RchiOBHm_Chr3g0478311

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000047
Physical Location & Seq
Forward (+)
24112099 .. 24115338
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44352

Sequence Viewer

Length: 3240 bp
ATGCCCACTCTGTTCCTCCATTTCTTCCTTTTCTTATTCACAACCACTGTTTCTAACCTCATCCCCGCAGTTCACAGCAACTGCATTGAAGCCCAGCAACAATCATTGCTCCATTTCAAACAAAGTCTTCAATTTAATTCTTCCGAATCCTCCAAGCTTATCACATGGAATTCGAGCACCGACTGCTGTTCTTGGCACGGTGTAACTTGCAGCACCAATGGGCGTGTTGTCGGACTTGATCTCAGCAGCGAGTCTATCTTCTGCAGCATTGACAATTCAAGCAATCTCTTCCAACTTCAACATCTTCAGAGCCTCAATTTGGCCGATAACAACTTCAATGACTCTTCAATTCCATCTGCAATCGGAAAGCTTGCAAATTTGAGGTATTTGAATTTAAGTGGTGCTTATTTTTCTGGGCAAATTCCCATTGAGGTTGCACGCTTGAAAAGGTTGGTAGTTCTTGATCTCTCTAAGCATCATTTCCCGTGGAAGGTGTTAGACCTTGAGAAATCGAAGTTTGGCACTGCAATCCAGTACCTTAGAGACCGTACAGCGTTAAAACTTGAGAACCCGAATTTAGGCACTTTAATCCAGAACCTTACAGAGCTTACAAAGTTAAATCTTGAATCTGTAAAGATATCAGGACAGGGGAGTGACTGGTGCGAAGCCATATCATCTTCACTGCCAAATCTGAGGGTGTTGAGCTTGTCTTATTGTGGTCTTTCAGGCCCTATTTGTGAGTCCCTTGCAAAGCTTCAATCTCTGTATGAGATTGACTTGTCATATAACTCCTTCTATGCTCCGGTTCCAAGATTCTTTGCCAATTTTCCAAACTTGACTTACCTGAGTCTTAGTTATTCCTACTTGCTCGGAACATTTCCCCAAGAGATCTTTCAGATACCTTCCCTACAAACCATTGGCCTTTCTGGTAATGGTGTTCTTCATGGTTCCTTTCCAGAATTTCCAAACAATGGGTCTCTTCGATCCTTAATTGTAGATGGGACAAGTTTTTCAGGTGACCTGCCCAACTCTATTGGAAATCTTAAGATGTTGTCAAGTGTATATCTTTCAGAGTGCAATTTCACAGGATCAGTTCCCAAGTCGATTGAAAACCTCACACTATTGGCTGACCTGGACATTTCCGGGAACAGATTTAATAGTCCCATTAGTTCTATTCACTGGGAAACCCTTGTTAATCTGGAACGCCTCGATTTGAGCAACAATCAACTCTATGGGACTATTCCTTCATCTGTTGTTTCTCTTCCCAAACTGGAAACAGTAAGTCTATCCCACAATCGGTTCTCGGTGATAGAAGCTCCTCTTCCTAATTCCACTTCTGCTTTATCTTCTCTGGACCTTCAGTCCAACAAGCTTCAAGGCGAGATACCTAATTGGATTTTGAGTCTCAAATCTCTTAATTCCCTTGATCTTTCTAACAACTCCTTGGTGACTCTAGAAGCTCCTCTTCCTAATTCCACTTCTGCTTTATCTTCTCTGGAGCTTCATTCCAACAAACTTCAAGGTATCCATTCCTCATATTCCTTCCTTCAGCTTAATTACTTGGGATTAGCTTCTAACAAGTTGACAAGATTCCCAGACTTCTTGAGAAATCAATCCCATTTAACCAACTTGGACCTCTCAGACAACCAGATTCAAGGACAGATACCCAATTGGATTTGGATTTTGGATTCTCTTCAAAAATTAAATCTTTCTTGTAACTCCTTGGAAAGTTTAGAAGCTCCTCTACTTAATTCTACCTATGTTCATGATCTGTCAGTGGTTGATCTTCATTCAAACCAGCTTCAGGGACATTTCCCCTTGTTCTTCAGCAGTAGGTATCTAGATTATTCAAGAAATAATTTCAGCTCTAGTATACCGACTAACATTGGTGACTTCATTTTTACTCGGTCTTACCTTTCTCTTTCAAGCAATAACTTCCACGGGGCCATTCCAAAATCAATATGCAACGCAAGTGGTCGGGTTCTTGATCTGTCCAATAATTCCTTGAGTGGAAACATTCCCCAATGCTTGACTCAATCACCTCAGCTTTCGGTCATTGATTTGAAGAGAAACAACCTGAGTGGCACAATTCCAGATAATTTTCTCAGCGGTTGTGAGCTACAAACTCTAGACCTCAGTAACAATCAAATACAAGGCCAGTTTCCGAAATCTCTTGTCAACTGCTCAAGTTTAGGGGTTTTAAATCTCGGAAACAATCAGATAACAGATACTTTTCCATGCTTTTTAATGAGCTTATCTACCTTGCGTGTCCTTGTTTTGCTGTCCAACAAATTTTATGGAAGCATTGGATGTCCTAAGACCAATGGCACATGGCCTGTGCTTCAAATAATAAATTTAGCTCACAACAATTTCAGCGGTGATATGCCAGGAAGATTGTCTCTGACATGGCAGGCTATGGTGTCTAATGAGGATGATTCTCCAACTAACCTTGGATTTTCTGATCAGCCGTGCAAGAATAATCTATTTTATATGGCTGATAAATCTTGTCTTTTGAATAGTTTTTTTCAAAGAGGTTTTGTTTATTATTATAGAGATGCAATTACGACTATCATCAAAGGTTTGGAGTTGGATTTTGTTAAGATTCTAACTACATTCACCTTGATTGACTACTCCTCCAACAAATTCAACGGATCAATACCTGAGGAAATTGGAGAGTTGAAATCACTATATTTCCTCAATTTATCCGGTAATGCTTTCACCGGAAACATCCCATCATCATTTGGTAAGATGCGGAAATTGCAGTCCTTAGACCTCTCACAGAACCACCTGAGCGGCCAAATTCCACCGCAGCTTGCAACTCTCACCTTCCTTTCGTCCTTGGATGTCTCATATAATCAACTGACGGGAAGGATCCCAACCGGCACTCAATTTTCAACATTTCCAAATACCTCCTTCGAGGGTAACAAAGGATTATGGGGGCCTCCTCTGACAGGGGATACAGCAATCGTATTGCCACCACCAAAGTTTAATGGAAGCTCAAGTAATCCGAATTCTGGAGATGAGATTGATTGGAATATTATCAGTGCTGAAATTGGATTTACATGTGGGTTTGGAATTGCCGTCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTACAGAGCTATGTTTAACATCCTGTTCAAGATATTCCCTCAGCTGGAACACAGATTTGGTAATCACAGAAGGCATGTTTACATAAATCAAAAGTATTGGAGACGTTTAAATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1079

Amino Acids

119.78

Weight (kDa)

6.52

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 71 7.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 87 - 306 9.5e-15 Leucine-rich repeat region
LRR_8 PF13855 254 - 311 9.8e-08 Leucine rich repeat
LRR_14 PF23598 275 - 481 1.3e-10 Leucine-rich repeat region
LRR_4 PF12799 399 - 432 9.7e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 422 - 482 1.7e-08 Leucine rich repeat
LRR_8 PF13855 517 - 575 5.6e-06 Leucine rich repeat
LRR_8 PF13855 706 - 764 5.5e-07 Leucine rich repeat
LRR_4 PF12799 706 - 743 4.3e-07 Leucine Rich repeats (2 copies)
LRR_14 PF23598 884 - 949 2.7e-06 Leucine-rich repeat region
LRR_8 PF13855 895 - 954 1.5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1029
AccB7I CCANNNNNTGG 1 cut(s) 971
AccBSI CCGCTC 1 cut(s) 2793
AccI GTMKAC 1 cut(s) 1873
AciI CCGC 6 cut(s) 66, 2109, 2376, 2752, 2793, 2807
AclWI GGATC 5 cut(s) 978, 1096, 2659, 2866, 2879
AcoI YGGCCR 2 cut(s) 321, 2794
AcuI CTGAAG 5 cut(s) 290, 1343, 1532, 1787, 1810
AfaI GTAC 2 cut(s) 536, 550
AfiI CCNNNNNNNGG 9 cut(s) 319, 490, 578, 971, 1296, 1804, 2951, 3014, 3166
AflII CTTAAG 1 cut(s) 1043
AflIII ACRYGT 1 cut(s) 3062
AhdI GACNNNNNGTC 1 cut(s) 1360
AjnI CCWGG 2 cut(s) 1131, 2386
AjuI GAANNNNNNNTTGG 4 cut(s) 876, 908, 3162, 3194
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 6 cut(s) 537, 981, 1409, 2403, 2851, 3217
AlwI GGATC 5 cut(s) 978, 1096, 2659, 2866, 2879
AlwNI CAGNNNCTG 1 cut(s) 81
AoxI GGCC 8 cut(s) 321, 727, 919, 1944, 2155, 2333, 2794, 2939
ApeKI GCWGC 4 cut(s) 210, 246, 264, 2809
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AspS9I GGNCC 5 cut(s) 728, 1354, 1633, 1944, 2939
AsuC2I CCSGG 1 cut(s) 1144
AsuHPI GGTGA 9 cut(s) 1028, 1318, 1459, 1901, 2031, 2390, 2608, 2710, 2815
AvaII GGWCC 2 cut(s) 1354, 1633
AxyI CCTNAGG 1 cut(s) 2661
BamHI GGATCC 1 cut(s) 2871
BarI GAAGNNNNNNTAC 2 cut(s) 1728, 1760
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 179
BbvCI CCTCAGC 2 cut(s) 2043, 3162
BbvI GCAGC 4 cut(s) 222, 258, 276, 2821
BccI CCATC 4 cut(s) 361, 992, 2740, 3102
BceAI ACGGC 2 cut(s) 2452, 3065
BciT130I CCWGG 2 cut(s) 1133, 2388
BciVI GTATCC 2 cut(s) 1535, 2950
BclI TGATCA 1 cut(s) 2461
BcnI CCSGG 1 cut(s) 1144
BcoDI GTCTC 6 cut(s) 537, 981, 1409, 2403, 2851, 3217
BfaI CTAG 4 cut(s) 1454, 1841, 1869, 2129
BfmI CTRYAG 1 cut(s) 262
BfrI CTTAAG 1 cut(s) 1043
BfuAI ACCTGC 1 cut(s) 1029
BfuI GTATCC 2 cut(s) 1535, 2950
BglII AGATCT 1 cut(s) 888
BisI GCNGC 5 cut(s) 211, 247, 265, 2794, 2810
BlsI GCNGC 5 cut(s) 212, 248, 266, 2795, 2811
Bme1390I CCNGG 3 cut(s) 1133, 1144, 2388
Bme18I GGWCC 2 cut(s) 1354, 1633
BmeRI GACNNNNNGTC 1 cut(s) 1360
BmgT120I GGNCC 5 cut(s) 728, 1354, 1633, 1944, 2939
BmiI GGNNCC 5 cut(s) 807, 949, 1945, 2873, 2940
BmrFI CCNGG 3 cut(s) 1133, 1144, 2388
BmrI ACTGGG 1 cut(s) 1189
BmsI GCATC 3 cut(s) 484, 2545, 2739
BmuI ACTGGG 1 cut(s) 1189
BpiI GAAGAC 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 1517, 3036
Bpu10I CCTNAGC 3 cut(s) 2043, 2789, 3162
BpuEI CTTGAG 6 cut(s) 524, 584, 1624, 2026, 2170, 2983
BpuMI CCSGG 1 cut(s) 1144
BsaI GGTCTC 2 cut(s) 537, 981
BsaJI CCNNGG 6 cut(s) 485, 1443, 1722, 1939, 2449, 2838
BsaWI WCCGGW 3 cut(s) 802, 2705, 2720
BsaXI ACNNNNNCTCC 2 cut(s) 2618, 2648
Bsc4I CCNNNNNNNGG 9 cut(s) 319, 490, 578, 971, 1296, 1804, 2951, 3014, 3166
Bse118I RCCGGY 1 cut(s) 2879
Bse1I ACTGG 5 cut(s) 532, 662, 1184, 1275, 2158
Bse21I CCTNAGG 1 cut(s) 2661
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 2 cut(s) 1133, 2388
BseDI CCNNGG 6 cut(s) 485, 1443, 1722, 1939, 2449, 2838
BseGI GGATG 6 cut(s) 60, 2315, 2437, 2727, 2848, 3141
BseLI CCNNNNNNNGG 9 cut(s) 319, 490, 578, 971, 1296, 1804, 2951, 3014, 3166
BseMI GCAATG 1 cut(s) 104
BseNI ACTGG 5 cut(s) 532, 662, 1184, 1275, 2158
BseRI GAGGAG 5 cut(s) 1308, 1452, 1731, 2623, 2934
BseXI GCAGC 4 cut(s) 222, 258, 276, 2821
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 8 cut(s) 323, 729, 921, 1946, 2157, 2335, 2796, 2941
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 5 cut(s) 803, 1143, 2706, 2721, 2880
BslFI GGGAC 5 cut(s) 727, 1015, 1146, 1249, 1821
BslI CCNNNNNNNGG 9 cut(s) 319, 490, 578, 971, 1296, 1804, 2951, 3014, 3166
BsmAI GTCTC 6 cut(s) 537, 981, 1409, 2403, 2851, 3217
BsmBI CGTCTC 1 cut(s) 3217
BsmFI GGGAC 5 cut(s) 727, 1015, 1146, 1249, 1821
BsnI GGCC 8 cut(s) 323, 729, 921, 1946, 2157, 2335, 2796, 2941
Bso31I GGTCTC 2 cut(s) 537, 981
Bsp1286I GDGCHC 1 cut(s) 179
BspACI CCGC 6 cut(s) 66, 2109, 2376, 2752, 2793, 2807
BspANI GGCC 8 cut(s) 323, 729, 921, 1946, 2157, 2335, 2796, 2941
BspHI TCATGA 1 cut(s) 1765
BspLI GGNNCC 5 cut(s) 807, 949, 1945, 2873, 2940
BspMAI CTGCAG 1 cut(s) 266
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 5 cut(s) 978, 1096, 2659, 2866, 2879
BspTI CTTAAG 1 cut(s) 1043
BspTNI GGTCTC 2 cut(s) 537, 981
BsrBI CCGCTC 1 cut(s) 2793
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 2879
BsrI ACTGG 5 cut(s) 532, 662, 1184, 1275, 2158
BssAI RCCGGY 1 cut(s) 2879
BssECI CCNNGG 6 cut(s) 485, 1443, 1722, 1939, 2449, 2838
BssNAI GTATAC 1 cut(s) 1874
BssT1I CCWWGG 4 cut(s) 1443, 1722, 2449, 2838
Bst1107I GTATAC 1 cut(s) 1874
Bst2UI CCWGG 2 cut(s) 1133, 2388
Bst4CI ACNGT 4 cut(s) 49, 200, 548, 1279
Bst6I CTCTTC 8 cut(s) 293, 349, 984, 1266, 1326, 1470, 1698, 2060
BstAFI CTTAAG 1 cut(s) 1043
BstAPI GCANNNNNTGC 1 cut(s) 183
BstC8I GCNNGC 4 cut(s) 372, 439, 2412, 2814
BstDSI CCRYGG 2 cut(s) 485, 1939
BstEII GGTNACC 1 cut(s) 1016
BstENI CCTNNNNNAGG 1 cut(s) 2949
BstF5I GGATG 6 cut(s) 60, 2315, 2437, 2727, 2848, 3141
BstMAI GTCTC 6 cut(s) 537, 981, 1409, 2403, 2851, 3217
BstMWI GCNNNNNNNGC 2 cut(s) 183, 2758
BstNI CCWGG 2 cut(s) 1133, 2388
BstNSI RCATGY 2 cut(s) 3066, 3200
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 3 cut(s) 1131, 1142, 2386
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 222, 258, 276, 2821
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 888, 2871
BstYI RGATCY 2 cut(s) 888, 2871
BstZ17I GTATAC 1 cut(s) 1874
Bsu36I CCTNAGG 1 cut(s) 2661
BsuI GTATCC 2 cut(s) 1535, 2950
BsuRI GGCC 8 cut(s) 323, 729, 921, 1946, 2157, 2335, 2796, 2941
BtgI CCRYGG 2 cut(s) 485, 1939
BtsCI GGATG 6 cut(s) 60, 2315, 2437, 2727, 2848, 3141
BtsI GCAGTG 2 cut(s) 522, 680
BtsIMutI CAGTG 6 cut(s) 45, 522, 680, 1177, 1782, 3049
BveI ACCTGC 1 cut(s) 1029
Cac8I GCNNGC 4 cut(s) 372, 439, 2412, 2814
CaiI CAGNNNCTG 1 cut(s) 81
CciI TCATGA 1 cut(s) 1765
Cfr10I RCCGGY 1 cut(s) 2879
Cfr13I GGNCC 5 cut(s) 728, 1354, 1633, 1944, 2939
Csp6I GTAC 2 cut(s) 535, 549
CspCI CAANNNNNGTGG 4 cut(s) 1954, 1989, 2062, 2097
CviAII CATG 8 cut(s) 165, 944, 1766, 2238, 2331, 2406, 3063, 3197
CviQI GTAC 2 cut(s) 535, 549
DraI TTTAAA 2 cut(s) 2202, 3231
DriI GACNNNNNGTC 1 cut(s) 1360
EaeI YGGCCR 2 cut(s) 321, 2794
Eam1104I CTCTTC 8 cut(s) 293, 349, 984, 1266, 1326, 1470, 1698, 2060
Eam1105I GACNNNNNGTC 1 cut(s) 1360
EarI CTCTTC 8 cut(s) 293, 349, 984, 1266, 1326, 1470, 1698, 2060
Eco130I CCWWGG 4 cut(s) 1443, 1722, 2449, 2838
Eco31I GGTCTC 2 cut(s) 537, 981
Eco32I GATATC 1 cut(s) 639
Eco47I GGWCC 2 cut(s) 1354, 1633
Eco57I CTGAAG 5 cut(s) 290, 1343, 1532, 1787, 1810
Eco81I CCTNAGG 1 cut(s) 2661
Eco91I GGTNACC 1 cut(s) 1016
EcoNI CCTNNNNNAGG 1 cut(s) 2949
EcoO109I RGGNCCY 2 cut(s) 728, 2939
EcoO65I GGTNACC 1 cut(s) 1016
EcoRI GAATTC 2 cut(s) 169, 3010
EcoRII CCWGG 2 cut(s) 1131, 2386
EcoRV GATATC 1 cut(s) 639
EcoT14I CCWWGG 4 cut(s) 1443, 1722, 2449, 2838
ErhI CCWWGG 4 cut(s) 1443, 1722, 2449, 2838
Esp3I CGTCTC 1 cut(s) 3217
FaeI CATG 8 cut(s) 168, 947, 1769, 2241, 2334, 2409, 3066, 3200
FalI AAGNNNNNCTT 6 cut(s) 388, 420, 1305, 1337, 1449, 1481
FaqI GGGAC 5 cut(s) 727, 1015, 1146, 1249, 1821
FatI CATG 8 cut(s) 164, 943, 1765, 2237, 2330, 2405, 3062, 3196
FauI CCCGC 1 cut(s) 73
FbaI TGATCA 1 cut(s) 2461
FblI GTMKAC 1 cut(s) 1873
Fnu4HI GCNGC 5 cut(s) 211, 247, 265, 2794, 2810
FokI GGATG 6 cut(s) 47, 2322, 2444, 2714, 2855, 3128
Fsp4HI GCNGC 5 cut(s) 211, 247, 265, 2794, 2810
FspBI CTAG 4 cut(s) 1454, 1841, 1869, 2129
GluI GCNGC 5 cut(s) 211, 247, 265, 2794, 2810
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 2 cut(s) 1517, 3036
HaeIII GGCC 8 cut(s) 323, 729, 921, 1946, 2157, 2335, 2796, 2941
HapII CCGG 5 cut(s) 803, 1143, 2706, 2721, 2880
Hin1II CATG 8 cut(s) 168, 947, 1769, 2241, 2334, 2409, 3066, 3200
HincII GTYRAC 2 cut(s) 1584, 2179
HindII GTYRAC 2 cut(s) 1584, 2179
HindIII AAGCTT 4 cut(s) 155, 368, 752, 1370
HpaII CCGG 5 cut(s) 803, 1143, 2706, 2721, 2880
HphI GGTGA 9 cut(s) 1028, 1318, 1459, 1901, 2031, 2390, 2608, 2710, 2815
Hpy166II GTNNAC 5 cut(s) 73, 1584, 1874, 2179, 3202
Hpy8I GTNNAC 5 cut(s) 73, 1584, 1874, 2179, 3202
Hpy99I CGWCG 1 cut(s) 3086
HpyCH4III ACNGT 4 cut(s) 49, 200, 548, 1279
HpyCH4IV ACGT 1 cut(s) 3226
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 2758
HpySE526I ACGT 1 cut(s) 3226
Hsp92II CATG 8 cut(s) 168, 947, 1769, 2241, 2334, 2409, 3066, 3200
Ksp22I TGATCA 1 cut(s) 2461
LmnI GCTCC 6 cut(s) 114, 805, 1321, 1465, 1498, 1744
Lsp1109I GCAGC 4 cut(s) 222, 258, 276, 2821
LweI GCATC 3 cut(s) 484, 2545, 2739
MaeI CTAG 4 cut(s) 1454, 1841, 1869, 2129
MaeII ACGT 1 cut(s) 3226
MaeIII GTNAC 9 cut(s) 202, 653, 1016, 1447, 1715, 1889, 2138, 2921, 3087
MbiI CCGCTC 1 cut(s) 2793
MfeI CAATTG 1 cut(s) 1669
MflI RGATCY 2 cut(s) 888, 2871
MhlI GDGCHC 1 cut(s) 179
MlyI GAGTC 7 cut(s) 260, 335, 749, 856, 1411, 1444, 2026
MmeI TCCRAC 8 cut(s) 211, 316, 1389, 1533, 2310, 2465, 2568, 2661
MspA1I CMGCKG 3 cut(s) 2109, 2376, 3166
MspCI CTTAAG 1 cut(s) 1043
MspI CCGG 5 cut(s) 803, 1143, 2706, 2721, 2880
MspR9I CCNGG 3 cut(s) 1133, 1144, 2388
MunI CAATTG 1 cut(s) 1669
MvaI CCWGG 2 cut(s) 1133, 2388
MwoI GCNNNNNNNGC 2 cut(s) 183, 2758
NciI CCSGG 1 cut(s) 1144
NlaIII CATG 8 cut(s) 168, 947, 1769, 2241, 2334, 2409, 3066, 3200
NlaIV GGNNCC 5 cut(s) 807, 949, 1945, 2873, 2940
NmuCI GTSAC 5 cut(s) 653, 1016, 1447, 1889, 3087
NspI RCATGY 2 cut(s) 3066, 3200
PagI TCATGA 1 cut(s) 1765
PciI ACATGT 1 cut(s) 3062
PfeI GAWTC 8 cut(s) 146, 626, 813, 1590, 1651, 1688, 2435, 2602
PflMI CCANNNNNTGG 1 cut(s) 971
PfoI TCCNGGA 1 cut(s) 1142
PkrI GCNGC 5 cut(s) 212, 248, 266, 2795, 2811
PleI GAGTC 7 cut(s) 259, 335, 748, 855, 1410, 1444, 2026
PpsI GAGTC 7 cut(s) 259, 335, 748, 855, 1410, 1444, 2026
PscI ACATGT 1 cut(s) 3062
Psp6I CCWGG 2 cut(s) 1131, 2386
PspEI GGTNACC 1 cut(s) 1016
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 2 cut(s) 1131, 2386
PspN4I GGNNCC 5 cut(s) 807, 949, 1945, 2873, 2940
PspPI GGNCC 5 cut(s) 728, 1354, 1633, 1944, 2939
PstI CTGCAG 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 2 cut(s) 888, 2871
PvuII CAGCTG 1 cut(s) 3166
RsaI GTAC 2 cut(s) 536, 550
RsaNI GTAC 2 cut(s) 535, 549
SatI GCNGC 5 cut(s) 211, 247, 265, 2794, 2810
Sau96I GGNCC 5 cut(s) 728, 1354, 1633, 1944, 2939
SchI GAGTC 7 cut(s) 260, 335, 749, 856, 1411, 1444, 2026
ScrFI CCNGG 3 cut(s) 1133, 1144, 2388
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 3 cut(s) 484, 2545, 2739
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 2 cut(s) 1354, 1633
SmlI CTYRAG 7 cut(s) 503, 563, 1043, 1603, 2005, 2185, 2998
SmoI CTYRAG 7 cut(s) 503, 563, 1043, 1603, 2005, 2185, 2998
SsiI CCGC 6 cut(s) 66, 2109, 2376, 2752, 2793, 2807
SspI AATATT 1 cut(s) 3037
SspMI CTAG 4 cut(s) 1454, 1841, 1869, 2129
StyD4I CCNGG 3 cut(s) 1131, 1142, 2386
StyI CCWWGG 4 cut(s) 1443, 1722, 2449, 2838
TaaI ACNGT 4 cut(s) 49, 200, 548, 1279
TaiI ACGT 1 cut(s) 3229
TaqI TCGA 6 cut(s) 173, 512, 982, 1103, 1209, 2916
TaqII GACCGA 2 cut(s) 1896, 2041
TauI GCSGC 1 cut(s) 2796
TfiI GAWTC 8 cut(s) 146, 626, 813, 1590, 1651, 1688, 2435, 2602
TscAI CASTG 6 cut(s) 52, 529, 687, 1184, 1782, 3049
TseFI GTSAC 5 cut(s) 653, 1016, 1447, 1889, 3087
TseI GCWGC 4 cut(s) 210, 246, 264, 2809
Tsp45I GTSAC 5 cut(s) 653, 1016, 1447, 1889, 3087
TspDTI ATGAA 6 cut(s) 932, 1236, 1493, 1754, 1778, 1885
TspGWI ACGGA 1 cut(s) 2664
TspRI CASTG 6 cut(s) 52, 529, 687, 1184, 1782, 3049
Van91I CCANNNNNTGG 1 cut(s) 971
Vha464I CTTAAG 1 cut(s) 1043
VpaK11BI GGWCC 2 cut(s) 1354, 1633
XagI CCTNNNNNAGG 1 cut(s) 2949
XbaI TCTAGA 3 cut(s) 1453, 1840, 2128
XceI RCATGY 2 cut(s) 3066, 3200
XmiI GTMKAC 1 cut(s) 1873
XspI CTAG 4 cut(s) 1454, 1841, 1869, 2129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.