Rroxscaffold_4G00301900

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000047
Physical Location & Seq
Forward (+)
22248050 .. 22251319
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301900.1

Sequence Viewer

Length: 3270 bp
ATGAAAACTTCCCTACATTTCTTCCTTTGCTTAATCACACTCTGGGTCAGTATCATCATCCCAGCAGTTCACAGCCAGTGTATTAAAGACCAGCAACTATCATTGCTCCAATTCAAGAAAAGCCTCGTGTTCCATGCTTCTTTCCATCATTCCTCCAAGCTTATTTCTTGGAATGCAAGGACTGATTGTTGTTCTTGGGTGGGCGTCATTTGCAGCAGTAGTGGGCGTGTACTGGGTCTTGATATAAGCAGCGAACATATCTCAGCTGGAATTGACTATTCCAGCAGTCTCTTCCATCTTCATTATCTTCAAAGCCTCAATCTGGCGGACAACCGACTTGGTAGTAACTCCCAAACAATTCCATCCGTGATCGGAAATCTCCTGAACTTGAGGTACCTGAATTTATCTCTTAATCATTATTCAGGGCAAATTCCCATTGAAATTTCACAATTGACGAGGTTAGAAGTTGTTGATTTTTCTTACAATAATGCCACCTTAAAACTTGGAAGTCCAAATTTACACATGTTGGTTCAAAACTTCACAGAACTTAGAGAGTTATATCTTGATGGTGTCCAGATATCAGAACAGGGGAGGGAGTGGTGCCAAGCCATATCATATTCCCTTCCTAACCTCAGGGTCTTGAGCATGTCCGGGTGTGATCTCTCAGGCCCATTTCTCGAGTCCCTTGCTAAGCTTCGGTCTCTATCCGTGATTAGGTTGGACATGAACAATATCTTTGCACCAGTTCCAAGATTCTTTGCCAACTTTTCAAACTTGACTGTCTTGAGTCTCTACGATTGTGGGTTGCATGGAACATTTCCCAAAGAAATCTTTCAGTTACCTTCTCTACAAAGTATTGACCTTTCATTTAATGACCAACTTGATGGTTCCTTGCCAGATTTCCCAAATAATGGATCTCTTCAGTACCTGTATCTAATTTTGACAAATTTTTCAGGGTTATTACCAAATTCTATTGGCAACCTCAAAATGTTGTCAACCATACATATTGATGAGTGCAAGTTCACCGGACCGATCCCCAAGTCAATGACAAACCTTACAAAATTGGTTTCTTTGTCGATGTCTGATAACAATTTGGAAGGTTCAATTCCGTCATTCAGTGGGGCCAAGGATGTTTTTGACATAGACCTTTCCTTCAATGCTCTAACCAGTACTGTTAATTCCACCCATTGGAGAAACTTTACTAAGCTATCCTTTCTTTATTTGAGATCCAATAAGCTCGATGGGAATATCCCAGCATCTCTGTTTTCTCTTCCCCTTTTGGATGATCTAGATCTTTCCAGCAATCAATTCTCTGGTCAATTCCCTGAAATTTCAAATGTGTCTTCCTACTTGCTGCATGGTCTTCATCGTCTTCGTGATGATTTGAGTAGCAACAATCTAGAAGGGTCGATAGCTACGTCAGTCTCTAGTTTACAAAGTCTTTATTTGGGTAGCAACAATCTCGAAGGGCCAATACCTTTGTCTATCTTTCGCTTACGAGGTCTCACCACTCTAGATCTTTCTTCAAATAATTTAAGTGGTTCGTTTCCTCTTGACTGTCTACACCAGCTAAGAAATCTTTCCATACTTGATCTTTCACACAATAACTTGTTTCTTAGCCATGATTATACCAATTTCTCACATTCCACATTTTCTCAACTATCTATGCTGAGCTTGGTGTCATTGAAATTGAGAACATTCCCTAATTTCTTGAGAAATCAATCAAACTTGATGAGTCTGGACCTTTCAGATAACCAAATGAAAGGCAAGATACCCAACTGGATCTGGAGTTTAAGTAATCTTGAGTACCTAAATCTTTCTTGCAACTCCCTAGATTCTCTAGAAGTTCATTCAATCAATCTCACTAATCTAATTTACCTCGACCTTCATTCCAATCAGATTCATGGGCAAATCCCAATTTTTCAACCACCTTGCTATGTCTATTATCTAGATTTCTCAAAGAATTATTTCAGCTCTATCATACCGAGTACCATTGGAGATGTGTTTCTTAACATTGACTTCTTGTCGCTTTCGAGCAATAACCTCAATGGAATCATTCCAGAATCATTATGCAATTCACAACGTCTTAAGACTCTTGATCTGTCCAATAATTCTTTGAGTGGCACGATTCCCCAGTGTTTAGCTACAATGAAGACGCTTGCAGTACTCAATCTAAGGAGAAACAATATTAGATATGTTAATGAATTCTCGCAAATTTGCAGTTTAAAAACTCTGGACATCAGTGGAAATCAGATTCAAGGCCAGTTTCTAAAATCTCTTGTCAATTGCACCCAGTTAGAGGTTTTAAACCTTGGAAACAATCTGATAACAGAACCTTTTCCATGCTTTTTGAGGAGCACATCCACTTTGCGTGTCCTTGTCTTGCGATCTAATAAATTCTATGGGCAGATTGGATGTCGCAAGATTAAGGGCACTTGGCCAGTTCTTCAAATCATAGACCTAGCTCACAACAATTTTAGTGGTGATGTGCCTGGAACAGCTTTGTCAACTTGGCAAGCGATGAGGACTAGCAAAGATGATGCCCCATGGAAGATCAATAACCTTCAATATGAGTTTGGTGGAGCTTATTATCAAGAAGATACAATCATGGTTACCAACAAAGGTTTTGAGATAGAGCTGGTGAATGTTTTAACTATCTACACCTCGATTGACTTCTCGTGCAACAAGTTCAATGGATCAATACCGGAGGAAATTGGAGAACTCAAATCATTATATGCTCTCAACTTGTCCAACAATGCTTTCACTGGTGCAGTTCCATCATCATTAAGTAACTTGCATCAGCTAGAGTCCTTGGACCTATCGAGAAACAAGCTGAGCGGTCAAATCCCACTGGAGCTTACAAAACTCACTTTCCTTGCATTCTTAAATCTCTCATATAATCAATTGGTCGGGAGGATACCAAGTGGTGCTCAATTTTCAACATTTGATGTAGCTTCCTTCAAAGGTAATAAAGGATTGTGGGGGCCTCCTTTAACAGCAGATAATAGAATAGGGTTCTCATCACCAAAGCTGGGAGGAAACTGTTCAAATCCTGGACATGACATTGATTGGGATATTATCTATGCTGAAATTGGATTTACATGTGGGTTTGGGATTGTCATCGGGTCACTTTTGTTTTGCAAGAGATTGAGGAAATGGTATTACAGAGCTATGTATAACATGCTTCTAAAGATATTCCCTCAGCTAGAACAGAGATTTGGTCATCACAGGAGACATGTTTACGCACATCACAGATATCGGAGACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1089

Amino Acids

122.1

Weight (kDa)

7.16

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 72 5.9e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 306 - 362 6.1e-06 Leucine-rich repeat region
LRR_8 PF13855 477 - 537 4.5e-08 Leucine rich repeat
LRR_8 PF13855 568 - 611 9.5e-06 Leucine rich repeat
LRR_8 PF13855 695 - 752 6.5e-10 Leucine rich repeat
LRR_4 PF12799 741 - 777 5.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 910 - 969 2.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 393
AccB1I GGYRCC 2 cut(s) 393, 600
AccB7I CCANNNNNTGG 2 cut(s) 911, 1188
AccBSI CCGCTC 1 cut(s) 2838
AccI GTMKAC 1 cut(s) 1561
AciI CCGC 2 cut(s) 326, 2838
AclWI GGATC 5 cut(s) 922, 1027, 1221, 1790, 2704
AcoI YGGCCR 1 cut(s) 2438
AcuI CTGAAG 1 cut(s) 905
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 7 cut(s) 231, 395, 926, 1171, 1808, 1990, 2166
AfiI CCNNNNNNNGG 6 cut(s) 322, 714, 911, 1188, 2299, 3032
AflII CTTAAG 1 cut(s) 2087
AflIII ACRYGT 3 cut(s) 522, 3101, 3235
AhdI GACNNNNNGTC 1 cut(s) 2023
AjnI CCWGG 2 cut(s) 2491, 3052
AjuI GAANNNNNNNTTGG 4 cut(s) 2744, 2776, 3201, 3233
Alw21I GWGCWC 2 cut(s) 2360, 2932
Alw26I GTCTC 7 cut(s) 293, 705, 794, 1429, 1508, 3226, 3256
AlwI GGATC 5 cut(s) 922, 1027, 1221, 1790, 2704
AlwNI CAGNNNCTG 1 cut(s) 928
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 6 cut(s) 667, 1122, 1469, 2260, 2438, 2984
ApeKI GCWGC 3 cut(s) 213, 249, 1354
Asp700I GAANNNNTTC 5 cut(s) 831, 1579, 1967, 2337, 3043
Asp718I GGTACC 1 cut(s) 393
AspS9I GGNCC 7 cut(s) 668, 1028, 1122, 1469, 1741, 2815, 2984
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 5 cut(s) 1015, 1498, 2495, 2653, 3015
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 3 cut(s) 1028, 1741, 2815
AxyI CCTNAGG 1 cut(s) 632
BaeGI GKGCMC 1 cut(s) 2435
BalI TGGCCA 1 cut(s) 2440
BanI GGYRCC 2 cut(s) 393, 600
BarI GAAGNNNNNNTAC 2 cut(s) 1458, 1490
BauI CACGAG 2 cut(s) 125, 2677
BbsI GAAGAC 4 cut(s) 1335, 1355, 1364, 2159
Bbv12I GWGCWC 2 cut(s) 2360, 2932
BbvCI CCTCAGC 1 cut(s) 3201
BbvI GCAGC 3 cut(s) 225, 261, 1341
BccI CCATC 7 cut(s) 153, 303, 370, 560, 878, 1235, 2785
BcgI CGANNNNNNTGC 4 cut(s) 668, 702, 1444, 1478
BciT130I CCWGG 2 cut(s) 2493, 3054
BciVI GTATCC 1 cut(s) 2910
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 7 cut(s) 293, 705, 794, 1429, 1508, 3226, 3256
BfrI CTTAAG 1 cut(s) 2087
BfuI GTATCC 1 cut(s) 2910
BglII AGATCT 2 cut(s) 1291, 1516
BisI GCNGC 3 cut(s) 214, 250, 1355
BlpI GCTNAGC 3 cut(s) 690, 1670, 2834
BlsI GCNGC 3 cut(s) 215, 251, 1356
BmcAI AGTACT 2 cut(s) 1171, 2166
Bme1390I CCNGG 3 cut(s) 652, 2493, 3054
Bme18I GGWCC 3 cut(s) 1028, 1741, 2815
BmeRI GACNNNNNGTC 1 cut(s) 2023
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 7 cut(s) 668, 1028, 1122, 1469, 1741, 2815, 2984
BmiI GGNNCC 5 cut(s) 395, 602, 889, 1123, 2985
BmrFI CCNGG 3 cut(s) 652, 2493, 3054
BmrI ACTGGG 3 cut(s) 242, 2128, 2287
BmsI GCATC 3 cut(s) 1265, 2530, 2806
BmuI ACTGGG 3 cut(s) 242, 2128, 2287
BpiI GAAGAC 4 cut(s) 1335, 1355, 1364, 2159
BpmI CTGGAG 2 cut(s) 1807, 2873
Bpu10I CCTNAGC 1 cut(s) 3201
Bpu1102I GCTNAGC 3 cut(s) 690, 1670, 2834
BpuEI CTTGAG 5 cut(s) 409, 661, 805, 1732, 1823
BpuMI CCSGG 1 cut(s) 652
BsaBI GATNNNNATC 2 cut(s) 1290, 3119
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 705, 1508
BsaJI CCNNGG 4 cut(s) 1125, 2311, 2546, 2811
BsaWI WCCGGW 2 cut(s) 1025, 2704
BsaXI ACNNNNNCTCC 2 cut(s) 1780, 1810
Bsc4I CCNNNNNNNGG 6 cut(s) 322, 714, 911, 1188, 2299, 3032
Bse21I CCTNAGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 101
Bse8I GATNNNNATC 2 cut(s) 1290, 3119
BseBI CCWGG 2 cut(s) 2493, 3054
BseDI CCNNGG 4 cut(s) 1125, 2311, 2546, 2811
BseGI GGATG 6 cut(s) 57, 362, 1135, 1288, 2360, 2420
BseJI GATNNNNATC 2 cut(s) 1290, 3119
BseLI CCNNNNNNNGG 6 cut(s) 322, 714, 911, 1188, 2299, 3032
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 6 cut(s) 276, 646, 678, 1661, 2825, 3215
BseRI GAGGAG 1 cut(s) 2368
BseSI GKGCMC 1 cut(s) 2435
BseXI GCAGC 3 cut(s) 225, 261, 1341
BseYI CCCAGC 3 cut(s) 61, 1252, 3031
BsgI GTGCAG 1 cut(s) 2790
BshFI GGCC 6 cut(s) 669, 1124, 1471, 2262, 2440, 2986
BshNI GGYRCC 2 cut(s) 393, 600
BsiHKAI GWGCWC 2 cut(s) 2360, 2932
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 3 cut(s) 651, 1026, 2705
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 6 cut(s) 322, 714, 911, 1188, 2299, 3032
BsmAI GTCTC 7 cut(s) 293, 705, 794, 1429, 1508, 3226, 3256
BsmFI GGGAC 1 cut(s) 667
BsmI GAATGC 2 cut(s) 178, 2879
BsnI GGCC 6 cut(s) 669, 1124, 1471, 2262, 2440, 2986
Bso31I GGTCTC 2 cut(s) 705, 1508
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 3 cut(s) 2360, 2435, 2932
Bsp1720I GCTNAGC 3 cut(s) 690, 1670, 2834
Bsp19I CCATGG 1 cut(s) 2546
BspACI CCGC 2 cut(s) 326, 2838
BspANI GGCC 6 cut(s) 669, 1124, 1471, 2262, 2440, 2986
BspCNI CTCAG 6 cut(s) 275, 645, 677, 1662, 2826, 3214
BspLI GGNNCC 5 cut(s) 395, 602, 889, 1123, 2985
BspPI GGATC 5 cut(s) 922, 1027, 1221, 1790, 2704
BspT107I GGYRCC 2 cut(s) 393, 600
BspTI CTTAAG 1 cut(s) 2087
BspTNI GGTCTC 2 cut(s) 705, 1508
BsrBI CCGCTC 1 cut(s) 2838
BsrDI GCAATG 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 1125, 2311, 2546, 2811
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 2 cut(s) 125, 2677
BssT1I CCWWGG 4 cut(s) 1125, 2311, 2546, 2811
Bst2BI CACGAG 2 cut(s) 125, 2677
Bst2UI CCWGG 2 cut(s) 2493, 3054
Bst4CI ACNGT 4 cut(s) 781, 1174, 1559, 3044
Bst6I CTCTTC 3 cut(s) 296, 924, 1275
BstACI GRCGYC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 2087
BstC8I GCNNGC 2 cut(s) 2160, 2517
BstDSI CCRYGG 1 cut(s) 2546
BstEII GGTNACC 1 cut(s) 2611
BstF5I GGATG 6 cut(s) 57, 362, 1135, 1288, 2360, 2420
BstMAI GTCTC 7 cut(s) 293, 705, 794, 1429, 1508, 3226, 3256
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 2 cut(s) 2493, 3054
BstNSI RCATGY 5 cut(s) 526, 649, 3105, 3184, 3239
BstPI GGTNACC 1 cut(s) 2611
BstSCI CCNGG 3 cut(s) 650, 2491, 3052
BstSLI GKGCMC 1 cut(s) 2435
BstV1I GCAGC 3 cut(s) 225, 261, 1341
BstV2I GAAGAC 4 cut(s) 1335, 1355, 1364, 2159
BstX2I RGATCY 5 cut(s) 914, 1226, 1291, 1516, 1782
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 5 cut(s) 914, 1226, 1291, 1516, 1782
Bsu36I CCTNAGG 1 cut(s) 632
BsuI GTATCC 1 cut(s) 2910
BsuRI GGCC 6 cut(s) 669, 1124, 1471, 2262, 2440, 2986
BtgI CCRYGG 1 cut(s) 2546
BtgZI GCGATG 1 cut(s) 2534
BtsCI GGATG 6 cut(s) 57, 362, 1135, 1288, 2360, 2420
BtsIMutI CAGTG 6 cut(s) 83, 1123, 2141, 2248, 2763, 2849
Cac8I GCNNGC 2 cut(s) 2160, 2517
CaiI CAGNNNCTG 1 cut(s) 928
Cfr13I GGNCC 7 cut(s) 668, 1028, 1122, 1469, 1741, 2815, 2984
CpoI CGGWCCG 1 cut(s) 1028
CseI GACGC 2 cut(s) 193, 2164
Csp6I GTAC 7 cut(s) 230, 394, 925, 1170, 1807, 1989, 2165
CspCI CAANNNNNGTGG 2 cut(s) 2461, 2496
CspI CGGWCCG 1 cut(s) 1028
CviQI GTAC 7 cut(s) 230, 394, 925, 1170, 1807, 1989, 2165
DraI TTTAAA 2 cut(s) 2226, 2307
DriI GACNNNNNGTC 1 cut(s) 2023
EaeI YGGCCR 1 cut(s) 2438
Eam1104I CTCTTC 3 cut(s) 296, 924, 1275
Eam1105I GACNNNNNGTC 1 cut(s) 2023
EarI CTCTTC 3 cut(s) 296, 924, 1275
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 4 cut(s) 1125, 2311, 2546, 2811
Eco31I GGTCTC 2 cut(s) 705, 1508
Eco32I GATATC 2 cut(s) 579, 3257
Eco47I GGWCC 3 cut(s) 1028, 1741, 2815
Eco57I CTGAAG 1 cut(s) 905
Eco81I CCTNAGG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 677
Eco91I GGTNACC 1 cut(s) 2611
EcoO109I RGGNCCY 1 cut(s) 2984
EcoO65I GGTNACC 1 cut(s) 2611
EcoRI GAATTC 1 cut(s) 2204
EcoRII CCWGG 2 cut(s) 2491, 3052
EcoRV GATATC 2 cut(s) 579, 3257
EcoT14I CCWWGG 4 cut(s) 1125, 2311, 2546, 2811
ErhI CCWWGG 4 cut(s) 1125, 2311, 2546, 2811
FalI AAGNNNNNCTT 2 cut(s) 1196, 1228
FaqI GGGAC 1 cut(s) 667
FblI GTMKAC 1 cut(s) 1561
Fnu4HI GCNGC 3 cut(s) 214, 250, 1355
FokI GGATG 6 cut(s) 44, 349, 1142, 1295, 2347, 2427
Fsp4HI GCNGC 3 cut(s) 214, 250, 1355
GluI GCNGC 3 cut(s) 214, 250, 1355
GsaI CCCAGC 3 cut(s) 65, 1256, 3035
GsuI CTGGAG 2 cut(s) 1807, 2873
HaeIII GGCC 6 cut(s) 669, 1124, 1471, 2262, 2440, 2986
HapII CCGG 3 cut(s) 651, 1026, 2705
HgaI GACGC 2 cut(s) 193, 2164
Hin1I GRCGYC 1 cut(s) 204
HincII GTYRAC 2 cut(s) 996, 2508
HindII GTYRAC 2 cut(s) 996, 2508
HindIII AAGCTT 2 cut(s) 158, 692
HpaII CCGG 3 cut(s) 651, 1026, 2705
HphI GGTGA 5 cut(s) 1015, 1498, 2495, 2653, 3015
Hpy166II GTNNAC 8 cut(s) 70, 230, 996, 1023, 1433, 1562, 2508, 3241
Hpy188I TCNGA 8 cut(s) 374, 583, 1084, 1750, 1899, 2253, 2325, 3261
Hpy8I GTNNAC 8 cut(s) 70, 230, 996, 1023, 1433, 1562, 2508, 3241
HpyAV CCTTC 9 cut(s) 632, 852, 1091, 1162, 1397, 1460, 1895, 2573, 2968
HpyCH4III ACNGT 4 cut(s) 781, 1174, 1559, 3044
HpyCH4IV ACGT 2 cut(s) 1418, 2083
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpySE526I ACGT 2 cut(s) 1418, 2083
Hsp92I GRCGYC 1 cut(s) 204
KpnI GGTACC 1 cut(s) 397
LmnI GCTCC 4 cut(s) 111, 2355, 2582, 2854
Lsp1109I GCAGC 3 cut(s) 225, 261, 1341
LweI GCATC 3 cut(s) 1265, 2530, 2806
MaeII ACGT 2 cut(s) 1418, 2083
MaeIII GTNAC 5 cut(s) 344, 837, 2611, 2789, 3126
MbiI CCGCTC 1 cut(s) 2838
MfeI CAATTG 3 cut(s) 449, 2284, 2903
MflI RGATCY 5 cut(s) 914, 1226, 1291, 1516, 1782
MhlI GDGCHC 3 cut(s) 2360, 2435, 2932
MlsI TGGCCA 1 cut(s) 2440
MluNI TGGCCA 1 cut(s) 2440
MlyI GAGTC 5 cut(s) 689, 796, 1744, 2086, 2816
MmeI TCCRAC 2 cut(s) 699, 2775
Mox20I TGGCCA 1 cut(s) 2440
MroXI GAANNNNTTC 5 cut(s) 831, 1579, 1967, 2337, 3043
MscI TGGCCA 1 cut(s) 2440
MslI CAYNNNNRTG 1 cut(s) 1008
Msp20I TGGCCA 1 cut(s) 2440
MspA1I CMGCKG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 2087
MspI CCGG 3 cut(s) 651, 1026, 2705
MspR9I CCNGG 3 cut(s) 652, 2493, 3054
MunI CAATTG 3 cut(s) 449, 2284, 2903
Mva1269I GAATGC 2 cut(s) 178, 2879
MvaI CCWGG 2 cut(s) 2493, 3054
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 652
NcoI CCATGG 1 cut(s) 2546
NlaIV GGNNCC 5 cut(s) 395, 602, 889, 1123, 2985
NmuCI GTSAC 1 cut(s) 3126
NspI RCATGY 5 cut(s) 526, 649, 3105, 3184, 3239
PaeR7I CTCGAG 1 cut(s) 677
PciI ACATGT 3 cut(s) 522, 3101, 3235
PcsI WCGNNNNNNNCGW 1 cut(s) 1415
PctI GAATGC 2 cut(s) 178, 2879
PdmI GAANNNNTTC 5 cut(s) 831, 1579, 1967, 2337, 3043
PfeI GAWTC 7 cut(s) 753, 1835, 1900, 2052, 2063, 2128, 2254
PflMI CCANNNNNTGG 2 cut(s) 911, 1188
PfoI TCCNGGA 1 cut(s) 3052
PkrI GCNGC 3 cut(s) 215, 251, 1356
PleI GAGTC 5 cut(s) 688, 795, 1743, 2086, 2815
PpsI GAGTC 5 cut(s) 688, 795, 1743, 2086, 2815
PscI ACATGT 3 cut(s) 522, 3101, 3235
Psp6I CCWGG 2 cut(s) 2491, 3052
PspEI GGTNACC 1 cut(s) 2611
PspFI CCCAGC 3 cut(s) 61, 1252, 3031
PspGI CCWGG 2 cut(s) 2491, 3052
PspN4I GGNNCC 5 cut(s) 395, 602, 889, 1123, 2985
PspPI GGNCC 7 cut(s) 668, 1028, 1122, 1469, 1741, 2815, 2984
PsrI GAACNNNNNNTAC 2 cut(s) 377, 409
PstNI CAGNNNCTG 1 cut(s) 928
PsuI RGATCY 5 cut(s) 914, 1226, 1291, 1516, 1782
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 7 cut(s) 231, 395, 926, 1171, 1808, 1990, 2166
RsaNI GTAC 7 cut(s) 230, 394, 925, 1170, 1807, 1989, 2165
RseI CAYNNNNRTG 1 cut(s) 1008
Rsr2I CGGWCCG 1 cut(s) 1028
RsrII CGGWCCG 1 cut(s) 1028
SatI GCNGC 3 cut(s) 214, 250, 1355
Sau96I GGNCC 7 cut(s) 668, 1028, 1122, 1469, 1741, 2815, 2984
ScaI AGTACT 2 cut(s) 1171, 2166
SchI GAGTC 5 cut(s) 689, 796, 1744, 2086, 2816
ScrFI CCNGG 3 cut(s) 652, 2493, 3054
SduI GDGCHC 3 cut(s) 2360, 2435, 2932
SfaNI GCATC 3 cut(s) 1265, 2530, 2806
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 3 cut(s) 1028, 1741, 2815
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 7 cut(s) 388, 640, 677, 784, 1711, 1802, 2087
SmoI CTYRAG 7 cut(s) 388, 640, 677, 784, 1711, 1802, 2087
SsiI CCGC 2 cut(s) 326, 2838
SspI AATATT 1 cut(s) 2188
StyD4I CCNGG 3 cut(s) 650, 2491, 3052
StyI CCWWGG 4 cut(s) 1125, 2311, 2546, 2811
TaaI ACNGT 4 cut(s) 781, 1174, 1559, 3044
TaiI ACGT 2 cut(s) 1421, 2086
TaqI TCGA 9 cut(s) 678, 1076, 1239, 1409, 1464, 1881, 2033, 2666, 2822
TaqII GACCGA 2 cut(s) 687, 1045
TatI WGTACW 3 cut(s) 229, 1169, 2164
TfiI GAWTC 7 cut(s) 753, 1835, 1900, 2052, 2063, 2128, 2254
TscAI CASTG 6 cut(s) 83, 1123, 2141, 2248, 2770, 2856
TseFI GTSAC 1 cut(s) 3126
TseI GCWGC 3 cut(s) 213, 249, 1354
Tsp45I GTSAC 1 cut(s) 3126
TspGWI ACGGA 3 cut(s) 355, 697, 1098
TspRI CASTG 6 cut(s) 83, 1123, 2141, 2248, 2770, 2856
Van91I CCANNNNNTGG 2 cut(s) 911, 1188
Vha464I CTTAAG 1 cut(s) 2087
VpaK11BI GGWCC 3 cut(s) 1028, 1741, 2815
XbaI TCTAGA 5 cut(s) 1288, 1399, 1513, 1840, 1948
XceI RCATGY 5 cut(s) 526, 649, 3105, 3184, 3239
XhoI CTCGAG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 1561
XmnI GAANNNNTTC 5 cut(s) 831, 1579, 1967, 2337, 3043
ZrmI AGTACT 2 cut(s) 1171, 2166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.