Rroxscaffold_6G00403540

receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
26006506 .. 26009038
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403540.1

Sequence Viewer

Length: 384 bp
ATGCCAACTCTGTTCCTCCATTTCTTCCTTTTCTTATTCACTACCACTGTTACTAACTTCATCCCCGCAGTCCACAGCAAGCGCATTGAAGCCCAACAACAATCATTGCTCCATTTCAAGAAAAGTCTTGCATCATCCGATTCTTCCGAATCCTCCAAGCTTATCACATGGAATTCGAGTACCGACCGCTGTTCTTGGCTCGGTGTAACTTGCAGCACCAATGGGCGTGTTGTCGAACTTGATCTCGGCGGCGAGTTTATCTTCTGCAGCATTGACAATTCAAGCAGTCTCTTCCAACTTCAACATCTTCGAGCCTCAATTTGGCCCATAACCACTTCAATGAGTCTTCAATTCCATCTGCAATCGGAAAGCTTGCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

6.49

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 72 2.5e-10 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 66, 187, 249
AcsI RAATTY 2 cut(s) 172, 378
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 6 cut(s) 89, 118, 282, 302, 339, 350
AluBI AGCT 2 cut(s) 160, 372
AluI AGCT 2 cut(s) 160, 372
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 213, 267
ApoI RAATTY 2 cut(s) 172, 378
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 225, 279
BccI CCATC 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 3 cut(s) 214, 250, 268
BlsI GCNGC 3 cut(s) 215, 251, 269
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 104
BseGI GGATG 2 cut(s) 60, 134
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 225, 279
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 3 cut(s) 66, 187, 249
BspANI GGCC 1 cut(s) 325
BspMAI CTGCAG 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 104
BssMI GATC 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 80, 374
BstF5I GGATG 2 cut(s) 60, 134
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 241
BstMCI CGRYCG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 225, 279
BstV2I GAAGAC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 2 cut(s) 60, 134
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 80, 374
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 168
CviJI RGCY 6 cut(s) 92, 160, 199, 314, 325, 372
CviKI_1 RGCY 6 cut(s) 92, 160, 199, 314, 325, 372
CviQI GTAC 1 cut(s) 180
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 1 cut(s) 171
FaiI YATR 2 cut(s) 169, 329
FatI CATG 1 cut(s) 167
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 214, 250, 268
FokI GGATG 2 cut(s) 47, 121
Fsp4HI GCNGC 3 cut(s) 214, 250, 268
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 214, 250, 268
HaeIII GGCC 1 cut(s) 325
HhaI GCGC 1 cut(s) 84
Hin1II CATG 1 cut(s) 171
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 2 cut(s) 158, 370
HinfI GANTC 3 cut(s) 140, 149, 343
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 139, 148, 367
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 5 cut(s) 131, 213, 267, 361, 376
Hsp92II CATG 1 cut(s) 171
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 114
Lsp1109I GCAGC 2 cut(s) 225, 279
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 49, 205
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 6 cut(s) 16, 135, 253, 283, 299, 338
MluCI AATT 5 cut(s) 172, 277, 318, 350, 378
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 3 cut(s) 26, 163, 325
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 189
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 225
PfeI GAWTC 2 cut(s) 140, 149
PkrI GCNGC 3 cut(s) 215, 251, 269
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 269
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 338
SatI GCNGC 3 cut(s) 214, 250, 268
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 352
SetI ASST 2 cut(s) 162, 374
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 5 cut(s) 172, 277, 318, 350, 378
SsiI CCGC 3 cut(s) 66, 187, 249
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 3 cut(s) 176, 234, 310
TasI AATT 5 cut(s) 172, 277, 318, 350, 378
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 2 cut(s) 140, 149
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 213, 267
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 52
XapI RAATTY 2 cut(s) 172, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.