MD04G1161300.v1.1

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000047
Physical Location & Seq
Forward (+)
25206898 .. 25210008
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1161300.v1.1.491

Sequence Viewer

Length: 3111 bp
ATGAAAAGTTTGCTGCACTTCTTCCTGTTCTTGATAATTATCAAGTTAGTTCACGGCCGGTGTGATGCAGATGACCTATCGGCATTGCTCCGCTTAAAGAAGATAAGCCCGCCACCAGAAGCTTATGTTCCCCCCAAGCTTCTGTCATGGAATTCAAGTACCAACTGCTGTGCTTGGGACGGTGTTACTTGCAGTACTGACGGTCATGTCATCGGTCTTGACGTTAGCGGTGAATTTCTCGAAGGCGGGATTGACAATTCAAGCAGTCTCTTCGACCTTCAACATCTTCAAAGCCTCAATTTGTCCTACAATTGCCAAGTAGGCAAAAGTTTTCCGATTCCACCTGCAATCGGAAGGCTCACGAATTTGAGGTATCTAAACTTATCTATTACTTGTTATACAGGGCAAGTTCCATTTGCGATTACACGCTTGACAAGGTTGGTTACTCTTGATCTTTCCGGAAATTATAATTTCGGATACACTCAGTTAAAACTCTATAATCCGGATTTAAGCACGCTGGTTCAGAGCCTCACGGAGCTTAGAGAGTTATATCTTGATGGTGTAACTGTATCAGCATGGGACACTGAATGGTGCCAAGCCATATCATCTTCACTTCCAAACCTGAGGGTGTTGAGCTTGTCAGCTTGCAATCTTTCAGGTCCTATTGATCAGTCCCTTGCTAAACTTCAATCGTTATCGGTGATTCGATTGGATGACAATGATCTTCCTGTGCCACTTCCAGGAGTCTTTGCCAACTTCTCAAATTTGACATCCTTGAGTCTCCGTTCATGTTTGATGCGCGGAACATTTCCTGAAGAGCTCTTCCAGGTACCCACTCTACAAACTGTTGACCTTTCCGATAATCCACAACTTCATGGTTCCTTTCCAGAATTTCCCAGGAATAATTCTCTTCAGTCCTTGGTTCTAAGCAACACAAAGTTTTCAGGGATATTGCCAAAATCTATTGGCAATCTCAAAATGTTGTTGATGATAGATATTTCGGGTTGTAGTTTCTCTGGATCAATCCCAAAGTCAATTCAAAAACTCACACAATTGGTTCATTTGTATATGTCATCAAATAGGTTCAGTGGTCCTATTGATTCTATTCACTGGGAAAAACTTGTTAATCTGCTAAATATTGTGTTGGACTCGAATTTACTCAGCGGGATTATTCCATCTTCGATTGTTTCTCCACCCTTTTTGGAGGAACTACTGCTTTCCCACAATCAATTCTCCGGTCAACTCCATGAATTTTCAGATGTTTCCTCCTACTTAGTTACCCTCGATCTAAGTTTCAATAATTTGGAAGGAATAGTACCCTTGTCTATATATAATTTTCAAGGGCTTGAAACCCTTGATCTTTCTTCAAACAATTTCAGCGGCTTTCATTTTAACAGTCCTCAACAGTTGAGTAATCTTTCGGTCATTAATCTTTCGAACAACAGCTTGTTGGTTTTATACAATGGTACAACTTCCTCATATTCCTCATTTCCTCAAATTGTGAATTTGAACTTGGCTTCTAACAATTTGAGAACATTCCCGGATTTCTTTAGAAATCACAACGGCTTAACTGTTTTGGACCTTTCACAAAACCAGATTCAAGGCACGATTCCTAATTGGATTTGGGGGCTCATTTCACTTCTTAATGTCAATCTTTCTTGCAACTCCTTCGTGACTCTAGAATGGCCATTAACTAATTCTTCCGGCGTGTCTGAGCTTGACCTTCACTCAAATCAACTTCAGGGACAAATCCCAGTTTTCCTACCTTATGCCGGTTATCTGGATTACTCAAGAAATCATTTCAGCTCAAGTATACCAACTGACATTGGTAATTTCCTTAGCATGACTAGGTACTTGTCTCTTTCAAGGAATAACTTGCATGGGATCATTCCCGTTTCCATATGCAATGCAAGTTTGGAGTTTCTTGATATGTCCGATAACTCTCTGAGTGGCATGATTCCTCAATGTTTGACTGCAATGAGCAGTCGAGTACTTAGTTTAAGGAGAAACAACCTTACCGGAACAATTCCTGGTGGAGTTCTTGAATACTGTAGTTTCAGGATTCTAGACCTTGGTGAAAATCAGATAGAAGGTCAGGTTCCAAAATCTCTAGCCAACTGCACAGAACTAGAGATTCTAAACCTTGGAATCAATCAGATAACGGACACTTTTCCATGCTTTTTGAAAAACATCTCCACCTTGCGCATTCTGCTTATGCGATCCAATAATTTATATGGAGGGATTGGTTGTTCAGAGACCAATGGCACCTGGCCAAAGCTTCAAATCATAGACCTAGCTCACAACAATTTCAGTGGTGGAATACCAGCAAGATCTTTGACAACATGGCAAGCAATGATGGCTAACAAAGATGATTCCCGATCAAGGGCTAGGGCTCTAGAATTTCCAAATGATCCAGGGAGAGCTGTGGTTGAATTTGATTATTATGCTGCAATAACAGTTATTGGGAAAGGTTTGGAGATGGATCTGCAAAAGATTCTAACCATCTTCACTTTGATTGACTTCTCTGGTAACAAATTCAGCGGATCAATACCTAAGGAATTGGGAGACCTCAAATCCTTGTATGTCCTCAACTTGTCAAGTAATGCTTTCACTGGTGAAATCCCATCATCCTTGGGTAACTTGCAAAAGCTGGAGTCCTTAGACATGTCAAGGAACAAGCTAAGCGGGCAAATTCCACCAGAGTTTGCAGAGCTTAACTTCCTTTCGTTCTTGAATCTCTCAAATAATCAACTAGTCGGCAGGATCCCAACAAGTACTCAGTTTACGACATTTCCCAAAGCCTCCTTCATTGGAAACAAAGGATTATGGGGGCCTCCTTTGACAGTGGATAGCAAAGCAGGATCACCACCACCACCACCAACATTAAATGGAAGTCAGCAAAATTCTGGAGATGAGATTGATTGGGATCTTATCAGTGTCGAAATTGGATTTGTATTTGGCTTTGGAATTGCAGTCGGGTCACTTGTGTTCTACAAAAGATGGAGTAAATGGTATTACAAAGCTATGTATAAAATCCTTGTTAAGATATTCCCTCAACTTGAAGAAAGAATTGGTCCTCATGTTCACATGACTCAAAGGCCAAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1037

Amino Acids

114.55

Weight (kDa)

5.77

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 65 2.3e-10 Leucine rich repeat N-terminal domain
LRR_8 PF13855 303 - 362 2e-06 Leucine rich repeat
LRR_14 PF23598 304 - 360 1.3e-07 Leucine-rich repeat region
LRR_8 PF13855 424 - 483 1.1e-07 Leucine rich repeat
LRR_8 PF13855 499 - 556 2.5e-06 Leucine rich repeat
LRR_8 PF13855 859 - 918 1.5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AarI CACCTGC 1 cut(s) 352
AasI GACNNNNNNGTC 1 cut(s) 206
Acc16I TGCGCA 1 cut(s) 2204
Acc36I ACCTGC 1 cut(s) 352
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 3 cut(s) 591, 829, 2264
AccI GTMKAC 1 cut(s) 1813
AccII CGCG 1 cut(s) 801
AccIII TCCGGA 2 cut(s) 458, 502
AciI CCGC 9 cut(s) 91, 110, 228, 246, 801, 1164, 1380, 2541, 2685
AcoI YGGCCR 3 cut(s) 55, 1685, 2270
AcuI CTGAAG 3 cut(s) 834, 896, 1724
AfaI GTAC 8 cut(s) 160, 196, 831, 1317, 1468, 1853, 1992, 2776
AfiI CCNNNNNNNGG 5 cut(s) 350, 740, 1772, 2382, 2383
AflIII ACRYGT 1 cut(s) 2664
AhlI ACTAGT 1 cut(s) 2752
AjnI CCWGG 6 cut(s) 739, 825, 896, 2029, 2267, 2413
AjuI GAANNNNNNNTTGG 6 cut(s) 1496, 1528, 2789, 2821, 3054, 3086
AloI GAACNNNNNNTCC 2 cut(s) 2233, 2265
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 5 cut(s) 272, 785, 1863, 2249, 2559
Aor13HI TCCGGA 2 cut(s) 458, 502
AoxI GGCC 5 cut(s) 55, 1685, 2270, 2831, 3098
ApeKI GCWGC 2 cut(s) 13, 2447
AseI ATTAAT 1 cut(s) 1428
Asp718I GGTACC 1 cut(s) 829
AspLEI GCGC 2 cut(s) 801, 2205
AspS9I GGNCC 5 cut(s) 659, 1091, 1579, 2831, 3074
AsuC2I CCSGG 1 cut(s) 1541
AsuHPI GGTGA 5 cut(s) 242, 712, 2087, 2627, 2856
AsuII TTCGAA 1 cut(s) 1436
AvaII GGWCC 4 cut(s) 659, 1091, 1579, 3074
AxyI CCTNAGG 2 cut(s) 623, 2553
BalI TGGCCA 2 cut(s) 1687, 2272
BamHI GGATCC 1 cut(s) 2763
BanI GGYRCC 3 cut(s) 591, 829, 2264
BanII GRGCYC 3 cut(s) 822, 1632, 2395
BarI GAAGNNNNNNTAC 2 cut(s) 1299, 1331
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 2434
BccI CCATC 7 cut(s) 551, 1183, 2350, 2473, 2510, 2632, 2994
BceAI ACGGC 2 cut(s) 70, 1579
BcgI CGANNNNNNTGC 4 cut(s) 253, 287, 1651, 1685
BciT130I CCWGG 6 cut(s) 741, 827, 898, 2031, 2269, 2415
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 1541
BcoDI GTCTC 5 cut(s) 272, 785, 1863, 2249, 2559
BcuI ACTAGT 1 cut(s) 2752
BfaI CTAG 9 cut(s) 1679, 1848, 2066, 2111, 2129, 2294, 2388, 2396, 2753
BfmI CTRYAG 1 cut(s) 2050
BfuAI ACCTGC 1 cut(s) 352
BfuI GTATCC 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 321
BglII AGATCT 1 cut(s) 2330
BisI GCNGC 3 cut(s) 14, 1381, 2448
BlpI GCTNAGC 1 cut(s) 2681
BlsI GCNGC 3 cut(s) 15, 1382, 2449
BmcAI AGTACT 3 cut(s) 196, 1992, 2776
Bme1390I CCNGG 7 cut(s) 741, 827, 898, 1541, 2031, 2269, 2415
Bme18I GGWCC 4 cut(s) 659, 1091, 1579, 3074
BmgT120I GGNCC 5 cut(s) 659, 1091, 1579, 2831, 3074
BmiI GGNNCC 7 cut(s) 593, 831, 880, 2100, 2266, 2765, 2832
BmrFI CCNGG 7 cut(s) 741, 827, 898, 1541, 2031, 2269, 2415
BmrI ACTGGG 2 cut(s) 1120, 1748
BmsI GCATC 2 cut(s) 55, 786
BmuI ACTGGG 2 cut(s) 1120, 1748
BpmI CTGGAG 2 cut(s) 2672, 2928
Bpu10I CCTNAGC 1 cut(s) 1838
Bpu1102I GCTNAGC 1 cut(s) 2681
Bpu14I TTCGAA 1 cut(s) 1436
BpuEI CTTGAG 3 cut(s) 796, 1774, 1792
BpuMI CCSGG 1 cut(s) 1541
BsaBI GATNNNNATC 2 cut(s) 38, 2925
BsaI GGTCTC 2 cut(s) 2249, 2559
BsaJI CCNNGG 6 cut(s) 896, 918, 2071, 2143, 2414, 2631
BsaWI WCCGGW 4 cut(s) 458, 502, 1235, 2018
Bsc4I CCNNNNNNNGG 5 cut(s) 350, 740, 1772, 2382, 2383
Bse118I RCCGGY 2 cut(s) 57, 1772
Bse1I ACTGG 3 cut(s) 1115, 1754, 2617
Bse21I CCTNAGG 2 cut(s) 623, 2553
Bse3DI GCAATG 4 cut(s) 83, 1912, 1983, 2358
Bse8I GATNNNNATC 2 cut(s) 38, 2925
BseAI TCCGGA 2 cut(s) 458, 502
BseBI CCWGG 6 cut(s) 741, 827, 898, 2031, 2269, 2415
BseDI CCNNGG 6 cut(s) 896, 918, 2071, 2143, 2414, 2631
BseGI GGATG 3 cut(s) 718, 770, 2627
BseJI GATNNNNATC 2 cut(s) 38, 2925
BseLI CCNNNNNNNGG 5 cut(s) 350, 740, 1772, 2382, 2383
BseMI GCAATG 4 cut(s) 83, 1912, 1983, 2358
BseMII CTCAG 6 cut(s) 497, 614, 1174, 1704, 1937, 2792
BseNI ACTGG 3 cut(s) 1115, 1754, 2617
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 2434
BsgI GTGCAG 1 cut(s) 2104
Bsh1236I CGCG 1 cut(s) 801
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 5 cut(s) 57, 1687, 2272, 2833, 3100
BshNI GGYRCC 3 cut(s) 591, 829, 2264
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 8 cut(s) 58, 459, 503, 1236, 1541, 1704, 1773, 2019
BslFI GGGAC 4 cut(s) 191, 593, 658, 1758
BslI CCNNNNNNNGG 5 cut(s) 350, 740, 1772, 2382, 2383
BsmAI GTCTC 5 cut(s) 272, 785, 1863, 2249, 2559
BsmFI GGGAC 4 cut(s) 191, 593, 658, 1758
BsmI GAATGC 1 cut(s) 2205
BsnI GGCC 5 cut(s) 57, 1687, 2272, 2833, 3100
Bso31I GGTCTC 2 cut(s) 2249, 2559
Bsp119I TTCGAA 1 cut(s) 1436
Bsp1286I GDGCHC 3 cut(s) 822, 1632, 2395
Bsp13I TCCGGA 2 cut(s) 458, 502
Bsp1720I GCTNAGC 1 cut(s) 2681
BspACI CCGC 9 cut(s) 91, 110, 228, 246, 801, 1164, 1380, 2541, 2685
BspANI GGCC 5 cut(s) 57, 1687, 2272, 2833, 3100
BspCNI CTCAG 6 cut(s) 496, 615, 1173, 1705, 1938, 2791
BspEI TCCGGA 2 cut(s) 458, 502
BspFNI CGCG 1 cut(s) 801
BspLI GGNNCC 7 cut(s) 593, 831, 880, 2100, 2266, 2765, 2832
BspMI ACCTGC 1 cut(s) 352
BspQI GCTCTTC 2 cut(s) 810, 827
BspT104I TTCGAA 1 cut(s) 1436
BspT107I GGYRCC 3 cut(s) 591, 829, 2264
BspTNI GGTCTC 2 cut(s) 2249, 2559
BsrDI GCAATG 4 cut(s) 83, 1912, 1983, 2358
BsrFI RCCGGY 2 cut(s) 57, 1772
BsrI ACTGG 3 cut(s) 1115, 1754, 2617
BssAI RCCGGY 2 cut(s) 57, 1772
BssECI CCNNGG 6 cut(s) 896, 918, 2071, 2143, 2414, 2631
BssNAI GTATAC 1 cut(s) 1814
BssT1I CCWWGG 4 cut(s) 918, 2071, 2143, 2631
Bst1107I GTATAC 1 cut(s) 1814
Bst2UI CCWGG 6 cut(s) 741, 827, 898, 2031, 2269, 2415
Bst6I CTCTTC 4 cut(s) 275, 810, 827, 915
BstBI TTCGAA 1 cut(s) 1436
BstC8I GCNNGC 5 cut(s) 110, 515, 646, 2349, 2687
BstF5I GGATG 3 cut(s) 718, 770, 2627
BstFNI CGCG 1 cut(s) 801
BstHHI GCGC 2 cut(s) 801, 2205
BstMAI GTCTC 5 cut(s) 272, 785, 1863, 2249, 2559
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 4 cut(s) 321, 2209, 2357, 2686
BstNI CCWGG 6 cut(s) 741, 827, 898, 2031, 2269, 2415
BstNSI RCATGY 1 cut(s) 2668
BstSCI CCNGG 7 cut(s) 739, 825, 896, 1539, 2029, 2267, 2413
BstSFI CTRYAG 1 cut(s) 2050
BstUI CGCG 1 cut(s) 801
BstV1I GCAGC 1 cut(s) 2434
BstX2I RGATCY 4 cut(s) 2330, 2482, 2763, 2926
BstYI RGATCY 4 cut(s) 2330, 2482, 2763, 2926
BstZ17I GTATAC 1 cut(s) 1814
BstZI CGGCCG 1 cut(s) 55
Bsu36I CCTNAGG 2 cut(s) 623, 2553
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 5 cut(s) 57, 1687, 2272, 2833, 3100
BtsCI GGATG 3 cut(s) 718, 770, 2627
BtsIMutI CAGTG 7 cut(s) 582, 1093, 1108, 2317, 2610, 2850, 2941
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 5 cut(s) 110, 515, 646, 2349, 2687
CfoI GCGC 2 cut(s) 801, 2205
Cfr10I RCCGGY 2 cut(s) 57, 1772
Cfr13I GGNCC 5 cut(s) 659, 1091, 1579, 2831, 3074
Csp6I GTAC 8 cut(s) 159, 195, 830, 1316, 1467, 1852, 1991, 2775
CspCI CAANNNNNGTGG 4 cut(s) 1182, 1217, 2293, 2328
CviQI GTAC 8 cut(s) 159, 195, 830, 1316, 1467, 1852, 1991, 2775
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 3 cut(s) 55, 1685, 2270
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 4 cut(s) 275, 810, 827, 915
EarI CTCTTC 4 cut(s) 275, 810, 827, 915
Ecl136II GAGCTC 1 cut(s) 820
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 4 cut(s) 918, 2071, 2143, 2631
Eco24I GRGCYC 3 cut(s) 822, 1632, 2395
Eco31I GGTCTC 2 cut(s) 2249, 2559
Eco47I GGWCC 4 cut(s) 659, 1091, 1579, 3074
Eco52I CGGCCG 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 3 cut(s) 834, 896, 1724
Eco81I CCTNAGG 2 cut(s) 623, 2553
EcoICRI GAGCTC 1 cut(s) 820
EcoO109I RGGNCCY 2 cut(s) 659, 2831
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 6 cut(s) 739, 825, 896, 2029, 2267, 2413
EcoT14I CCWWGG 4 cut(s) 918, 2071, 2143, 2631
EcoT38I GRGCYC 3 cut(s) 822, 1632, 2395
ErhI CCWWGG 4 cut(s) 918, 2071, 2143, 2631
FalI AAGNNNNNCTT 2 cut(s) 2590, 2622
FaqI GGGAC 4 cut(s) 191, 593, 658, 1758
FauI CCCGC 4 cut(s) 117, 239, 1157, 2678
FauNDI CATATG 1 cut(s) 1901
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 1813
Fnu4HI GCNGC 3 cut(s) 14, 1381, 2448
FokI GGATG 3 cut(s) 725, 757, 2614
FriOI GRGCYC 3 cut(s) 822, 1632, 2395
Fsp4HI GCNGC 3 cut(s) 14, 1381, 2448
FspBI CTAG 9 cut(s) 1679, 1848, 2066, 2111, 2129, 2294, 2388, 2396, 2753
FspI TGCGCA 1 cut(s) 2204
GlaI GCGC 2 cut(s) 800, 2204
GluI GCNGC 3 cut(s) 14, 1381, 2448
GsuI CTGGAG 2 cut(s) 2672, 2928
HaeIII GGCC 5 cut(s) 57, 1687, 2272, 2833, 3100
HapII CCGG 8 cut(s) 58, 459, 503, 1236, 1541, 1704, 1773, 2019
HhaI GCGC 2 cut(s) 801, 2205
Hin6I GCGC 2 cut(s) 799, 2203
HinP1I GCGC 2 cut(s) 799, 2203
HincII GTYRAC 2 cut(s) 850, 1241
HindII GTYRAC 2 cut(s) 850, 1241
HindIII AAGCTT 3 cut(s) 120, 137, 2276
HpaII CCGG 8 cut(s) 58, 459, 503, 1236, 1541, 1704, 1773, 2019
HphI GGTGA 5 cut(s) 242, 712, 2087, 2627, 2856
Hpy166II GTNNAC 6 cut(s) 52, 850, 1241, 1814, 2784, 3085
Hpy8I GTNNAC 6 cut(s) 52, 850, 1241, 1814, 2784, 3085
HpyAV CCTTC 8 cut(s) 236, 287, 348, 1301, 1678, 1733, 2084, 2815
HpyCH4IV ACGT 2 cut(s) 222, 3106
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 2209, 2357, 2686
HpySE526I ACGT 2 cut(s) 222, 3106
HspAI GCGC 2 cut(s) 799, 2203
Kpn2I TCCGGA 2 cut(s) 458, 502
KpnI GGTACC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 667
LguI GCTCTTC 2 cut(s) 810, 827
LmnI GCTCC 2 cut(s) 93, 535
Lsp1109I GCAGC 1 cut(s) 2434
LweI GCATC 2 cut(s) 55, 786
MaeI CTAG 9 cut(s) 1679, 1848, 2066, 2111, 2129, 2294, 2388, 2396, 2753
MaeII ACGT 2 cut(s) 222, 3106
MaeIII GTNAC 8 cut(s) 184, 442, 562, 1276, 1672, 2528, 2636, 2979
MfeI CAATTG 2 cut(s) 310, 1052
MflI RGATCY 4 cut(s) 2330, 2482, 2763, 2926
MhlI GDGCHC 3 cut(s) 822, 1632, 2395
MlsI TGGCCA 2 cut(s) 1687, 2272
MluNI TGGCCA 2 cut(s) 1687, 2272
MlyI GAGTC 6 cut(s) 753, 787, 1142, 1669, 2663, 3085
MmeI TCCRAC 1 cut(s) 1125
Mox20I TGGCCA 2 cut(s) 1687, 2272
MroI TCCGGA 2 cut(s) 458, 502
MscI TGGCCA 2 cut(s) 1687, 2272
Msp20I TGGCCA 2 cut(s) 1687, 2272
MspA1I CMGCKG 3 cut(s) 1164, 1380, 2541
MspI CCGG 8 cut(s) 58, 459, 503, 1236, 1541, 1704, 1773, 2019
MspR9I CCNGG 7 cut(s) 741, 827, 898, 1541, 2031, 2269, 2415
MunI CAATTG 2 cut(s) 310, 1052
Mva1269I GAATGC 1 cut(s) 2205
MvaI CCWGG 6 cut(s) 741, 827, 898, 2031, 2269, 2415
MvnI CGCG 1 cut(s) 801
MwoI GCNNNNNNNGC 4 cut(s) 321, 2209, 2357, 2686
NciI CCSGG 1 cut(s) 1541
NdeI CATATG 1 cut(s) 1901
NlaIV GGNNCC 7 cut(s) 593, 831, 880, 2100, 2266, 2765, 2832
NmuCI GTSAC 2 cut(s) 1672, 2979
NsbI TGCGCA 1 cut(s) 2204
NspI RCATGY 1 cut(s) 2668
NspV TTCGAA 1 cut(s) 1436
PaqCI CACCTGC 1 cut(s) 352
PciI ACATGT 1 cut(s) 2664
PciSI GCTCTTC 2 cut(s) 810, 827
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 2205
PfoI TCCNGGA 2 cut(s) 739, 1539
PkrI GCNGC 3 cut(s) 15, 1382, 2449
PleI GAGTC 6 cut(s) 752, 786, 1142, 1669, 2662, 3085
PpsI GAGTC 6 cut(s) 752, 786, 1142, 1669, 2662, 3085
PpuMI RGGWCCY 1 cut(s) 659
PscI ACATGT 1 cut(s) 2664
PshBI ATTAAT 1 cut(s) 1428
PsiI TTATAA 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 822
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 6 cut(s) 739, 825, 896, 2029, 2267, 2413
PspGI CCWGG 6 cut(s) 739, 825, 896, 2029, 2267, 2413
PspN4I GGNNCC 7 cut(s) 593, 831, 880, 2100, 2266, 2765, 2832
PspPI GGNCC 5 cut(s) 659, 1091, 1579, 2831, 3074
PspPPI RGGWCCY 1 cut(s) 659
PsuI RGATCY 4 cut(s) 2330, 2482, 2763, 2926
RsaI GTAC 8 cut(s) 160, 196, 831, 1317, 1468, 1853, 1992, 2776
RsaNI GTAC 8 cut(s) 159, 195, 830, 1316, 1467, 1852, 1991, 2775
SacI GAGCTC 1 cut(s) 822
SapI GCTCTTC 2 cut(s) 810, 827
SatI GCNGC 3 cut(s) 14, 1381, 2448
Sau96I GGNCC 5 cut(s) 659, 1091, 1579, 2831, 3074
ScaI AGTACT 3 cut(s) 196, 1992, 2776
SchI GAGTC 6 cut(s) 753, 787, 1142, 1669, 2663, 3085
ScrFI CCNGG 7 cut(s) 741, 827, 898, 1541, 2031, 2269, 2415
SduI GDGCHC 3 cut(s) 822, 1632, 2395
SfaNI GCATC 2 cut(s) 55, 786
SfcI CTRYAG 1 cut(s) 2050
SfuI TTCGAA 1 cut(s) 1436
SinI GGWCC 4 cut(s) 659, 1091, 1579, 3074
SmlI CTYRAG 3 cut(s) 775, 1789, 1807
SmoI CTYRAG 3 cut(s) 775, 1789, 1807
SpeI ACTAGT 1 cut(s) 2752
SsiI CCGC 9 cut(s) 91, 110, 228, 246, 801, 1164, 1380, 2541, 2685
SspI AATATT 1 cut(s) 1138
SspMI CTAG 9 cut(s) 1679, 1848, 2066, 2111, 2129, 2294, 2388, 2396, 2753
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 7 cut(s) 739, 825, 896, 1539, 2029, 2267, 2413
StyI CCWWGG 4 cut(s) 918, 2071, 2143, 2631
TaiI ACGT 2 cut(s) 225, 3109
TaqI TCGA 9 cut(s) 240, 273, 706, 1151, 1181, 1284, 1436, 1987, 2940
TaqII GACCGA 2 cut(s) 203, 1411
TatI WGTACW 3 cut(s) 194, 1990, 2774
TauI GCSGC 1 cut(s) 1383
TscAI CASTG 7 cut(s) 589, 1093, 1115, 2317, 2617, 2850, 2941
TseFI GTSAC 2 cut(s) 1672, 2979
TseI GCWGC 2 cut(s) 13, 2447
Tsp45I GTSAC 2 cut(s) 1672, 2979
TspDTI ATGAA 7 cut(s) 17, 777, 863, 1049, 1263, 1376, 2797
TspGWI ACGGA 3 cut(s) 548, 773, 2177
TspRI CASTG 7 cut(s) 589, 1093, 1115, 2317, 2617, 2850, 2941
VpaK11BI GGWCC 4 cut(s) 659, 1091, 1579, 3074
VspI ATTAAT 1 cut(s) 1428
XbaI TCTAGA 3 cut(s) 1678, 2065, 2395
XceI RCATGY 1 cut(s) 2668
XmiI GTMKAC 1 cut(s) 1813
XspI CTAG 9 cut(s) 1679, 1848, 2066, 2111, 2129, 2294, 2388, 2396, 2753
ZrmI AGTACT 3 cut(s) 196, 1992, 2776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.