Rroxscaffold_6G00417470

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000047
Physical Location & Seq
Forward (+)
39183987 .. 39187604
3618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417470.1

Sequence Viewer

Length: 3126 bp
ATGACAATTCCTTTGTTCTCATGCCATTTCTTAATACTCATTTACTATGTTTCACTCAGTGTCCTTATACTGGTGGTCTCTGGCCAATGTGACAGCAACCAACAGCAATCTTTGCTGCTCCAATTGAAGAAAAGACTCAATTTCGACTCTGCATTATCCACAAAACTTGTGAAGTGGAATACTGCTTCAGATTACTGTTCTTGGGAAGGTGTTTCCTGCAAGCAGGGTTGTGTTAACCATCTTGACTTGAGCAACGAATCTATTTTGGGTGGACTTGATAATTCAAGTGCTCTTTTCAGTCTGCAGGACATCGAACACCTGAATTTGGCCTATAATAACTTCAATTATACTCCGATTCCATCCGAGTTCAACAAGCTAGCCAGTTTGAGTTATTTGAACCTGTCAAATGCTGGCTTTTCCGGGCACATTCCCATTGAGATTTCTCAGTTGACAAGGTTGGTGTTTCTTGATTTATCTACTTTCTACTTTCCCGGAACTCCTGCACTGCAACTTAAGCATCCAGATTTGAATTTGCTTATTGGAAACCTTAAGGAGATAATCGAACTTCATCTTGATGGTGTGAACATATCAGCACAGGGAGCTCAGTGGGGTCAAGCAATATCATCTTCACTGCCAAACCTGAGAGTGTTGAGCTTGTCCAGTTGCAATCTTTCAGGCCCAATTGATACTTCCTTACTGAAGCTTCAATCACTCTCAGAAATTCGTATAGAGAGTAACAATCTGTCTACTGCAGTTCCAGCGTTCTCGTCAAATTTCACAAATTTGACTTCTTTACGCCTCATGAATTCAGGGTTACATGGTACATTCCCAGAGAAGATCTTTCAGGTACCTACACTGCAGATTATCGACTTAATTGGCAATAAAGAGCTACGAGGTTCGTTGCCAGACTTTTCGAAAAATGGAGCTGTTCGGTCCTTGTTCCTAGCCGGGACAGCTTTTTCAGGGTTATTGCCGGAATCTATTGGAAACCTCAAGATGTTGTCCAAAGTAGATCTTTCAAATTGCAGCTTCACGGGACCAATCCCAAAGTCAATGGAAAGCCTTACGGAACTGGTTTATGTGGACATGTCAGCGAACAAGCTTAATGGTTCTGTTCCATTGTTGAGTATGGCCAAGAATCTGACCAACATAAATCTTTCTCACAATGTGCTAGAAGGTCAGATTAACTCTACTCACTGGCAAAATCTTACAAATCTGGTCTATCTCAACTTGGCTAACAATAAACTGGATGGCAGTATTCCATCGTCTCTATTTAATCTTCCCTCGCTGAAGCAACTACTGCTCTCCAACAATCAGTTCTCTGGTCAGTTGCTTGAATTTGCCAACATCTCTTCTAACCCTCTTGAAACACTTGATTTGAGTAGCAACAACTTGGAAGGGCCGGTACCCAGGTCTATCTTCAATTTCCAACGGCTGAAAATCCTTTCACTTTCTTCAAACAACTTCAATGGCTCCTTCCCTCTCAACAGTGCCCAACAGCTCCAAAATCTTTCGAGTCTTGATCTTTCATATAATAGTTTGTTGATTAGTTATAATAGTATCAATTCCTCGCAGTCTTCCTTTCCTCAGATTACCACATTGAAGTTGGCTTCAGGCAAGTTGAGAACATTCCCTGATTTCTTGAGAAGCCAATCCAAATTAAGCACTCTAGATCTTTCACTAAACCAGATTCATGGAGAGATACCCAACTGGGTTTGGAAGCTCAGTAGTCTTGCTCAGCTAAATCTTTCTTGCAATTCCCTGGTAACTCTAGAAGGTCCTTTATCCAATCTTGCTTCTAGTTTGTCTGTTCTTGACCTTCATTCAAACCAGCTTCAGGGACAAGTCCCAATTTTTCCACCATTTGCCACTTACCTGGATTACTCAAGAAATAATTTCACCTCTATCCTACCGGCTGACATTGGTGATTTCCTTAATTACACCATGTTCTTGTCTCTTTCAAGCAACAAAATTGAGGGGAGCATTCCAGGATCAATATGCAATGCGTCATATCTTCAGGTTCTTGATCTGTCCAATAATTCTTTCAGTGGCTATGTTCCCCAGTGCTTGACTGCAATAAGTGGAAGTCTTGTAGTACTTAATTTAAGGAGAAACAAACTTGCTGGGACTATTCCCGACAGATTTCCTGGCCATTGTAGTCTGAAAACTCTAGACTTCAATGGAAATCGTCTAGAAGGTCAGTTTCCAAAATCTCTAGCCAATTGCACATTGTTAGAAGTTCTGAACCTTGGAAACAATCAGATTACAGATACATTTCCATGCTTGTTGAAGAGCATCTCCACCTTGCGTGTCCTTGTTTTGCGATCAAACAGATTTTATAGACGCATTGGATGTCCCAACACCACTGGTACCTGGCCACTGCTTCAAATTTTTGACATAGCACACAACAACTTTAGTGGTGAAATACCAAAAAAAAGCTTGACTACATGGCAGGCAATGATGGGCAACGAAGATGATGCCCAGTCAAAGATCAATTTCCTGCAATTTCGAGTCCTAATAGTCAGTGACTTAAATTATCAGGATGCTATAACAGTTACCACCAAAGGACTAGAGATGGAGTTGGTCAAGATTCTAACTGTCTTCACCTCTATTGACATCTCGTGCAACAATTTCAATGGATTAATACCGGCACAAGTGGGACAACTAAAAGCGCTCCATGGCCTCAACTTGTCCAACAATGCTCTCACAGGCCCTATTCCACCATCATTGAGTAACCTGACACAACTCGAGTCCTTGGACCTTTCAAACAACAGCCTGAGAGGGCCAATTCCACCAGGGCTTGCAGCGCTTACTTTCCTTTCATTCTTGAATCTCTCAGATAATCAACTGGTGGGGAGGATACCAACTGGTAATCAGTTTTCAACATTTTCTCCATCTTCCTATGAAGATAATGAAGGATTATGTGGGACACCTTTGGCTGTAAGCTGCAGCAATACCAGCTACTCACCAGATGCAACTTCAATGGTTGAAAACAAAGAGATGGAGGATATGGTATTACAAAAGTATGCAGAGCATCCTCTTCAAGATATTTCCTCAGCTGGAAGAAAGATTTGGGGATCACACAAGGCATGTTTACGTAAATCCAAGCTGGAGGCGTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1041

Amino Acids

113.96

Weight (kDa)

6.27

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 73 7.7e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 97 - 291 1.6e-07 Leucine-rich repeat region
LRR_8 PF13855 380 - 440 1.2e-06 Leucine rich repeat
LRR_8 PF13855 455 - 514 4.4e-06 Leucine rich repeat
LRR_8 PF13855 696 - 755 3.4e-06 Leucine rich repeat
LRR_4 PF12799 720 - 758 3.9e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 869 - 926 4.1e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1554
Acc65I GGTACC 3 cut(s) 847, 1405, 2369
AccB1I GGYRCC 3 cut(s) 847, 1405, 2369
AccI GTMKAC 1 cut(s) 746
AclWI GGATC 2 cut(s) 1999, 3085
AcoI YGGCCR 4 cut(s) 82, 1131, 2149, 2375
AcsI RAATTY 8 cut(s) 322, 529, 720, 772, 781, 805, 1337, 2388
AcuI CTGAAG 6 cut(s) 171, 719, 1310, 1596, 1820, 2000
AdeI CACNNNGTG 2 cut(s) 59, 1168
AfaI GTAC 5 cut(s) 823, 849, 1407, 2097, 2371
AfeI AGCGCT 2 cut(s) 2673, 2808
AfiI CCNNNNNNNGG 3 cut(s) 70, 325, 1837
AflII CTTAAG 2 cut(s) 512, 548
AflIII ACRYGT 1 cut(s) 1086
AjnI CCWGG 7 cut(s) 1409, 1761, 1875, 1987, 2146, 2372, 2794
AjuI GAANNNNNNNTTGG 8 cut(s) 673, 705, 1301, 1333, 2027, 2059, 3055, 3087
Alw21I GWGCWC 2 cut(s) 292, 604
Alw26I GTCTC 3 cut(s) 82, 1272, 1959
AlwI GGATC 2 cut(s) 1999, 3085
Ama87I CYCGRG 1 cut(s) 2747
Aor51HI AGCGCT 2 cut(s) 2673, 2808
ApeKI GCWGC 5 cut(s) 115, 1026, 2804, 2946, 2949
ApoI RAATTY 8 cut(s) 322, 529, 720, 772, 781, 805, 1337, 2388
ArsI GACNNNNNNTTYG 1 cut(s) 27
AseI ATTAAT 1 cut(s) 2642
Asp718I GGTACC 3 cut(s) 847, 1405, 2369
AspLEI GCGC 2 cut(s) 2674, 2809
AspS9I GGNCC 8 cut(s) 677, 933, 1037, 1400, 1778, 2711, 2758, 2783
AsuC2I CCSGG 3 cut(s) 421, 492, 949
AsuHPI GGTGA 5 cut(s) 1891, 1937, 2432, 2596, 2958
AsuII TTCGAA 1 cut(s) 914
AsuNHI GCTAGC 1 cut(s) 376
AvaI CYCGRG 1 cut(s) 2747
AvaII GGWCC 4 cut(s) 933, 1037, 1778, 2758
BaeGI GKGCMC 2 cut(s) 426, 1495
BaeI ACNNNNGTAYC 2 cut(s) 1397, 1430
BalI TGGCCA 4 cut(s) 84, 1133, 2151, 2377
BanI GGYRCC 3 cut(s) 847, 1405, 2369
BanII GRGCYC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 1389, 1421
BauI CACGAG 1 cut(s) 2620
BbsI GAAGAC 2 cut(s) 1569, 2593
Bbv12I GWGCWC 2 cut(s) 292, 604
BbvCI CCTCAGC 1 cut(s) 3055
BbvI GCAGC 5 cut(s) 102, 1038, 2816, 2933, 2961
BceAI ACGGC 1 cut(s) 1448
BcgI CGANNNNNNTGC 2 cut(s) 2459, 2493
BciT130I CCWGG 7 cut(s) 1411, 1763, 1877, 1989, 2148, 2374, 2796
BciVI GTATCC 1 cut(s) 2853
BcnI CCSGG 3 cut(s) 421, 492, 949
BcoDI GTCTC 3 cut(s) 82, 1272, 1959
BfmI CTRYAG 4 cut(s) 302, 750, 857, 2947
BfoI RGCGCY 2 cut(s) 2675, 2810
BfrI CTTAAG 2 cut(s) 512, 548
BfuI GTATCC 1 cut(s) 2853
BglII AGATCT 3 cut(s) 837, 1012, 1672
BisI GCNGC 5 cut(s) 116, 1027, 2805, 2947, 2950
BlpI GCTNAGC 1 cut(s) 1737
BlsI GCNGC 5 cut(s) 117, 1028, 2806, 2948, 2951
BmcAI AGTACT 1 cut(s) 2097
Bme18I GGWCC 4 cut(s) 933, 1037, 1778, 2758
BmeT110I CYCGRG 1 cut(s) 2747
BmgT120I GGNCC 8 cut(s) 677, 933, 1037, 1400, 1778, 2711, 2758, 2783
BmiI GGNNCC 5 cut(s) 849, 1038, 1407, 1474, 2371
BmrI ACTGGG 3 cut(s) 1720, 2056, 2476
BmsI GCATC 6 cut(s) 526, 2304, 2467, 2533, 2962, 3043
BmtI GCTAGC 1 cut(s) 380
BmuI ACTGGG 3 cut(s) 1720, 2056, 2476
BpiI GAAGAC 2 cut(s) 1569, 2593
Bpu10I CCTNAGC 1 cut(s) 3055
Bpu1102I GCTNAGC 1 cut(s) 1737
Bpu14I TTCGAA 1 cut(s) 914
BpuEI CTTGAG 4 cut(s) 268, 977, 1663, 1870
BpuMI CCSGG 3 cut(s) 421, 492, 949
BsaAI YACGTR 1 cut(s) 3098
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 6 cut(s) 1409, 1761, 2248, 2677, 2754, 2795
BsaXI ACNNNNNCTCC 2 cut(s) 2875, 2905
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 325, 1837
Bse118I RCCGGY 3 cut(s) 1402, 1912, 2647
Bse3DI GCAATG 2 cut(s) 2008, 2463
BseBI CCWGG 7 cut(s) 1411, 1763, 1877, 1989, 2148, 2374, 2796
BseDI CCNNGG 6 cut(s) 1409, 1761, 2248, 2677, 2754, 2795
BseGI GGATG 6 cut(s) 359, 517, 1255, 2357, 2548, 3034
BseLI CCNNNNNNNGG 3 cut(s) 70, 325, 1837
BseMI GCAATG 2 cut(s) 2008, 2463
BseSI GKGCMC 2 cut(s) 426, 1495
BseXI GCAGC 5 cut(s) 102, 1038, 2816, 2933, 2961
BseYI CCCAGC 1 cut(s) 2123
BsgI GTGCAG 1 cut(s) 486
BshNI GGYRCC 3 cut(s) 847, 1405, 2369
BsiHKAI GWGCWC 2 cut(s) 292, 604
BsiHKCI CYCGRG 1 cut(s) 2747
BsiSI CCGG 7 cut(s) 420, 492, 948, 974, 1403, 1913, 2648
BslFI GGGAC 8 cut(s) 964, 1050, 1832, 1854, 2140, 2340, 2673, 2941
BslI CCNNNNNNNGG 3 cut(s) 70, 325, 1837
BsmAI GTCTC 3 cut(s) 82, 1272, 1959
BsmBI CGTCTC 1 cut(s) 1272
BsmFI GGGAC 8 cut(s) 964, 1050, 1832, 1854, 2140, 2340, 2673, 2941
BsmI GAATGC 1 cut(s) 1983
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 2747
Bsp119I TTCGAA 1 cut(s) 914
Bsp1286I GDGCHC 4 cut(s) 292, 426, 604, 1495
Bsp143I GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
Bsp1720I GCTNAGC 1 cut(s) 1737
Bsp19I CCATGG 1 cut(s) 2677
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 5 cut(s) 849, 1038, 1407, 1474, 2371
BspMAI CTGCAG 4 cut(s) 306, 754, 861, 2951
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 1999, 3085
BspQI GCTCTTC 1 cut(s) 2285
BspT104I TTCGAA 1 cut(s) 914
BspT107I GGYRCC 3 cut(s) 847, 1405, 2369
BspTI CTTAAG 2 cut(s) 512, 548
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 2008, 2463
BsrFI RCCGGY 3 cut(s) 1402, 1912, 2647
BssAI RCCGGY 3 cut(s) 1402, 1912, 2647
BssECI CCNNGG 6 cut(s) 1409, 1761, 2248, 2677, 2754, 2795
BssMI GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
BssSI CACGAG 1 cut(s) 2620
BssT1I CCWWGG 3 cut(s) 2248, 2677, 2754
Bst2BI CACGAG 1 cut(s) 2620
Bst2UI CCWGG 7 cut(s) 1411, 1763, 1877, 1989, 2148, 2374, 2796
Bst4CI ACNGT 4 cut(s) 197, 1490, 2554, 2599
Bst6I CTCTTC 3 cut(s) 1357, 2285, 3045
BstAFI CTTAAG 2 cut(s) 512, 548
BstAPI GCANNNNNTGC 2 cut(s) 112, 1300
BstBAI YACGTR 1 cut(s) 3098
BstBI TTCGAA 1 cut(s) 914
BstC8I GCNNGC 5 cut(s) 221, 378, 412, 2454, 2802
BstDSI CCRYGG 1 cut(s) 2677
BstF5I GGATG 6 cut(s) 359, 517, 1255, 2357, 2548, 3034
BstH2I RGCGCY 2 cut(s) 2675, 2810
BstHHI GCGC 2 cut(s) 2674, 2809
BstKTI GATC 9 cut(s) 840, 1015, 1525, 1675, 1994, 2029, 2327, 2493, 3080
BstMAI GTCTC 3 cut(s) 82, 1272, 1959
BstMBI GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
BstMWI GCNNNNNNNGC 8 cut(s) 112, 514, 599, 758, 953, 1300, 2806, 2958
BstNI CCWGG 7 cut(s) 1411, 1763, 1877, 1989, 2148, 2374, 2796
BstNSI RCATGY 2 cut(s) 1090, 3093
BstSFI CTRYAG 4 cut(s) 302, 750, 857, 2947
BstSLI GKGCMC 2 cut(s) 426, 1495
BstSNI TACGTA 1 cut(s) 3098
BstV1I GCAGC 5 cut(s) 102, 1038, 2816, 2933, 2961
BstV2I GAAGAC 2 cut(s) 1569, 2593
BstX2I RGATCY 3 cut(s) 837, 1012, 1672
BstXI CCANNNNNNTGG 2 cut(s) 1694, 1876
BstYI RGATCY 3 cut(s) 837, 1012, 1672
BsuI GTATCC 1 cut(s) 2853
BtgI CCRYGG 1 cut(s) 2677
BtsCI GGATG 6 cut(s) 359, 517, 1255, 2357, 2548, 3034
BtsI GCAGTG 4 cut(s) 503, 629, 854, 2378
Cac8I GCNNGC 5 cut(s) 221, 378, 412, 2454, 2802
CciI TCATGA 1 cut(s) 801
CfoI GCGC 2 cut(s) 2674, 2809
Cfr10I RCCGGY 3 cut(s) 1402, 1912, 2647
Cfr13I GGNCC 8 cut(s) 677, 933, 1037, 1400, 1778, 2711, 2758, 2783
CseI GACGC 2 cut(s) 1995, 2352
Csp6I GTAC 5 cut(s) 822, 848, 1406, 2096, 2370
CspCI CAANNNNNGTGG 6 cut(s) 148, 183, 2398, 2433, 2709, 2744
CviQI GTAC 5 cut(s) 822, 848, 1406, 2096, 2370
DpnI GATC 9 cut(s) 839, 1014, 1524, 1674, 1993, 2028, 2326, 2492, 3079
DpnII GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
DraIII CACNNNGTG 2 cut(s) 59, 1168
EaeI YGGCCR 4 cut(s) 82, 1131, 2149, 2375
Eam1104I CTCTTC 3 cut(s) 1357, 2285, 3045
EarI CTCTTC 3 cut(s) 1357, 2285, 3045
Ecl136II GAGCTC 1 cut(s) 602
Eco105I TACGTA 1 cut(s) 3098
Eco130I CCWWGG 3 cut(s) 2248, 2677, 2754
Eco24I GRGCYC 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 4 cut(s) 933, 1037, 1778, 2758
Eco47III AGCGCT 2 cut(s) 2673, 2808
Eco53kI GAGCTC 1 cut(s) 602
Eco57I CTGAAG 6 cut(s) 171, 719, 1310, 1596, 1820, 2000
Eco88I CYCGRG 1 cut(s) 2747
EcoICRI GAGCTC 1 cut(s) 602
EcoO109I RGGNCCY 2 cut(s) 1778, 2711
EcoRI GAATTC 1 cut(s) 805
EcoRII CCWGG 7 cut(s) 1409, 1761, 1875, 1987, 2146, 2372, 2794
EcoT14I CCWWGG 3 cut(s) 2248, 2677, 2754
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 3 cut(s) 2248, 2677, 2754
Esp3I CGTCTC 1 cut(s) 1272
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 8 cut(s) 964, 1050, 1832, 1854, 2140, 2340, 2673, 2941
FblI GTMKAC 1 cut(s) 746
Fnu4HI GCNGC 5 cut(s) 116, 1027, 2805, 2947, 2950
FokI GGATG 6 cut(s) 346, 504, 1262, 2364, 2555, 3021
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 5 cut(s) 116, 1027, 2805, 2947, 2950
GlaI GCGC 2 cut(s) 2673, 2808
GluI GCNGC 5 cut(s) 116, 1027, 2805, 2947, 2950
GsaI CCCAGC 1 cut(s) 2127
HaeII RGCGCY 2 cut(s) 2675, 2810
HapII CCGG 7 cut(s) 420, 492, 948, 974, 1403, 1913, 2648
HgaI GACGC 2 cut(s) 1995, 2352
HhaI GCGC 2 cut(s) 2674, 2809
Hin6I GCGC 2 cut(s) 2672, 2807
HinP1I GCGC 2 cut(s) 2672, 2807
HincII GTYRAC 2 cut(s) 235, 450
HindII GTYRAC 2 cut(s) 235, 450
HindIII AAGCTT 3 cut(s) 701, 1100, 2437
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 7 cut(s) 420, 492, 948, 974, 1403, 1913, 2648
HphI GGTGA 5 cut(s) 1891, 1937, 2432, 2596, 2958
Hpy166II GTNNAC 7 cut(s) 235, 272, 450, 583, 747, 1084, 3095
Hpy8I GTNNAC 7 cut(s) 235, 272, 450, 583, 747, 1084, 3095
HpyAV CCTTC 8 cut(s) 200, 1169, 1391, 1486, 1769, 1829, 2189, 2909
HpyCH4III ACNGT 4 cut(s) 197, 1490, 2554, 2599
HpyCH4IV ACGT 1 cut(s) 3097
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 514, 599, 758, 953, 1300, 2806, 2958
HpySE526I ACGT 1 cut(s) 3097
HspAI GCGC 2 cut(s) 2672, 2807
KpnI GGTACC 3 cut(s) 851, 1409, 2373
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
LguI GCTCTTC 1 cut(s) 2285
LmnI GCTCC 7 cut(s) 123, 599, 923, 1478, 1506, 1980, 2679
Lsp1109I GCAGC 5 cut(s) 102, 1038, 2816, 2933, 2961
LweI GCATC 6 cut(s) 526, 2304, 2467, 2533, 2962, 3043
MaeII ACGT 1 cut(s) 3097
MaeIII GTNAC 7 cut(s) 89, 734, 813, 1765, 2525, 2554, 2732
MalI GATC 9 cut(s) 839, 1014, 1524, 1674, 1993, 2028, 2326, 2492, 3079
MboI GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
MfeI CAATTG 3 cut(s) 122, 681, 2221
MflI RGATCY 3 cut(s) 837, 1012, 1672
MhlI GDGCHC 4 cut(s) 292, 426, 604, 1495
MlsI TGGCCA 4 cut(s) 84, 1133, 2151, 2377
MluNI TGGCCA 4 cut(s) 84, 1133, 2151, 2377
MlyI GAGTC 5 cut(s) 129, 140, 1525, 2520, 2759
MmeI TCCRAC 3 cut(s) 1332, 1453, 2718
Mox20I TGGCCA 4 cut(s) 84, 1133, 2151, 2377
MscI TGGCCA 4 cut(s) 84, 1133, 2151, 2377
MslI CAYNNNNRTG 2 cut(s) 573, 2278
Msp20I TGGCCA 4 cut(s) 84, 1133, 2151, 2377
MspA1I CMGCKG 1 cut(s) 3059
MspCI CTTAAG 2 cut(s) 512, 548
MspI CCGG 7 cut(s) 420, 492, 948, 974, 1403, 1913, 2648
MunI CAATTG 3 cut(s) 122, 681, 2221
Mva1269I GAATGC 1 cut(s) 1983
MvaI CCWGG 7 cut(s) 1411, 1763, 1877, 1989, 2148, 2374, 2796
MwoI GCNNNNNNNGC 8 cut(s) 112, 514, 599, 758, 953, 1300, 2806, 2958
NciI CCSGG 3 cut(s) 421, 492, 949
NcoI CCATGG 1 cut(s) 2677
NdeII GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
NheI GCTAGC 1 cut(s) 376
NlaIV GGNNCC 5 cut(s) 849, 1038, 1407, 1474, 2371
NmuCI GTSAC 2 cut(s) 89, 2525
NspI RCATGY 2 cut(s) 1090, 3093
NspV TTCGAA 1 cut(s) 914
PaeR7I CTCGAG 1 cut(s) 2747
PagI TCATGA 1 cut(s) 801
PciI ACATGT 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 2285
PctI GAATGC 1 cut(s) 1983
PfeI GAWTC 7 cut(s) 257, 355, 977, 1138, 1690, 2590, 2830
PfoI TCCNGGA 2 cut(s) 490, 1987
PkrI GCNGC 5 cut(s) 117, 1028, 2806, 2948, 2951
PleI GAGTC 5 cut(s) 129, 140, 1524, 2519, 2758
PpsI GAGTC 5 cut(s) 129, 140, 1524, 2519, 2758
Ppu21I YACGTR 1 cut(s) 3098
PpuMI RGGWCCY 1 cut(s) 1778
PscI ACATGT 1 cut(s) 1086
PshBI ATTAAT 1 cut(s) 2642
PsiI TTATAA 1 cut(s) 1554
Psp124BI GAGCTC 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 1778
Psp6I CCWGG 7 cut(s) 1409, 1761, 1875, 1987, 2146, 2372, 2794
PspFI CCCAGC 1 cut(s) 2123
PspGI CCWGG 7 cut(s) 1409, 1761, 1875, 1987, 2146, 2372, 2794
PspN4I GGNNCC 5 cut(s) 849, 1038, 1407, 1474, 2371
PspPI GGNCC 8 cut(s) 677, 933, 1037, 1400, 1778, 2711, 2758, 2783
PspPPI RGGWCCY 1 cut(s) 1778
PspXI VCTCGAGB 1 cut(s) 2747
PstI CTGCAG 4 cut(s) 306, 754, 861, 2951
PsuI RGATCY 3 cut(s) 837, 1012, 1672
PvuII CAGCTG 1 cut(s) 3059
RsaI GTAC 5 cut(s) 823, 849, 1407, 2097, 2371
RsaNI GTAC 5 cut(s) 822, 848, 1406, 2096, 2370
RseI CAYNNNNRTG 2 cut(s) 573, 2278
SacI GAGCTC 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 2285
SatI GCNGC 5 cut(s) 116, 1027, 2805, 2947, 2950
Sau3AI GATC 9 cut(s) 837, 1012, 1522, 1672, 1991, 2026, 2324, 2490, 3077
Sau96I GGNCC 8 cut(s) 677, 933, 1037, 1400, 1778, 2711, 2758, 2783
ScaI AGTACT 1 cut(s) 2097
SchI GAGTC 5 cut(s) 129, 140, 1525, 2520, 2759
SduI GDGCHC 4 cut(s) 292, 426, 604, 1495
SfaNI GCATC 6 cut(s) 526, 2304, 2467, 2533, 2962, 3043
SfcI CTRYAG 4 cut(s) 302, 750, 857, 2947
Sfr274I CTCGAG 1 cut(s) 2747
SfuI TTCGAA 1 cut(s) 914
SinI GGWCC 4 cut(s) 933, 1037, 1778, 2758
SlaI CTCGAG 1 cut(s) 2747
SmiMI CAYNNNNRTG 2 cut(s) 573, 2278
SmlI CTYRAG 7 cut(s) 247, 512, 548, 992, 1642, 1885, 2747
SmoI CTYRAG 7 cut(s) 247, 512, 548, 992, 1642, 1885, 2747
SnaBI TACGTA 1 cut(s) 3098
SstI GAGCTC 1 cut(s) 604
StyI CCWWGG 3 cut(s) 2248, 2677, 2754
TaaI ACNGT 4 cut(s) 197, 1490, 2554, 2599
TaiI ACGT 1 cut(s) 3100
TaqI TCGA 8 cut(s) 144, 312, 561, 867, 914, 1514, 2509, 2748
TaqII GACCGA 1 cut(s) 921
TatI WGTACW 1 cut(s) 2095
TfiI GAWTC 7 cut(s) 257, 355, 977, 1138, 1690, 2590, 2830
TseFI GTSAC 2 cut(s) 89, 2525
TseI GCWGC 5 cut(s) 115, 1026, 2804, 2946, 2949
Tsp45I GTSAC 2 cut(s) 89, 2525
TspDTI ATGAA 8 cut(s) 557, 818, 1518, 1682, 1811, 2811, 2919, 2928
TspGWI ACGGA 1 cut(s) 1082
Vha464I CTTAAG 2 cut(s) 512, 548
VpaK11BI GGWCC 4 cut(s) 933, 1037, 1778, 2758
VspI ATTAAT 1 cut(s) 2642
XapI RAATTY 8 cut(s) 322, 529, 720, 772, 781, 805, 1337, 2388
XbaI TCTAGA 4 cut(s) 1669, 1771, 2170, 2191
XceI RCATGY 2 cut(s) 1090, 3093
XcmI CCANNNNNNNNNTGG 1 cut(s) 1603
XhoI CTCGAG 1 cut(s) 2747
XmiI GTMKAC 1 cut(s) 746
ZrmI AGTACT 1 cut(s) 2097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.