Rroxscaffold_4G00301990

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000047
Physical Location & Seq
Forward (+)
22359102 .. 22362296
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301990.1

Sequence Viewer

Length: 3153 bp
ATGAAAACTTTGCTACATTTCTTCCTTTCCTTGATCACACTCTGGGTCAGTATCATCATCCCAGCAGTTCACAGCCAGTGTATTAAAGACCAGCAACTATCATTGCTCCAATTCAAGAAAAGCCTCGTGTTCGATGCTGATTTCGGTCCTTCCACCAAGATTGTTTCTTGGAATGCAAGTACTGATTGTTGTTCCTGGGTGGGCGTCACTTGCAGCCGTAATGGGCGTGTTCTGGGTCTTGACATAAGCAGCCAAGGTATCTCAGCTGGAATTGACAATGCCAGCAGTCTCTTCCATCTTCATTATCTTCAAAGCCTCAATCTGGCGGACAACCAACTTGGCAATTACTCTCAATCAATTCCATCCGCCATAGGAGATCTCCTGAACTTGAGGTATCTGAATTTATCTCTTAATGATTATTCAGGGCAAATTCCCATCCAGATTTCTCGCTTGAGGAGGTTAGTAGTTCTTGATTTTTCTAACAATTATGGCCTTGGAAGTCCAAATTTACCCATTTTGGTTCACGACTTCACAGAGCTTAGAGAGTTATATCTTGATGGTGTCCTAATATCAGAACAGGGGATCAGTGAGTGGGGCCGAGCCATATCATCTTCCATTCCCAACCTCAGGGTCCTGAGCATGTTCAATTGTCATCTCTCAGGCCGTATTCTCGAGTCCCTTGCCAAGCTTCAGTATCTATCTGTAATTAGTTTGGCATACAACAATATCTCTGCGCCAGTTCCAGGATTATTTGCCAACTTTTCAAACTTGACCGTCTTGGGTCTCAGAAATTGCGGGTTGCATGGAACATTTCCCAAAGAGATCTTTCAGTTACCTTCTCTACAAAGTATTGACCTTTCAATTAATGACCAACTTGATGGTTCCTTGCCAGAATTCCCAAGGAATGGATCTCTTCAGTACCTCAATCTGTGGTCAACAAATTTTTCAGGGTTATTGCCAAATTCTATTGGCAACCTCAAAACGTTGTCCATCATAGATATTCGTGTTTGTAAGTTCACTGGACCGATCCCCAAGTCAATGACAAACCTTACACAATTGATTTATTTGTTGATGTCTTATAACAATTTGGAAGGTTCAATTCCCTCATTCAGTTGGGCCAAGAATGTTGTCAGCATAGACCTTTCCCACAATGGTCTAACAGGTACTATTAGTTCCACCCACTGGAGAAACCTTACTAAGCTATCTTATCTCAGTTTGGGATCCAATAAGCTCAATGGGAATATCCAAGCATCTCTGTTTTCTATTCCCCTATTGTCTAGTCTAGATCTTTCCAGCAACCAATTCTCTGGTCCATTCCCTGAAATTTCAAATGTGTCTTCCCACTTGCTGAATGGTCCTGATCTTGAACTTGTTTTGAGTAGCAACAATCTCCAAGGGCCACTACCTATGTCTATCTTTTGTTTGCTACGTCTTACCACTCTAGATCTTTCTTCAAATAATTTAAGTGGCTCGTTTCCTCTTGATCGTCTACACCAACTGAGAAATCTTTCTAAACTTGATCTTTCACACAATAACTTGTTTCTTACCCATGATTATACCAATTTCTCATATTCCTCATCTTCTCAACTCGGTGACTTGAGGTTGGTGTCATTGAAATTGAGAACATTTCCTAATTTCTTGAGAAATCAATCTTACTTGTACCGTTTGGAGCTTTCAGATAACCAGATAAATGGCAAGATACCCAACTGGATTTGGAGTCTTAGTGATCTTAGTTACCTAAATCTTTCTTGCAACTCCCTAGACTCTCTAGAAGTTCCTTCAAACAATCTCGGTAACTTAAGGTACCTTGACCTCCATTCCAACCAGTTTCATGGGCAAATCCCAATTTTTCCAACACCTTTCAGTGCCTATTATCTAGATTTCTCAAGGAATTATTTCAGCTCTATCATATCGAGTACCATTGGAGATATGTTACTTGAAGCTGGATTTTTGTCGCTTTCGAGCAATAACCTCAATGGGATCATTCCAGAATCATTATGCAATTCAGAATCTCTTGAGGTTCTTGATCTGTCCAATAATTCTCTGAGTGGCACGATTCCCCAGTGTTTAGCTACAATGAAGACGCTTGCAATACTCAATGTAAGGAGAAACAAGCTTACATATGTTAATGAATTCTCTCAGAATTGCAGTTTAAAAACTCTGGACATCAGTGGAAATCAGATTCAAGGCCAGTTTCTAAAATCTCTTGTCAACTGCACCCAGTTAGAGGTTTTAAACCTTGGAAACAATCTGATAACAGAACCATTTCCATGCTTTTTGAGGAACACATCCACCTTGCGTGTTCTTGTCTTGCGATCCAATAAATTTTATGGGGACATTGGATGCCGCGACACTAAGGGCACTTGGCCAGTACTTCAAATCATAGACCTAGCTCACAACAATTTTTATGGCGAAATACCTGAAACAACTCTAACAACTTGGCAGGCGATGAGGAATAGCAAAGATAATGCCCCATGGAATAACAATAGCCATCAGTTGGTGGAAGGAGTTTATTATCGAGAAGATACAGTCCCGGTTACAACCAAAGGTTCAGAGATACAGCTGATGAATTTCAACGGATCAATACCAGAGGAAATTGGAGAACTCAAATTATTGTATGCCCTCAACTTGTCCAACAATGCTTTCACAGGTGCAGTTCCATCATCATTAAGTAACTTGAGTGAGCTAGAGTCTTTGGACCTCTCGAAAAACAAACTGAGCGGTCAAATCCCACCAGAGCTTACAAAACTCACTTTCCTTGCATTCTTGAATCTCTCATATAATCAATTGGTCGGGAGGATACCAAGCGGTAATCAATTTTCAACATTTGAAGCAGCTTCCTTCCAAGGTAACAAAGGATTATGGGGGCCTCCTTTAAGAGCAGATAATAACACAGGGTTCTCACCACCAAAGCAGGAAGGTAACCATTCAAATCCTGGACATGAGATTGATTGGGATATTATCTGTCCTGAAATTGGGTTTACATGTGGGTTTGGGATTGCCATCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTACAGAGCTATGTATGACATGCTTCTAAAGATATTCCCTCAGCTGGAACAAAGATTTGGTCATCACAGGAGACATGTTTATGTACATCAGAGATACTGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1050

Amino Acids

117.34

Weight (kDa)

6.9

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 72 3.5e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 77 - 186 1.5e-07 Leucine-rich repeat region
LRR_14 PF23598 304 - 360 2.1e-07 Leucine-rich repeat region
LRR_8 PF13855 375 - 435 6.9e-06 Leucine rich repeat
LRR_8 PF13855 552 - 610 1.6e-06 Leucine rich repeat
LRR_8 PF13855 651 - 706 4.8e-07 Leucine rich repeat
LRR_4 PF12799 717 - 753 5.1e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 872 - 930 8.9e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
Acc65I GGTACC 1 cut(s) 1803
AccB1I GGYRCC 1 cut(s) 1803
AccB7I CCANNNNNTGG 3 cut(s) 905, 1182, 2497
AccBSI CCGCTC 1 cut(s) 2721
AccI GTMKAC 1 cut(s) 1489
AccII CGCG 1 cut(s) 2349
AciI CCGC 6 cut(s) 326, 366, 795, 2347, 2721, 2808
AclI AACGTT 1 cut(s) 983
AclWI GGATC 8 cut(s) 590, 916, 1021, 1215, 1228, 1988, 2310, 2587
AcoI YGGCCR 1 cut(s) 2366
AcuI CTGAAG 2 cut(s) 674, 899
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 8 cut(s) 181, 920, 1165, 1661, 1805, 1918, 2373, 3129
AfiI CCNNNNNNNGG 9 cut(s) 322, 627, 743, 905, 1182, 2227, 2497, 2975, 3088
AflII CTTAAG 1 cut(s) 1798
AflIII ACRYGT 2 cut(s) 2984, 3118
AjnI CCWGG 3 cut(s) 194, 742, 2935
AjuI GAANNNNNNNTTGG 4 cut(s) 2627, 2659, 3084, 3116
Alw26I GTCTC 4 cut(s) 293, 788, 3109, 3139
AlwI GGATC 8 cut(s) 590, 916, 1021, 1215, 1228, 1988, 2310, 2587
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 8 cut(s) 490, 595, 661, 1116, 1397, 2188, 2366, 2867
ApeKI GCWGC 3 cut(s) 213, 249, 2834
ArsI GACNNNNNNTTYG 2 cut(s) 3088, 3120
AseI ATTAAT 1 cut(s) 864
Asp700I GAANNNNTTC 3 cut(s) 1507, 1895, 2265
Asp718I GGTACC 1 cut(s) 1803
AspLEI GCGC 1 cut(s) 736
AsuC2I CCSGG 1 cut(s) 2534
AsuHPI GGTGA 2 cut(s) 1604, 2895
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 6 cut(s) 146, 631, 1022, 1310, 1355, 2698
AxyI CCTNAGG 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 2363
BalI TGGCCA 1 cut(s) 2368
BamHI GGATCC 1 cut(s) 1220
BanI GGYRCC 1 cut(s) 1803
BauI CACGAG 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 1329, 2087
BbvCI CCTCAGC 1 cut(s) 3084
BbvI GCAGC 3 cut(s) 225, 261, 2846
BceAI ACGGC 2 cut(s) 201, 648
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BciT130I CCWGG 3 cut(s) 196, 744, 2937
BciVI GTATCC 1 cut(s) 2793
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 1 cut(s) 2534
BcoDI GTCTC 4 cut(s) 293, 788, 3109, 3139
BfaI CTAG 8 cut(s) 1278, 1283, 1442, 1760, 1769, 1877, 2390, 2687
BfrI CTTAAG 1 cut(s) 1798
BfuI GTATCC 1 cut(s) 2793
BglII AGATCT 4 cut(s) 376, 822, 1285, 1444
BisI GCNGC 4 cut(s) 214, 250, 2347, 2835
BlsI GCNGC 4 cut(s) 215, 251, 2348, 2836
BmcAI AGTACT 2 cut(s) 181, 2373
Bme1390I CCNGG 4 cut(s) 196, 744, 2534, 2937
Bme18I GGWCC 6 cut(s) 146, 631, 1022, 1310, 1355, 2698
BmeT110I CYCGRG 1 cut(s) 671
BmiI GGNNCC 6 cut(s) 596, 632, 883, 1222, 1805, 2868
BmrFI CCNGG 4 cut(s) 196, 744, 2534, 2937
BmrI ACTGGG 2 cut(s) 2056, 2215
BmsI GCATC 3 cut(s) 124, 1259, 2333
BmuI ACTGGG 2 cut(s) 2056, 2215
BpiI GAAGAC 2 cut(s) 1329, 2087
BpmI CTGGAG 1 cut(s) 1204
Bpu10I CCTNAGC 2 cut(s) 635, 3084
BpuEI CTTGAG 7 cut(s) 409, 472, 1618, 1660, 1870, 2036, 2698
BpuMI CCSGG 1 cut(s) 2534
BsaBI GATNNNNATC 1 cut(s) 3002
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 8 cut(s) 195, 253, 493, 899, 1393, 2239, 2474, 2845
BsaXI ACNNNNNCTCC 2 cut(s) 1708, 1738
Bsc4I CCNNNNNNNGG 9 cut(s) 322, 627, 743, 905, 1182, 2227, 2497, 2975, 3088
Bse21I CCTNAGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 3002
BseBI CCWGG 3 cut(s) 196, 744, 2937
BseDI CCNNGG 8 cut(s) 195, 253, 493, 899, 1393, 2239, 2474, 2845
BseGI GGATG 5 cut(s) 57, 362, 435, 2288, 2348
BseJI GATNNNNATC 1 cut(s) 3002
BseLI CCNNNNNNNGG 9 cut(s) 322, 627, 743, 905, 1182, 2227, 2497, 2975, 3088
BseMI GCAATG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 2363
BseXI GCAGC 3 cut(s) 225, 261, 2846
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 2 cut(s) 2200, 2673
Bsh1236I CGCG 1 cut(s) 2349
BshFI GGCC 8 cut(s) 492, 597, 663, 1118, 1399, 2190, 2368, 2869
BshNI GGYRCC 1 cut(s) 1803
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 1 cut(s) 2534
BslFI GGGAC 3 cut(s) 661, 2348, 2516
BslI CCNNNNNNNGG 9 cut(s) 322, 627, 743, 905, 1182, 2227, 2497, 2975, 3088
BsmAI GTCTC 4 cut(s) 293, 788, 3109, 3139
BsmBI CGTCTC 1 cut(s) 3139
BsmFI GGGAC 3 cut(s) 661, 2348, 2516
BsmI GAATGC 2 cut(s) 178, 2762
BsnI GGCC 8 cut(s) 492, 597, 663, 1118, 1399, 2190, 2368, 2869
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 1 cut(s) 2363
Bsp1407I TGTACA 1 cut(s) 3127
Bsp19I CCATGG 1 cut(s) 2474
BspACI CCGC 6 cut(s) 326, 366, 795, 2347, 2721, 2808
BspANI GGCC 8 cut(s) 492, 597, 663, 1118, 1399, 2190, 2368, 2869
BspFNI CGCG 1 cut(s) 2349
BspLI GGNNCC 6 cut(s) 596, 632, 883, 1222, 1805, 2868
BspPI GGATC 8 cut(s) 590, 916, 1021, 1215, 1228, 1988, 2310, 2587
BspT107I GGYRCC 1 cut(s) 1803
BspTI CTTAAG 1 cut(s) 1798
BspTNI GGTCTC 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 2721
BsrDI GCAATG 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 3127
BssECI CCNNGG 8 cut(s) 195, 253, 493, 899, 1393, 2239, 2474, 2845
BssNI GRCGYC 1 cut(s) 204
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 7 cut(s) 253, 493, 899, 1393, 2239, 2474, 2845
Bst2BI CACGAG 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 196, 744, 2937
Bst4CI ACNGT 3 cut(s) 775, 1664, 2530
Bst6I CTCTTC 2 cut(s) 296, 918
BstACI GRCGYC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 1798
BstAUI TGTACA 1 cut(s) 3127
BstC8I GCNNGC 3 cut(s) 283, 2088, 2445
BstDSI CCRYGG 1 cut(s) 2474
BstEII GGTNACC 1 cut(s) 2921
BstF5I GGATG 5 cut(s) 57, 362, 435, 2288, 2348
BstFNI CGCG 1 cut(s) 2349
BstHHI GCGC 1 cut(s) 736
BstMAI GTCTC 4 cut(s) 293, 788, 3109, 3139
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 3 cut(s) 196, 744, 2937
BstNSI RCATGY 4 cut(s) 643, 2988, 3067, 3122
BstPI GGTNACC 1 cut(s) 2921
BstSCI CCNGG 4 cut(s) 194, 742, 2532, 2935
BstSLI GKGCMC 1 cut(s) 2363
BstUI CGCG 1 cut(s) 2349
BstV1I GCAGC 3 cut(s) 225, 261, 2846
BstV2I GAAGAC 2 cut(s) 1329, 2087
BstX2I RGATCY 6 cut(s) 376, 822, 908, 1220, 1285, 1444
BstXI CCANNNNNNTGG 4 cut(s) 878, 1307, 1691, 1832
BstYI RGATCY 6 cut(s) 376, 822, 908, 1220, 1285, 1444
Bsu36I CCTNAGG 1 cut(s) 626
BsuI GTATCC 1 cut(s) 2793
BsuRI GGCC 8 cut(s) 492, 597, 663, 1118, 1399, 2190, 2368, 2869
BtgI CCRYGG 1 cut(s) 2474
BtgZI GCGATG 1 cut(s) 2462
BtsCI GGATG 5 cut(s) 57, 362, 435, 2288, 2348
BtsIMutI CAGTG 7 cut(s) 83, 592, 1017, 1180, 1870, 2069, 2176
Cac8I GCNNGC 3 cut(s) 283, 2088, 2445
CfoI GCGC 1 cut(s) 736
CseI GACGC 2 cut(s) 193, 2092
Csp6I GTAC 8 cut(s) 180, 919, 1164, 1660, 1804, 1917, 2372, 3128
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviQI GTAC 8 cut(s) 180, 919, 1164, 1660, 1804, 1917, 2372, 3128
DraI TTTAAA 2 cut(s) 2154, 2235
EaeI YGGCCR 1 cut(s) 2366
Eam1104I CTCTTC 2 cut(s) 296, 918
EarI CTCTTC 2 cut(s) 296, 918
EciI GGCGGA 2 cut(s) 341, 355
Eco130I CCWWGG 7 cut(s) 253, 493, 899, 1393, 2239, 2474, 2845
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 6 cut(s) 146, 631, 1022, 1310, 1355, 2698
Eco57I CTGAAG 2 cut(s) 674, 899
Eco81I CCTNAGG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 2921
EcoO109I RGGNCCY 2 cut(s) 631, 2867
EcoO65I GGTNACC 1 cut(s) 2921
EcoRI GAATTC 2 cut(s) 893, 2132
EcoRII CCWGG 3 cut(s) 194, 742, 2935
EcoT14I CCWWGG 7 cut(s) 253, 493, 899, 1393, 2239, 2474, 2845
ErhI CCWWGG 7 cut(s) 253, 493, 899, 1393, 2239, 2474, 2845
Esp3I CGTCTC 1 cut(s) 3139
FaqI GGGAC 3 cut(s) 661, 2348, 2516
FauI CCCGC 1 cut(s) 788
FauNDI CATATG 1 cut(s) 2122
FbaI TGATCA 1 cut(s) 33
FblI GTMKAC 1 cut(s) 1489
Fnu4HI GCNGC 4 cut(s) 214, 250, 2347, 2835
FokI GGATG 5 cut(s) 44, 349, 422, 2275, 2355
Fsp4HI GCNGC 4 cut(s) 214, 250, 2347, 2835
FspBI CTAG 8 cut(s) 1278, 1283, 1442, 1760, 1769, 1877, 2390, 2687
GlaI GCGC 1 cut(s) 735
GluI GCNGC 4 cut(s) 214, 250, 2347, 2835
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 1204
HaeIII GGCC 8 cut(s) 492, 597, 663, 1118, 1399, 2190, 2368, 2869
HapII CCGG 1 cut(s) 2534
HgaI GACGC 2 cut(s) 193, 2092
HhaI GCGC 1 cut(s) 736
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 2 cut(s) 936, 2212
HindII GTYRAC 2 cut(s) 936, 2212
HindIII AAGCTT 2 cut(s) 686, 2114
HinfI GANTC 9 cut(s) 674, 1717, 1763, 1991, 2009, 2056, 2182, 2690, 2770
HpaII CCGG 1 cut(s) 2534
HphI GGTGA 2 cut(s) 1604, 2895
Hpy166II GTNNAC 7 cut(s) 70, 523, 936, 1017, 1490, 2212, 2982
Hpy8I GTNNAC 7 cut(s) 70, 523, 936, 1017, 1490, 2212, 2982
HpyAV CCTTC 7 cut(s) 159, 846, 1085, 1788, 2498, 2851, 2912
HpyCH4III ACNGT 3 cut(s) 775, 1664, 2530
HpyCH4IV ACGT 3 cut(s) 983, 1429, 3148
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpySE526I ACGT 3 cut(s) 983, 1429, 3148
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 1 cut(s) 734
KpnI GGTACC 1 cut(s) 1807
Ksp22I TGATCA 1 cut(s) 33
LmnI GCTCC 2 cut(s) 111, 1669
Lsp1109I GCAGC 3 cut(s) 225, 261, 2846
LweI GCATC 3 cut(s) 124, 1259, 2333
MaeI CTAG 8 cut(s) 1278, 1283, 1442, 1760, 1769, 1877, 2390, 2687
MaeII ACGT 3 cut(s) 983, 1429, 3148
MbiI CCGCTC 1 cut(s) 2721
MfeI CAATTG 3 cut(s) 646, 1055, 2786
MflI RGATCY 6 cut(s) 376, 822, 908, 1220, 1285, 1444
MhlI GDGCHC 1 cut(s) 2363
MlsI TGGCCA 1 cut(s) 2368
MluNI TGGCCA 1 cut(s) 2368
MlyI GAGTC 4 cut(s) 683, 1726, 1757, 2699
MmeI TCCRAC 3 cut(s) 1845, 1877, 2658
Mox20I TGGCCA 1 cut(s) 2368
MroXI GAANNNNTTC 3 cut(s) 1507, 1895, 2265
MscI TGGCCA 1 cut(s) 2368
MslI CAYNNNNRTG 2 cut(s) 2269, 3123
Msp20I TGGCCA 1 cut(s) 2368
MspA1I CMGCKG 3 cut(s) 266, 2563, 3088
MspCI CTTAAG 1 cut(s) 1798
MspI CCGG 1 cut(s) 2534
MspR9I CCNGG 4 cut(s) 196, 744, 2534, 2937
MunI CAATTG 3 cut(s) 646, 1055, 2786
Mva1269I GAATGC 2 cut(s) 178, 2762
MvaI CCWGG 3 cut(s) 196, 744, 2937
MvnI CGCG 1 cut(s) 2349
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 2534
NcoI CCATGG 1 cut(s) 2474
NdeI CATATG 1 cut(s) 2122
NlaIV GGNNCC 6 cut(s) 596, 632, 883, 1222, 1805, 2868
NmeAIII GCCGAG 1 cut(s) 623
NmuCI GTSAC 3 cut(s) 205, 1592, 3009
NspI RCATGY 4 cut(s) 643, 2988, 3067, 3122
PaeR7I CTCGAG 1 cut(s) 671
PciI ACATGT 2 cut(s) 2984, 3118
PctI GAATGC 2 cut(s) 178, 2762
PdmI GAANNNNTTC 3 cut(s) 1507, 1895, 2265
PfeI GAWTC 5 cut(s) 1991, 2009, 2056, 2182, 2770
PflMI CCANNNNNTGG 3 cut(s) 905, 1182, 2497
PfoI TCCNGGA 2 cut(s) 742, 2935
PkrI GCNGC 4 cut(s) 215, 251, 2348, 2836
PleI GAGTC 4 cut(s) 682, 1725, 1757, 2698
PpsI GAGTC 4 cut(s) 682, 1725, 1757, 2698
PpuMI RGGWCCY 1 cut(s) 631
PscI ACATGT 2 cut(s) 2984, 3118
PshBI ATTAAT 1 cut(s) 864
PsiI TTATAA 1 cut(s) 1080
Psp1406I AACGTT 1 cut(s) 983
Psp5II RGGWCCY 1 cut(s) 631
Psp6I CCWGG 3 cut(s) 194, 742, 2935
PspEI GGTNACC 1 cut(s) 2921
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 3 cut(s) 194, 742, 2935
PspN4I GGNNCC 6 cut(s) 596, 632, 883, 1222, 1805, 2868
PspPPI RGGWCCY 1 cut(s) 631
PsrI GAACNNNNNNTAC 2 cut(s) 1156, 1188
PsuI RGATCY 6 cut(s) 376, 822, 908, 1220, 1285, 1444
PvuII CAGCTG 3 cut(s) 266, 2563, 3088
RsaI GTAC 8 cut(s) 181, 920, 1165, 1661, 1805, 1918, 2373, 3129
RsaNI GTAC 8 cut(s) 180, 919, 1164, 1660, 1804, 1917, 2372, 3128
RseI CAYNNNNRTG 2 cut(s) 2269, 3123
SatI GCNGC 4 cut(s) 214, 250, 2347, 2835
ScaI AGTACT 2 cut(s) 181, 2373
SchI GAGTC 4 cut(s) 683, 1726, 1757, 2699
ScrFI CCNGG 4 cut(s) 196, 744, 2534, 2937
SduI GDGCHC 1 cut(s) 2363
SfaNI GCATC 3 cut(s) 124, 1259, 2333
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 6 cut(s) 146, 631, 1022, 1310, 1355, 2698
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 2 cut(s) 2269, 3123
SmlI CTYRAG 9 cut(s) 388, 451, 671, 1597, 1639, 1798, 1885, 2015, 2677
SmoI CTYRAG 9 cut(s) 388, 451, 671, 1597, 1639, 1798, 1885, 2015, 2677
SsiI CCGC 6 cut(s) 326, 366, 795, 2347, 2721, 2808
SspMI CTAG 8 cut(s) 1278, 1283, 1442, 1760, 1769, 1877, 2390, 2687
StyD4I CCNGG 4 cut(s) 194, 742, 2532, 2935
StyI CCWWGG 7 cut(s) 253, 493, 899, 1393, 2239, 2474, 2845
TaaI ACNGT 3 cut(s) 775, 1664, 2530
TaiI ACGT 3 cut(s) 986, 1432, 3151
TaqI TCGA 6 cut(s) 132, 672, 1913, 1961, 2518, 2705
TaqII GACCGA 2 cut(s) 134, 1039
TatI WGTACW 3 cut(s) 179, 2371, 3127
TauI GCSGC 1 cut(s) 2349
TfiI GAWTC 5 cut(s) 1991, 2009, 2056, 2182, 2770
TscAI CASTG 7 cut(s) 83, 592, 1024, 1187, 1870, 2069, 2176
TseFI GTSAC 3 cut(s) 205, 1592, 3009
TseI GCWGC 3 cut(s) 213, 249, 2834
Tsp45I GTSAC 3 cut(s) 205, 1592, 3009
TspDTI ATGAA 6 cut(s) 17, 290, 1820, 2093, 2145, 2582
TspGWI ACGGA 1 cut(s) 2592
TspRI CASTG 7 cut(s) 83, 592, 1024, 1187, 1870, 2069, 2176
Van91I CCANNNNNTGG 3 cut(s) 905, 1182, 2497
Vha464I CTTAAG 1 cut(s) 1798
VpaK11BI GGWCC 6 cut(s) 146, 631, 1022, 1310, 1355, 2698
VspI ATTAAT 1 cut(s) 864
XbaI TCTAGA 4 cut(s) 1282, 1441, 1768, 1876
XceI RCATGY 4 cut(s) 643, 2988, 3067, 3122
XcmI CCANNNNNNNNNTGG 2 cut(s) 1349, 2933
XhoI CTCGAG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 1489
XmnI GAANNNNTTC 3 cut(s) 1507, 1895, 2265
XspI CTAG 8 cut(s) 1278, 1283, 1442, 1760, 1769, 1877, 2390, 2687
ZrmI AGTACT 2 cut(s) 181, 2373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.