGAGAAATCTTTCTTCTCTTTATCTTTCAAACAACAGCTTGCTTCTTTGCCATGATGCTACCAATTTCTCATATTCCTACTATCCTCAGTTCAAATATTTGTTGTTGGCTTCATTAAACTTGAGAACATTCCCTGATTTCTTGAGAAATCAATCTGAATTACTTTCTTTAGATCTTTCAGATAACCAGATACAGGGCAAGATACCCAACTGGATTTGGAGGTCCAATAATCTCTTTTACCTAAATCTTTCATGCAACTCTCTAGAAACTCTAGAAGGTCATACAATCAATCTCACTTATATGGAAACCCTTGACCTTCATTCCAACAAGCTTCATGGGAAAATCCCAATTTTCTCGTCACCTCACATACTTTATCTGGATTACTCAAGGAACAACTTCAGCTCTACCATACCGACTACCATTGAAGATATGATTCTTCACACCAGATTCTTCTCTGTTGCTAGTAATAACCTTCAAGGGATCATCCCAAGATCAATATGCAATTCAGATAGCCTTGAGGTTCTTGATATGTCAAATAATTCCTTGAGTGGCACAGTACCTCACTGCTTGTCAACAATGAGCACTCTTTCGGTACTTAATTTAAGGAGAAACAATTTTAGAAATGTAGGCATGTTGTCTCACAATTGCAGTTTGCAGACTCTAGACATCAGTGAAAATCATATACAAAGTCAGTTTCTGAAATCACTCGTCAATTGCCCTCAATTAGAGGTTCTGAACCTTGGAAAGAATCAAATAACAGGTCCATTTCCATGCCTTTTGAAGGACATATCCACCTTGCGTGTCCTTATCTTGAGATCCAATAAATTTTATGGAGGTATTGGATGTCCCAAGATTAATGGCACTTGGCCAATGCTTCAAATCATAGACCTAGCTCACAACAATTTTAGTGGAAATGTACCAGGGATAGCATTGACAACTTGGCAGGAAATGATGGCTAATGAAGATGATGCCTCATCAAAGCTCAATCACCTTCAATTCCAGAACAACTCTAGTGGGATTTATTATCAGGATACAGTTACGATTACCAACAAAGGTTTCGAGATAGAGCTGATAAAGATTTTAACAGTCTTCACCTCGATCGATTTCTCATGCAACAAATTCAACGGATCAATACCTCGTGAAATTGGAGAACTCAAATCACTGCATATCCTCAACTTGTCCAATAATGCTTTCACAGGTGCAATTCCAACATCATTAAGCAACTTGAGTCAGCTAGAGTCTTTAGACCTCTCACAGAACACCTTGAGCGGTCAAATTCCACCACAGCTTACAAAACTCACTTTCCTTTCAGTCTTGAATTTTTCACATAATCAATTGGTCGGCAAGATTCCGAGCAGTAACCAGTTTCCAACATTTCCAAAATCTTCCTTTGAAGGAAACAAAGATTTATTCGGGCCTCCTTTGACTGAAGAAAACAGAACAAGGTTGTCACCTCCGGCAACGAAAAGAAGCCATCCAAGTTCTGGAGATGAGATTGATTGGAATATCATCATTGTTGAGATTGGATTTACATGTGGGTTCGGAATTGTGGTTGGATCACTTTTGTGTTGCAAAAGATGGAGGAAATGGTATTATATAACTATGTATCGCATTCTTGTGAAGATATTTCCTCAGCTGGAACAAAGGTTTGGTCATCACAGAAGACATGTGTATACAGGCGCAAGGTACTGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1062

Amino Acids

118.75

Weight (kDa)

6.65

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 73 3.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 91 - 189 1.1e-07 Leucine-rich repeat region
LRR_14 PF23598 305 - 360 3.7e-07 Leucine-rich repeat region
LRR_8 PF13855 451 - 510 9.7e-07 Leucine rich repeat
LRR_8 PF13855 649 - 702 1.7e-06 Leucine rich repeat
LRR_8 PF13855 713 - 772 4.8e-07 Leucine rich repeat
LRR_4 PF12799 713 - 749 6.5e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 873 - 938 1.9e-06 Leucine-rich repeat region
LRR_8 PF13855 883 - 942 5.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 597
AccB7I CCANNNNNTGG 2 cut(s) 908, 2972
AccBSI CCGCTC 1 cut(s) 2757
AccI GTMKAC 1 cut(s) 3161
AciI CCGC 4 cut(s) 329, 936, 1118, 2757
AclWI GGATC 8 cut(s) 727, 919, 936, 1033, 1976, 2298, 2623, 3052
AcoI YGGCCR 3 cut(s) 226, 1119, 2354
AcuI CTGAAG 2 cut(s) 1870, 2937
AfaI GTAC 6 cut(s) 184, 1140, 2046, 2082, 2406, 3176
AfiI CCNNNNNNNGG 9 cut(s) 235, 325, 630, 908, 1277, 1475, 1681, 2269, 2972
AflIII ACRYGT 2 cut(s) 3020, 3154
AjnI CCWGG 2 cut(s) 924, 2407
AjuI GAANNNNNNNTTGG 8 cut(s) 1289, 1321, 2528, 2560, 2663, 2695, 3120, 3152
AleI CACNNNNGTG 1 cut(s) 3052
Alw21I GWGCWC 1 cut(s) 2072
Alw26I GTCTC 4 cut(s) 296, 684, 2130, 3175
AlwI GGATC 8 cut(s) 727, 919, 936, 1033, 1976, 2298, 2623, 3052
AlwNI CAGNNNCTG 1 cut(s) 2185
AoxI GGCC 6 cut(s) 226, 664, 1119, 1388, 2354, 2903
ApeKI GCWGC 3 cut(s) 192, 216, 379
ArsI GACNNNNNNTTYG 4 cut(s) 2233, 2265, 3124, 3156
AseI ATTAAT 2 cut(s) 1173, 2343
Asp700I GAANNNNTTC 2 cut(s) 1498, 1883
AspLEI GCGC 1 cut(s) 3170
AspS9I GGNCC 5 cut(s) 665, 1388, 1710, 2249, 2903
AsuHPI GGTGA 4 cut(s) 1839, 2468, 2572, 2931
AvaII GGWCC 2 cut(s) 1710, 2249
AxyI CCTNAGG 1 cut(s) 629
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BalI TGGCCA 1 cut(s) 2356
BanI GGYRCC 1 cut(s) 597
BauI CACGAG 2 cut(s) 674, 2625
BbsI GAAGAC 4 cut(s) 1014, 1472, 2569, 3157
Bbv12I GWGCWC 1 cut(s) 2072
BbvCI CCTCAGC 2 cut(s) 248, 3120
BbvI GCAGC 3 cut(s) 179, 228, 391
BccI CCATC 8 cut(s) 306, 373, 875, 1258, 1469, 2434, 2970, 3060
BceAI ACGGC 2 cut(s) 213, 364
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 2 cut(s) 926, 2409
BciVI GTATCC 1 cut(s) 2512
BcoDI GTCTC 4 cut(s) 296, 684, 2130, 3175
BfmI CTRYAG 1 cut(s) 369
BfuI GTATCC 1 cut(s) 2512
BglII AGATCT 4 cut(s) 504, 825, 1288, 1660
BisI GCNGC 4 cut(s) 193, 217, 380, 1119
BlsI GCNGC 4 cut(s) 194, 218, 381, 1120
Bme1390I CCNGG 2 cut(s) 926, 2409
Bme18I GGWCC 2 cut(s) 1710, 2249
BmgT120I GGNCC 5 cut(s) 665, 1388, 1710, 2249, 2903
BmiI GGNNCC 4 cut(s) 497, 599, 886, 1421
BmrFI CCNGG 2 cut(s) 926, 2409
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 3 cut(s) 1188, 1534, 2446
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 4 cut(s) 1014, 1472, 2569, 3157
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 2 cut(s) 723, 2994
Bpu10I CCTNAGC 2 cut(s) 248, 3120
Bsa29I ATCGAT 1 cut(s) 2589
BsaJI CCNNGG 2 cut(s) 2227, 2408
Bsc4I CCNNNNNNNGG 9 cut(s) 235, 325, 630, 908, 1277, 1475, 1681, 2269, 2972
Bse1I ACTGG 5 cut(s) 740, 1190, 1703, 2851, 3182
Bse21I CCTNAGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 926, 2409
BseCI ATCGAT 1 cut(s) 2589
BseDI CCNNGG 2 cut(s) 2227, 2408
BseGI GGATG 5 cut(s) 1179, 1340, 1971, 2336, 2962
BseLI CCNNNNNNNGG 9 cut(s) 235, 325, 630, 908, 1277, 1475, 1681, 2269, 2972
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 7 cut(s) 262, 279, 643, 1249, 1481, 1589, 3134
BseNI ACTGG 5 cut(s) 740, 1190, 1703, 2851, 3182
BseXI GCAGC 3 cut(s) 179, 228, 391
BseYI CCCAGC 1 cut(s) 1276
Bsh1285I CGRYCG 1 cut(s) 2589
BshFI GGCC 6 cut(s) 228, 666, 1121, 1390, 2356, 2905
BshNI GGYRCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 2589
BsiEI CGRYCG 1 cut(s) 2589
BsiHKAI GWGCWC 1 cut(s) 2072
BsiSI CCGG 1 cut(s) 2945
BslFI GGGAC 2 cut(s) 952, 2319
BslI CCNNNNNNNGG 9 cut(s) 235, 325, 630, 908, 1277, 1475, 1681, 2269, 2972
BsmAI GTCTC 4 cut(s) 296, 684, 2130, 3175
BsmBI CGTCTC 1 cut(s) 3175
BsmFI GGGAC 2 cut(s) 952, 2319
BsmI GAATGC 3 cut(s) 90, 749, 3099
BsnI GGCC 6 cut(s) 228, 666, 1121, 1390, 2356, 2905
Bsp1286I GDGCHC 1 cut(s) 2072
BspACI CCGC 4 cut(s) 329, 936, 1118, 2757
BspANI GGCC 6 cut(s) 228, 666, 1121, 1390, 2356, 2905
BspCNI CTCAG 7 cut(s) 261, 278, 642, 1248, 1482, 1588, 3133
BspDI ATCGAT 1 cut(s) 2589
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 4 cut(s) 497, 599, 886, 1421
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 8 cut(s) 727, 919, 936, 1033, 1976, 2298, 2623, 3052
BspT107I GGYRCC 1 cut(s) 597
BsrBI CCGCTC 1 cut(s) 2757
BsrDI GCAATG 1 cut(s) 110
BsrI ACTGG 5 cut(s) 740, 1190, 1703, 2851, 3182
BssECI CCNNGG 2 cut(s) 2227, 2408
BssNAI GTATAC 1 cut(s) 3162
BssSI CACGAG 2 cut(s) 674, 2625
BssT1I CCWWGG 1 cut(s) 2227
Bst1107I GTATAC 1 cut(s) 3162
Bst2BI CACGAG 2 cut(s) 674, 2625
Bst2UI CCWGG 2 cut(s) 926, 2409
Bst4CI ACNGT 4 cut(s) 1013, 2044, 2524, 2575
Bst6I CTCTTC 4 cut(s) 299, 849, 921, 1272
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 1529
BstENI CCTNNNNNAGG 1 cut(s) 2267
BstF5I GGATG 5 cut(s) 1179, 1340, 1971, 2336, 2962
BstHHI GCGC 1 cut(s) 3170
BstMAI GTCTC 4 cut(s) 296, 684, 2130, 3175
BstMCI CGRYCG 1 cut(s) 2589
BstMWI GCNNNNNNNGC 2 cut(s) 225, 755
BstNI CCWGG 2 cut(s) 926, 2409
BstNSI RCATGY 3 cut(s) 2122, 3024, 3158
BstSCI CCNGG 2 cut(s) 924, 2407
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 179, 228, 391
BstV2I GAAGAC 4 cut(s) 1014, 1472, 2569, 3157
BstX2I RGATCY 7 cut(s) 504, 825, 911, 928, 1288, 1660, 2303
BstXI CCANNNNNNTGG 1 cut(s) 1310
BstYI RGATCY 7 cut(s) 504, 825, 911, 928, 1288, 1660, 2303
BstZ17I GTATAC 1 cut(s) 3162
Bsu15I ATCGAT 1 cut(s) 2589
Bsu36I CCTNAGG 1 cut(s) 629
BsuI GTATCC 1 cut(s) 2512
BsuRI GGCC 6 cut(s) 228, 666, 1121, 1390, 2356, 2905
BsuTUI ATCGAT 1 cut(s) 2589
BtsCI GGATG 5 cut(s) 1179, 1340, 1971, 2336, 2962
BtsI GCAGTG 3 cut(s) 259, 2050, 2648
BtsIMutI CAGTG 8 cut(s) 259, 1120, 1183, 1243, 1462, 2050, 2164, 2648
Cac8I GCNNGC 1 cut(s) 1529
CaiI CAGNNNCTG 1 cut(s) 2185
CciI TCATGA 1 cut(s) 384
CfoI GCGC 1 cut(s) 3170
Cfr13I GGNCC 5 cut(s) 665, 1388, 1710, 2249, 2903
ClaI ATCGAT 1 cut(s) 2589
Csp6I GTAC 6 cut(s) 183, 1139, 2045, 2081, 2405, 3175
CspCI CAANNNNNGTGG 6 cut(s) 1438, 1473, 2377, 2412, 2482, 2517
CviAII CATG 9 cut(s) 385, 1541, 1740, 1823, 2119, 2259, 2598, 3021, 3155
CviQI GTAC 6 cut(s) 183, 1139, 2045, 2081, 2405, 3175
EaeI YGGCCR 3 cut(s) 226, 1119, 2354
Eam1104I CTCTTC 4 cut(s) 299, 849, 921, 1272
EarI CTCTTC 4 cut(s) 299, 849, 921, 1272
EciI GGCGGA 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 2227
Eco47I GGWCC 2 cut(s) 1710, 2249
Eco57I CTGAAG 2 cut(s) 1870, 2937
Eco81I CCTNAGG 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 2267
EcoO109I RGGNCCY 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 924, 2407
EcoT14I CCWWGG 1 cut(s) 2227
ErhI CCWWGG 1 cut(s) 2227
Esp3I CGTCTC 1 cut(s) 3175
FaeI CATG 9 cut(s) 388, 1544, 1743, 1826, 2122, 2262, 2601, 3024, 3158
FaqI GGGAC 2 cut(s) 952, 2319
FatI CATG 9 cut(s) 384, 1540, 1739, 1822, 2118, 2258, 2597, 3020, 3154
FauI CCCGC 1 cut(s) 929
FblI GTMKAC 1 cut(s) 3161
Fnu4HI GCNGC 4 cut(s) 193, 217, 380, 1119
FokI GGATG 5 cut(s) 1166, 1327, 1958, 2343, 2949
Fsp4HI GCNGC 4 cut(s) 193, 217, 380, 1119
GlaI GCGC 1 cut(s) 3169
GluI GCNGC 4 cut(s) 193, 217, 380, 1119
GsaI CCCAGC 1 cut(s) 1280
GsuI CTGGAG 2 cut(s) 723, 2994
HaeIII GGCC 6 cut(s) 228, 666, 1121, 1390, 2356, 2905
HapII CCGG 1 cut(s) 2945
HhaI GCGC 1 cut(s) 3170
Hin1II CATG 9 cut(s) 388, 1544, 1743, 1826, 2122, 2262, 2601, 3024, 3158
Hin6I GCGC 1 cut(s) 3168
HinP1I GCGC 1 cut(s) 3168
HincII GTYRAC 1 cut(s) 2061
HindII GTYRAC 1 cut(s) 2061
HindIII AAGCTT 2 cut(s) 161, 1817
HpaII CCGG 1 cut(s) 2945
HphI GGTGA 4 cut(s) 1839, 2468, 2572, 2931
Hpy166II GTNNAC 4 cut(s) 874, 993, 2061, 3162
Hpy8I GTNNAC 4 cut(s) 874, 993, 2061, 3162
HpyCH4III ACNGT 4 cut(s) 1013, 2044, 2524, 2575
HpyCH4IV ACGT 1 cut(s) 3184
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 755
HpySE526I ACGT 1 cut(s) 3184
Hsp92II CATG 9 cut(s) 388, 1544, 1743, 1826, 2122, 2262, 2601, 3024, 3158
HspAI GCGC 1 cut(s) 3168
LmnI GCTCC 2 cut(s) 742, 1419
Lsp1109I GCAGC 3 cut(s) 179, 228, 391
LweI GCATC 3 cut(s) 1188, 1534, 2446
MaeII ACGT 1 cut(s) 3184
MaeIII GTNAC 6 cut(s) 34, 208, 1845, 2524, 2846, 2937
MbiI CCGCTC 1 cut(s) 2757
MfeI CAATTG 5 cut(s) 713, 1058, 2131, 2200, 2822
MflI RGATCY 7 cut(s) 504, 825, 911, 928, 1288, 1660, 2303
MhlI GDGCHC 1 cut(s) 2072
MlsI TGGCCA 1 cut(s) 2356
MluNI TGGCCA 1 cut(s) 2356
MlyI GAGTC 5 cut(s) 266, 686, 2140, 2725, 2735
MmeI TCCRAC 6 cut(s) 184, 1320, 1836, 2720, 2882, 3022
Mox20I TGGCCA 1 cut(s) 2356
MroXI GAANNNNTTC 2 cut(s) 1498, 1883
MscI TGGCCA 1 cut(s) 2356
MseI TTAA 9 cut(s) 1173, 1410, 1425, 1604, 2085, 2090, 2343, 2570, 2705
MslI CAYNNNNRTG 4 cut(s) 1787, 2257, 3052, 3104
Msp20I TGGCCA 1 cut(s) 2356
MspA1I CMGCKG 1 cut(s) 3124
MspI CCGG 1 cut(s) 2945
MspR9I CCNGG 2 cut(s) 926, 2409
MunI CAATTG 5 cut(s) 713, 1058, 2131, 2200, 2822
Mva1269I GAATGC 3 cut(s) 90, 749, 3099
MvaI CCWGG 2 cut(s) 926, 2409
MwoI GCNNNNNNNGC 2 cut(s) 225, 755
NlaIII CATG 9 cut(s) 388, 1544, 1743, 1826, 2122, 2262, 2601, 3024, 3158
NlaIV GGNNCC 4 cut(s) 497, 599, 886, 1421
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 3 cut(s) 34, 1845, 2937
NspI RCATGY 3 cut(s) 2122, 3024, 3158
OliI CACNNNNGTG 1 cut(s) 3052
PagI TCATGA 1 cut(s) 384
PciI ACATGT 2 cut(s) 3020, 3154
PctI GAATGC 3 cut(s) 90, 749, 3099
PdmI GAANNNNTTC 2 cut(s) 1498, 1883
PfeI GAWTC 8 cut(s) 532, 709, 784, 1126, 1921, 1935, 2236, 2836
PflMI CCANNNNNTGG 2 cut(s) 908, 2972
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 4 cut(s) 194, 218, 381, 1120
Ple19I CGATCG 1 cut(s) 2589
PleI GAGTC 5 cut(s) 265, 685, 2140, 2724, 2734
PpsI GAGTC 5 cut(s) 265, 685, 2140, 2724, 2734
PscI ACATGT 2 cut(s) 3020, 3154
PshBI ATTAAT 2 cut(s) 1173, 2343
Psp6I CCWGG 2 cut(s) 924, 2407
PspFI CCCAGC 1 cut(s) 1276
PspGI CCWGG 2 cut(s) 924, 2407
PspN4I GGNNCC 4 cut(s) 497, 599, 886, 1421
PspPI GGNCC 5 cut(s) 665, 1388, 1710, 2249, 2903
PstI CTGCAG 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 2185
PsuI RGATCY 7 cut(s) 504, 825, 911, 928, 1288, 1660, 2303
PvuI CGATCG 1 cut(s) 2589
PvuII CAGCTG 1 cut(s) 3124
RsaI GTAC 6 cut(s) 184, 1140, 2046, 2082, 2406, 3176
RsaNI GTAC 6 cut(s) 183, 1139, 2045, 2081, 2405, 3175
RseI CAYNNNNRTG 4 cut(s) 1787, 2257, 3052, 3104
SaqAI TTAA 9 cut(s) 1173, 1410, 1425, 1604, 2085, 2090, 2343, 2570, 2705
SatI GCNGC 4 cut(s) 193, 217, 380, 1119
Sau96I GGNCC 5 cut(s) 665, 1388, 1710, 2249, 2903
SchI GAGTC 5 cut(s) 266, 686, 2140, 2725, 2735
ScrFI CCNGG 2 cut(s) 926, 2409
SduI GDGCHC 1 cut(s) 2072
SfaNI GCATC 3 cut(s) 1188, 1534, 2446
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 2 cut(s) 1710, 2249
SmiMI CAYNNNNRTG 4 cut(s) 1787, 2257, 3052, 3104
SsiI CCGC 4 cut(s) 329, 936, 1118, 2757
SspI AATATT 3 cut(s) 1171, 1246, 1586
StyD4I CCNGG 2 cut(s) 924, 2407
StyI CCWWGG 1 cut(s) 2227
TaaI ACNGT 4 cut(s) 1013, 2044, 2524, 2575
TaiI ACGT 1 cut(s) 3187
TaqI TCGA 6 cut(s) 117, 722, 789, 2547, 2585, 2589
TatI WGTACW 1 cut(s) 1138
TauI GCSGC 1 cut(s) 1121
TfiI GAWTC 8 cut(s) 532, 709, 784, 1126, 1921, 1935, 2236, 2836
Tru1I TTAA 9 cut(s) 1173, 1410, 1425, 1604, 2085, 2090, 2343, 2570, 2705
Tru9I TTAA 9 cut(s) 1173, 1410, 1425, 1604, 2085, 2090, 2343, 2570, 2705
TscAI CASTG 8 cut(s) 259, 1120, 1190, 1243, 1462, 2057, 2164, 2655
TseFI GTSAC 3 cut(s) 34, 1845, 2937
TseI GCWGC 3 cut(s) 192, 216, 379
Tsp45I GTSAC 3 cut(s) 34, 1845, 2937
TspGWI ACGGA 4 cut(s) 694, 1095, 1432, 2628
TspRI CASTG 8 cut(s) 259, 1120, 1190, 1243, 1462, 2057, 2164, 2655
Van91I CCANNNNNTGG 2 cut(s) 908, 2972
VpaK11BI GGWCC 2 cut(s) 1710, 2249
VspI ATTAAT 2 cut(s) 1173, 2343
XagI CCTNNNNNAGG 1 cut(s) 2267
XbaI TCTAGA 5 cut(s) 1129, 1471, 1750, 1759, 2149
XceI RCATGY 3 cut(s) 2122, 3024, 3158
XcmI CCANNNNNNNNNTGG 1 cut(s) 2969
XmiI GTMKAC 1 cut(s) 3161
XmnI GAANNNNTTC 2 cut(s) 1498, 1883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.