MD04G1160600.v1.1

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000047
Physical Location & Seq
Forward (+)
25087426 .. 25096656
9231 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1160600.v1.1.491

Sequence Viewer

Length: 3219 bp
ATGGAAACAACTTACGTACCTAACACGGTATTCCCCGGCCCTACGCCTATCTCAGTTCACACCTACTCCATCAGAAAGACTTCAAAGGAAGCAAGTCAAGCCAACAAAATATCTCCCGTGGAAGATTTATCCCCGACATTAAAGGCAGATCCTTGTCTAATTCATTTCTGCAATGTTTTAATATCACTGGTTACAGTTAAAAGAAAACGACCCAAGACTTCAAAAGTCTGCAAGTCAAAAAGACTCCAAAGGGACAAAAACAATTTAAGGCCACCACACCAATCCTTGAGTTCATCAAACACTTTCCTTACTCGGCTAGCAAAAATGAAAACTTTACAATCTTTTGGCCTCCTATTCTTCTTCACTATCTGTCATATTGTCACAACTGGAGTCTACAGCCAGTGTCTTAAAGACCAGCAACTGTCATTGCTCCATTTGAAGAACAACCTCACATTTGATGATCTTGGTTCTCTGGTTTCCTCCCAGTTTGTATCGTGGGATTCAAGTACAGACTGTTGTTCTTGGATCGGTGTTACTTGCAGTAGCAACGGGAGTGTTGTTGGTCTCGACATTAGCAGCCAACACATCTCGGGTGGCATTGACAGCTCCAGCAGTCTCTTCGATCTTCAGCATCTTCAAAGCCTCAACTTGGCCGATAACTCTTTTGTCGAAGGCTCCCGCATTCCATCTGCAATTGGAAAGCTGACAAACTTGAGGTATCTAAATTTTTCAGATAATCATTATTTCGGGAAAATTCCCTTTGAGATTTCACGCTTGACAAGGTTGGAGATCCTTGATATTTCTCAAAGTTCCTATAATGGGGACCGCAAGCCACTTGAAATCTCGAAGTTCAGCATGCTCTTTCAGAACCTCTCAAACCTGACGGTGTTGAACTTGGACGGAAACAATATCTCTGCTCCGGTTCCAGGATTCTTTGCCAATTTTTCAAAGTTGACTACCTTGAATCTAAGTGATTGTGGGTTACGAGGAACATTTCCGAAGCAGATCTTTCAGGTACCTACTCTACAAACTATTGACCTTTCCTTGAATACGGAACTTCGTGGTTCCTTGCCAGAATTTCCCAAGAATGGATCTCTTCGATCCTTGATTTTAAGCGGGACAAGCTTTTCAGGGTTATTGCCCGACTCAATTGGCAACCTCAACATGTTGTTCACACTAGACCTTTCCGAATGTAATTTCACTGGATCAATCCCGAAGTCAATTGGAAATCTAACGAAATTGGTTGATTTGGACGCGTCATCAAACATGTTTAATGGTCCAATTAGTTCTATTCACTGGGAAAACCTTATTAATCTGGTACATCTCTCTTTGTACGACAATCATCTGGTGGGGAGCATTCGGTCATCTCTATTTTCTCTTCCCTTGTTGCCGTACTTATTACTTTCTGATAATAATTTCTCTGGGCAACTCCCTGAAACTTTTAACGTCTCTTCTAGTTTTCTTACTTCCATTGATTTGAGTTTCAATCATTTGGAAGGACCAGTTCCCATGTCTATCTTCAATATTCGAGGGCTTGAAACCCTCACTCTTTCTTCAAACAATTTCAGTGCCTTTCCTTTTAATTGTCCTCAGCTGCCAAATCTGACGGAGATTGATCTTTCACACAATAGCTTGAGAACATTCCCAGTTTTCTTAAGAAATCAAACCTATTTAACAAAGTTGGATCTTTCGGAAAACCAAATTCAAGGCCAGCTACCCAATTGGATATGGAAGCTCGATTCTCTTGATTACCTAAATGTTTCTCATAATGCCTTGGAAAGTCTCGAAGGTCCTTTCATCAACCCCACATCTTCTATGTCTAGGCTTGACCTTCATTCAAACCAGCTTAAGGGGCCAATTTTAATTGTCCCACCAAATGCCGAATATCTGGATTACTCAAAGAATCATTTCAGTTCTAGTATTCCAGTATCAATATGCTATGCAACAAGTCTTCTCGCTCTTGATTTGTCCAGTAATTCTCTGAGTGGTGAGATTCCCCAGTGCTTGGCTGCAATGAGCAGACTCGTGATACTTAATGTCAGGAAAAACAACATTACTGGAATGATTTCTAATCTTGAATTTCCTGAAAATTGTGAGTCATTACAAGCTCTAGACCTCAGCCAAAATCAGATTGAAGGTCAATTTCCAAAGTCTCTAGCCAGGTGCAGATGGTTAAAATTTTTAAACCTTGCAGAGAATCAGATAACAGACACCTTCCCATGCTTGTTAAAGAACATCTCTGACTTGAGGGTTCTTGCTTTGCGGTCCAACAATTTCTATGGGGGCATTGGATGTCCAGTAGTGAAGACCAATGCCACCTGGTCAGCTCTTCAAATCATAGACTTAGCTTACAACAATTTCAATGGTGAAGTACCAGGATTCCCTCTGACAACATGGCAAGCAATGAAGGGTAACAGAGATATTAGTGATTCTAACTATATAGAGTTATCTTCTCTTGGGCATGGGCATATATCCACTTCTACGAGTGCGGCTCTAAATCCTAATGAACCTGCGTACGGTGATCGCGCAGTGTTTACATTTTCTTATGAGCCTGCTATAACGATTACAAGCAAAGGTTTAAAGTGGGATCTGGCAAAGATTATAAGTGTCTTGACCTTGATTGACTTCTCATGCAACAATTTCAGTGGGTCAATTCCCAAGGAAATGGGAGCTCTGAAATCTTTATATTTTCTCAACTTGTCGAGTAATGCTTTCACAGGTGAAATCCCATCGTCATTTGGTAACATGCGACAACTCGAGTCCTTGGACCTGTCACATAACAAGCTGAGCGGGCAAATCCCACAACAGCTGGCAAATCTTAGTTTCCTTGCATTCCTGAATCTCTCGAATAATCAACTTGTCGGCAAGATCCCAGCTGGTACTCAAATTTCAACATTTCCAAGAGACTCATTTACGGGGAACAAAAGGTTATGGGGGCCTCCGCTGACGGTGGATAATAAAGCAGGACTGTCACCACCACCATTAAATGGAAGCCGTCCAAATTCTACAAATGAGATTGATTGGGATCTTATTAGTGTCGAAATTGGATTTGTATTTGGCTTTGCAGTTGCTGTTGGGTCACTTGTGTTCTTCAAGAGATGGAGTAAATGGTATTACAGGGCTATGTATAAAATCCTTGTGAGGATATTCCCTCAGCTTGAAGAAAGAATTGGTCCTCATCGAAGACATGTTCACATAAATCAGAGGTGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1073

Amino Acids

119.02

Weight (kDa)

8.28

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 137 - 181 3.4e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 197 - 350 3.4e-09 Leucine-rich repeat region
LRR_8 PF13855 288 - 328 3.5e-06 Leucine rich repeat
LRR_14 PF23598 365 - 445 4.5e-08 Leucine-rich repeat region
LRR_8 PF13855 488 - 545 5.8e-06 Leucine rich repeat
LRR_8 PF13855 533 - 592 4.8e-09 Leucine rich repeat
LRR_14 PF23598 880 - 949 4.4e-06 Leucine-rich repeat region
LRR_8 PF13855 910 - 953 1.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2603
Acc36I ACCTGC 1 cut(s) 2518
Acc65I GGTACC 1 cut(s) 1015
AccB1I GGYRCC 1 cut(s) 1015
AccB7I CCANNNNNTGG 2 cut(s) 2005, 2987
AccBSI CCGCTC 1 cut(s) 2790
AccI GTMKAC 1 cut(s) 393
AccII CGCG 2 cut(s) 1256, 2526
AciI CCGC 7 cut(s) 679, 826, 1116, 2263, 2489, 2790, 2942
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 8 cut(s) 724, 753, 1076, 1701, 2078, 2177, 2886, 3001
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 9 cut(s) 18, 508, 1017, 1320, 1334, 1394, 2373, 2516, 2881
AfiI CCNNNNNNNGG 8 cut(s) 649, 819, 926, 1088, 1849, 2005, 2516, 2987
AflII CTTAAG 2 cut(s) 1654, 1847
AflIII ACRYGT 4 cut(s) 1164, 1254, 1266, 3187
AjnI CCWGG 4 cut(s) 925, 2159, 2318, 2374
AjuI GAANNNNNNNTTGG 2 cut(s) 3153, 3185
Alw21I GWGCWC 1 cut(s) 2674
Alw26I GTCTC 7 cut(s) 569, 620, 1453, 1787, 2157, 2898, 3205
AlwNI CAGNNNCTG 2 cut(s) 421, 3071
Ama87I CYCGRG 2 cut(s) 589, 2756
AoxI GGCC 7 cut(s) 37, 269, 346, 651, 1708, 1853, 2936
ApeKI GCWGC 3 cut(s) 576, 1594, 2009
ApoI RAATTY 8 cut(s) 724, 753, 1076, 1701, 2078, 2177, 2886, 3001
AseI ATTAAT 1 cut(s) 1311
Asp700I GAANNNNTTC 3 cut(s) 79, 1907, 2065
Asp718I GGTACC 1 cut(s) 1015
AspLEI GCGC 1 cut(s) 2528
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 5 cut(s) 2000, 2378, 2531, 2732, 2964
AsuNHI GCTAGC 1 cut(s) 316
AvaI CYCGRG 2 cut(s) 589, 2756
AvaII GGWCC 7 cut(s) 823, 1277, 1499, 1790, 2265, 2767, 3173
BaeI ACNNNNGTAYC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 1015
BanII GRGCYC 1 cut(s) 2674
BauI CACGAG 1 cut(s) 2024
BbsI GAAGAC 3 cut(s) 1943, 2312, 3190
Bbv12I GWGCWC 1 cut(s) 2674
BbvCI CCTCAGC 3 cut(s) 1590, 2117, 3153
BbvI GCAGC 3 cut(s) 588, 1581, 1996
BccI CCATC 5 cut(s) 77, 694, 2163, 2737, 3093
BceAI ACGGC 2 cut(s) 1375, 2979
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 4 cut(s) 927, 2161, 2320, 2376
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 7 cut(s) 569, 620, 1453, 1787, 2157, 2898, 3205
BfaI CTAG 7 cut(s) 317, 1178, 1455, 1821, 1917, 2111, 2156
BfmI CTRYAG 1 cut(s) 394
BfrI CTTAAG 2 cut(s) 1654, 1847
BfuAI ACCTGC 1 cut(s) 2518
BglII AGATCT 1 cut(s) 1005
BisI GCNGC 4 cut(s) 577, 1595, 2010, 2490
BlpI GCTNAGC 1 cut(s) 2786
BlsI GCNGC 4 cut(s) 578, 1596, 2011, 2491
Bme1390I CCNGG 5 cut(s) 36, 927, 2161, 2320, 2376
Bme18I GGWCC 7 cut(s) 823, 1277, 1499, 1790, 2265, 2767, 3173
BmeT110I CYCGRG 2 cut(s) 589, 2756
BmiI GGNNCC 7 cut(s) 676, 824, 924, 1017, 1066, 1854, 2937
BmrFI CCNGG 5 cut(s) 36, 927, 2161, 2320, 2376
BmrI ACTGGG 4 cut(s) 478, 1306, 1640, 1993
BmsI GCATC 1 cut(s) 640
BmtI GCTAGC 1 cut(s) 320
BmuI ACTGGG 4 cut(s) 478, 1306, 1640, 1993
BpiI GAAGAC 3 cut(s) 1943, 2312, 3190
BplI GAGNNNNNCTC 2 cut(s) 2476, 2508
BpmI CTGGAG 2 cut(s) 408, 592
Bpu10I CCTNAGC 3 cut(s) 1590, 2117, 3153
Bpu1102I GCTNAGC 1 cut(s) 2786
BpuEI CTTGAG 4 cut(s) 307, 733, 1654, 2266
BpuMI CCSGG 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 3024
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 5 cut(s) 34, 117, 1773, 2658, 2763
BsaWI WCCGGW 1 cut(s) 919
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 8 cut(s) 649, 819, 926, 1088, 1849, 2005, 2516, 2987
Bse3DI GCAATG 4 cut(s) 178, 425, 2019, 2409
Bse8I GATNNNNATC 1 cut(s) 3024
BseBI CCWGG 4 cut(s) 927, 2161, 2320, 2376
BseDI CCNNGG 5 cut(s) 34, 117, 1773, 2658, 2763
BseGI GGATG 1 cut(s) 2297
BseJI GATNNNNATC 1 cut(s) 3024
BseLI CCNNNNNNNGG 8 cut(s) 649, 819, 926, 1088, 1849, 2005, 2516, 2987
BseMI GCAATG 4 cut(s) 178, 425, 2019, 2409
BseMII CTCAG 6 cut(s) 66, 1604, 1973, 2131, 2777, 3167
BseXI GCAGC 3 cut(s) 588, 1581, 1996
BseYI CCCAGC 1 cut(s) 2872
BsgI GTGCAG 1 cut(s) 2185
Bsh1236I CGCG 2 cut(s) 1256, 2526
BshFI GGCC 7 cut(s) 39, 271, 348, 653, 1710, 1855, 2938
BshNI GGYRCC 1 cut(s) 1015
BsiHKAI GWGCWC 1 cut(s) 2674
BsiHKCI CYCGRG 2 cut(s) 589, 2756
BsiSI CCGG 2 cut(s) 36, 920
BsiWI CGTACG 1 cut(s) 2514
BslFI GGGAC 4 cut(s) 266, 836, 1132, 1853
BslI CCNNNNNNNGG 8 cut(s) 649, 819, 926, 1088, 1849, 2005, 2516, 2987
BsmAI GTCTC 7 cut(s) 569, 620, 1453, 1787, 2157, 2898, 3205
BsmBI CGTCTC 2 cut(s) 1453, 3205
BsmFI GGGAC 4 cut(s) 266, 836, 1132, 1853
BsmI GAATGC 3 cut(s) 681, 1356, 2831
BsnI GGCC 7 cut(s) 39, 271, 348, 653, 1710, 1855, 2938
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 2 cut(s) 589, 2756
Bsp1286I GDGCHC 1 cut(s) 2674
Bsp1720I GCTNAGC 1 cut(s) 2786
BspACI CCGC 7 cut(s) 679, 826, 1116, 2263, 2489, 2790, 2942
BspANI GGCC 7 cut(s) 39, 271, 348, 653, 1710, 1855, 2938
BspCNI CTCAG 6 cut(s) 65, 1603, 1974, 2130, 2778, 3166
BspFNI CGCG 2 cut(s) 1256, 2526
BspLI GGNNCC 7 cut(s) 676, 824, 924, 1017, 1066, 1854, 2937
BspMI ACCTGC 1 cut(s) 2518
BspOI GCTAGC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 2334
BspT107I GGYRCC 1 cut(s) 1015
BspTI CTTAAG 2 cut(s) 1654, 1847
BspTNI GGTCTC 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 2790
BsrDI GCAATG 4 cut(s) 178, 425, 2019, 2409
BssECI CCNNGG 5 cut(s) 34, 117, 1773, 2658, 2763
BssSI CACGAG 1 cut(s) 2024
BssT1I CCWWGG 3 cut(s) 1773, 2658, 2763
Bst2BI CACGAG 1 cut(s) 2024
Bst2UI CCWGG 4 cut(s) 927, 2161, 2320, 2376
Bst4CI ACNGT 8 cut(s) 28, 196, 423, 515, 886, 2519, 2950, 2970
Bst6I CTCTTC 5 cut(s) 623, 1101, 1383, 1456, 2334
BstAFI CTTAAG 2 cut(s) 1654, 1847
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 8 cut(s) 318, 830, 857, 1712, 2400, 2553, 2792, 2811
BstDEI CTNAG 9 cut(s) 52, 968, 1590, 1982, 2117, 2344, 2786, 2819, 3153
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 2297
BstFNI CGCG 2 cut(s) 1256, 2526
BstHHI GCGC 1 cut(s) 2528
BstMAI GTCTC 7 cut(s) 569, 620, 1453, 1787, 2157, 2898, 3205
BstMWI GCNNNNNNNGC 5 cut(s) 98, 603, 1122, 1852, 2791
BstNI CCWGG 4 cut(s) 927, 2161, 2320, 2376
BstNSI RCATGY 5 cut(s) 859, 1168, 1270, 2749, 3191
BstSCI CCNGG 5 cut(s) 34, 925, 2159, 2318, 2374
BstSFI CTRYAG 1 cut(s) 394
BstSNI TACGTA 1 cut(s) 16
BstUI CGCG 2 cut(s) 1256, 2526
BstV1I GCAGC 3 cut(s) 588, 1581, 1996
BstV2I GAAGAC 3 cut(s) 1943, 2312, 3190
BstX2I RGATCY 8 cut(s) 148, 789, 1005, 1091, 1684, 2587, 2868, 3025
BstXI CCANNNNNNTGG 1 cut(s) 2665
BstYI RGATCY 8 cut(s) 148, 789, 1005, 1091, 1684, 2587, 2868, 3025
BsuRI GGCC 7 cut(s) 39, 271, 348, 653, 1710, 1855, 2938
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 2297
BtsI GCAGTG 1 cut(s) 2535
BtsIMutI CAGTG 8 cut(s) 185, 407, 1200, 1294, 1573, 2006, 2535, 2650
BveI ACCTGC 1 cut(s) 2518
Cac8I GCNNGC 8 cut(s) 318, 830, 857, 1712, 2400, 2553, 2792, 2811
CaiI CAGNNNCTG 2 cut(s) 421, 3071
CfoI GCGC 1 cut(s) 2528
CseI GACGC 2 cut(s) 1245, 1262
CsiI ACCWGGT 1 cut(s) 2318
Csp6I GTAC 9 cut(s) 17, 507, 1016, 1319, 1333, 1393, 2372, 2515, 2880
CspCI CAANNNNNGTGG 2 cut(s) 2626, 2661
CviQI GTAC 9 cut(s) 17, 507, 1016, 1319, 1333, 1393, 2372, 2515, 2880
DdeI CTNAG 9 cut(s) 52, 968, 1590, 1982, 2117, 2344, 2786, 2819, 3153
DraI TTTAAA 2 cut(s) 2184, 2580
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 5 cut(s) 623, 1101, 1383, 1456, 2334
EarI CTCTTC 5 cut(s) 623, 1101, 1383, 1456, 2334
Ecl136II GAGCTC 1 cut(s) 2672
Eco105I TACGTA 1 cut(s) 16
Eco130I CCWWGG 3 cut(s) 1773, 2658, 2763
Eco24I GRGCYC 1 cut(s) 2674
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 7 cut(s) 823, 1277, 1499, 1790, 2265, 2767, 3173
Eco53kI GAGCTC 1 cut(s) 2672
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 2 cut(s) 589, 2756
EcoICRI GAGCTC 1 cut(s) 2672
EcoO109I RGGNCCY 2 cut(s) 1790, 2936
EcoRII CCWGG 4 cut(s) 925, 2159, 2318, 2374
EcoT14I CCWWGG 3 cut(s) 1773, 2658, 2763
EcoT38I GRGCYC 1 cut(s) 2674
ErhI CCWWGG 3 cut(s) 1773, 2658, 2763
Esp3I CGTCTC 2 cut(s) 1453, 3205
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 4 cut(s) 266, 836, 1132, 1853
FauI CCCGC 3 cut(s) 686, 1109, 2783
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 577, 1595, 2010, 2490
FokI GGATG 1 cut(s) 2304
FriOI GRGCYC 1 cut(s) 2674
Fsp4HI GCNGC 4 cut(s) 577, 1595, 2010, 2490
FspBI CTAG 7 cut(s) 317, 1178, 1455, 1821, 1917, 2111, 2156
GlaI GCGC 1 cut(s) 2527
GluI GCNGC 4 cut(s) 577, 1595, 2010, 2490
GsaI CCCAGC 1 cut(s) 2876
GsuI CTGGAG 2 cut(s) 408, 592
HaeIII GGCC 7 cut(s) 39, 271, 348, 653, 1710, 1855, 2938
HapII CCGG 2 cut(s) 36, 920
HgaI GACGC 2 cut(s) 1245, 1262
HhaI GCGC 1 cut(s) 2528
Hin6I GCGC 1 cut(s) 2526
HinP1I GCGC 1 cut(s) 2526
HincII GTYRAC 1 cut(s) 954
HindII GTYRAC 1 cut(s) 954
HindIII AAGCTT 1 cut(s) 1123
HpaII CCGG 2 cut(s) 36, 920
HphI GGTGA 5 cut(s) 2000, 2378, 2531, 2732, 2964
Hpy166II GTNNAC 6 cut(s) 58, 394, 954, 1173, 2535, 3193
Hpy8I GTNNAC 6 cut(s) 58, 394, 954, 1173, 2535, 3193
HpyAV CCTTC 7 cut(s) 665, 1490, 1781, 1841, 2129, 2224, 2401
HpyCH4III ACNGT 8 cut(s) 28, 196, 423, 515, 886, 2519, 2950, 2970
HpyCH4IV ACGT 3 cut(s) 15, 1446, 3214
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 603, 1122, 1852, 2791
HpyF3I CTNAG 9 cut(s) 52, 968, 1590, 1982, 2117, 2344, 2786, 2819, 3153
HpySE526I ACGT 3 cut(s) 15, 1446, 3214
HspAI GCGC 1 cut(s) 2526
KpnI GGTACC 1 cut(s) 1019
LguI GCTCTTC 1 cut(s) 2334
LmnI GCTCC 6 cut(s) 435, 611, 680, 922, 1353, 2669
Lsp1109I GCAGC 3 cut(s) 588, 1581, 1996
LweI GCATC 1 cut(s) 640
MabI ACCWGGT 1 cut(s) 2318
MaeI CTAG 7 cut(s) 317, 1178, 1455, 1821, 1917, 2111, 2156
MaeII ACGT 3 cut(s) 15, 1446, 3214
MaeIII GTNAC 9 cut(s) 190, 379, 532, 981, 2411, 2741, 2772, 2970, 3078
MbiI CCGCTC 1 cut(s) 2790
MfeI CAATTG 4 cut(s) 693, 1149, 1221, 1720
MflI RGATCY 8 cut(s) 148, 789, 1005, 1091, 1684, 2587, 2868, 3025
MhlI GDGCHC 1 cut(s) 2674
MluI ACGCGT 1 cut(s) 1254
MlyI GAGTC 7 cut(s) 237, 399, 1139, 2016, 2105, 2768, 2900
MmeI TCCRAC 3 cut(s) 765, 1662, 2292
MroXI GAANNNNTTC 3 cut(s) 79, 1907, 2065
MspA1I CMGCKG 4 cut(s) 1594, 2809, 2876, 2944
MspCI CTTAAG 2 cut(s) 1654, 1847
MspI CCGG 2 cut(s) 36, 920
MspR9I CCNGG 5 cut(s) 36, 927, 2161, 2320, 2376
MunI CAATTG 4 cut(s) 693, 1149, 1221, 1720
Mva1269I GAATGC 3 cut(s) 681, 1356, 2831
MvaI CCWGG 4 cut(s) 927, 2161, 2320, 2376
MvnI CGCG 2 cut(s) 1256, 2526
MwoI GCNNNNNNNGC 5 cut(s) 98, 603, 1122, 1852, 2791
NciI CCSGG 1 cut(s) 36
NheI GCTAGC 1 cut(s) 316
NlaIV GGNNCC 7 cut(s) 676, 824, 924, 1017, 1066, 1854, 2937
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 4 cut(s) 379, 2772, 2970, 3078
NspI RCATGY 5 cut(s) 859, 1168, 1270, 2749, 3191
PaeI GCATGC 1 cut(s) 859
PaeR7I CTCGAG 1 cut(s) 2756
PciI ACATGT 3 cut(s) 1164, 1266, 3187
PciSI GCTCTTC 1 cut(s) 2334
PctI GAATGC 3 cut(s) 681, 1356, 2831
PdmI GAANNNNTTC 3 cut(s) 79, 1907, 2065
Pfl23II CGTACG 1 cut(s) 2514
PflMI CCANNNNNTGG 2 cut(s) 2005, 2987
PfoI TCCNGGA 1 cut(s) 925
PkrI GCNGC 4 cut(s) 578, 1596, 2011, 2491
PleI GAGTC 7 cut(s) 237, 398, 1139, 2016, 2104, 2767, 2900
PpsI GAGTC 7 cut(s) 237, 398, 1139, 2016, 2104, 2767, 2900
Ppu21I YACGTR 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 1790
PscI ACATGT 3 cut(s) 1164, 1266, 3187
PshBI ATTAAT 1 cut(s) 1311
PsiI TTATAA 1 cut(s) 2603
Psp124BI GAGCTC 1 cut(s) 2674
Psp5II RGGWCCY 1 cut(s) 1790
Psp6I CCWGG 4 cut(s) 925, 2159, 2318, 2374
PspFI CCCAGC 1 cut(s) 2872
PspGI CCWGG 4 cut(s) 925, 2159, 2318, 2374
PspLI CGTACG 1 cut(s) 2514
PspN4I GGNNCC 7 cut(s) 676, 824, 924, 1017, 1066, 1854, 2937
PspPPI RGGWCCY 1 cut(s) 1790
PspXI VCTCGAGB 1 cut(s) 2756
PstNI CAGNNNCTG 2 cut(s) 421, 3071
PsuI RGATCY 8 cut(s) 148, 789, 1005, 1091, 1684, 2587, 2868, 3025
PvuII CAGCTG 3 cut(s) 1594, 2809, 2876
RsaI GTAC 9 cut(s) 18, 508, 1017, 1320, 1334, 1394, 2373, 2516, 2881
RsaNI GTAC 9 cut(s) 17, 507, 1016, 1319, 1333, 1393, 2372, 2515, 2880
SacI GAGCTC 1 cut(s) 2674
SapI GCTCTTC 1 cut(s) 2334
SatI GCNGC 4 cut(s) 577, 1595, 2010, 2490
SchI GAGTC 7 cut(s) 237, 399, 1139, 2016, 2105, 2768, 2900
ScrFI CCNGG 5 cut(s) 36, 927, 2161, 2320, 2376
SduI GDGCHC 1 cut(s) 2674
SexAI ACCWGGT 1 cut(s) 2318
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 394
Sfr274I CTCGAG 1 cut(s) 2756
SinI GGWCC 7 cut(s) 823, 1277, 1499, 1790, 2265, 2767, 3173
SlaI CTCGAG 1 cut(s) 2756
SmlI CTYRAG 7 cut(s) 286, 712, 1633, 1654, 1847, 2245, 2756
SmoI CTYRAG 7 cut(s) 286, 712, 1633, 1654, 1847, 2245, 2756
SnaBI TACGTA 1 cut(s) 16
SphI GCATGC 1 cut(s) 859
SsiI CCGC 7 cut(s) 679, 826, 1116, 2263, 2489, 2790, 2942
SspI AATATT 1 cut(s) 1525
SspMI CTAG 7 cut(s) 317, 1178, 1455, 1821, 1917, 2111, 2156
SstI GAGCTC 1 cut(s) 2674
StyD4I CCNGG 5 cut(s) 34, 925, 2159, 2318, 2374
StyI CCWWGG 3 cut(s) 1773, 2658, 2763
TaaI ACNGT 8 cut(s) 28, 196, 423, 515, 886, 2519, 2950, 2970
TaiI ACGT 3 cut(s) 18, 1449, 3217
TaqII GACCGA 1 cut(s) 1350
TatI WGTACW 1 cut(s) 506
TauI GCSGC 1 cut(s) 2492
TscAI CASTG 8 cut(s) 192, 407, 1207, 1301, 1573, 2006, 2535, 2650
TseFI GTSAC 4 cut(s) 379, 2772, 2970, 3078
TseI GCWGC 3 cut(s) 576, 1594, 2009
Tsp45I GTSAC 4 cut(s) 379, 2772, 2970, 3078
TspDTI ATGAA 7 cut(s) 152, 282, 341, 1786, 1823, 2420, 2520
TspGWI ACGGA 3 cut(s) 915, 1067, 1622
TspRI CASTG 8 cut(s) 192, 407, 1207, 1301, 1573, 2006, 2535, 2650
Van91I CCANNNNNTGG 2 cut(s) 2005, 2987
Vha464I CTTAAG 2 cut(s) 1654, 1847
VpaK11BI GGWCC 7 cut(s) 823, 1277, 1499, 1790, 2265, 2767, 3173
VspI ATTAAT 1 cut(s) 1311
XapI RAATTY 8 cut(s) 724, 753, 1076, 1701, 2078, 2177, 2886, 3001
XbaI TCTAGA 1 cut(s) 2110
XceI RCATGY 5 cut(s) 859, 1168, 1270, 2749, 3191
XhoI CTCGAG 1 cut(s) 2756
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 3 cut(s) 79, 1907, 2065
XspI CTAG 7 cut(s) 317, 1178, 1455, 1821, 1917, 2111, 2156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.