RchiOBHm_Chr3g0462461

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000047
Physical Location & Seq
Reverse (-)
10136689 .. 10139452
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42882

Sequence Viewer

Length: 2280 bp
ATGTCAGTTAGTGATTCTCGATTTGTCGACCTGGTACTTTCCCGCACCGGAAACTCATTGGTCTCGAGCAATATCATCTTCGTTGCCAAAGTTGAGGTATTGAGTGTGTCCACTTGTAATCTTTCAGACCCTATTGATTCTTCTTTACAAAAGCTTCACTCGCTCTCAGTCATTCATCTAGAGAATAATTATTTCTCTTCTCAAGTTCCAGAATTCTTATCAAATTTCTCAAATTTGACTTCCTTGCGTATCAGTTATTCCCGGTTAAATGGTACTTTTCCTGAGGCCATCTTCCTGGTACCTACACCGGAGACCATTGACTTATCAAATAATGAACAGCTGCAGGGTTCTTTACCAGAATTCAAGAAGACCGGATCTCTTCGGTCCCTAGTTCTAAGCAGAACAAATTTTTCAGGATTGTTGCCTGATTCCATTGGCGAGCTCAAAATGCTGTCAAGAATAGATCTTTCATTCTGCAATTTCACAGGAGGAATTCCAAGTTCAATGGAAAACCTAACAGAATTAGTTTACTTGGATATGTCAAATAACAGGTTAAATGGCTCAGTTCCGTTGTTCAACAAGGGAAAGAATGTGGAGGAAATAATTCTCTCTCACAATGATCTATCAGTCCTCCTTTCCCAATATTACATTATTACCACATTGGCTTTGGCTTCATGCAAGTTGAGAAAATTCCCTGATTTCTTGAGATACCAGTCCATATTAACGTATTTGGACCTTTCACAGAACCAGATTCATGGGGAGATACCCAACTGGATTTGGAGGCTCAGTAATCTTGTTCAGCTCAATCTTTCTTTTAACGCCCTGGTAACTCTAGAAGGTCCTTCACTTCATGCCAGTTCTACTTTCAGTATTCTGTCTGTGATTGACCTTCATTCTAACCAGCTTCAAGGACAAATCCCAATTTTACCACCGTCTGCCGCTTATCTGGATTACTCAAGGAACAATTTCAGCTCTACCATACCCTCTGACATTGGTAATTCCCTTAATTTCACTACTTTCTTCTCTCTTTCAAGCAATAACTTCCATGGCATCATACCGGGGTCAATATGCAATGCATCAAATCTTCAAGTTCTTGATTTGTCCAATAATTCTTTGTGTGGCAAAATTCCCAAATGCTTATCTGCAATGGTAAGCGGTCTTGCAGTACTCAATCTAAGGAGAAACAACCTTGTTGGCAGCATTTCTGATAACTTTCCTGGAAATTGTAGTTTGGAAACTCTAGACCTCAATGGAAATCGGCTAGAAGGCAAGTTTCCAAAATCTCTAGCCCAGTGCGCCAAGTTAGAGGTTTTGAACCTTGGGAACAATCAGATGACAGATTCATTTCCCTACTTGTTGAGAAACATATCCTCCTTGCGTGTTCTTATTCTGCGGTCCAACAATTATTTTGGGAGATTTGATTGTCACAAGACTAATGGCACCTGGCCAATGCTTCAAATTATTGATCTTGCTAACAACAGTTTTACTGGAGATATTCCAGGAAATTGTTTGACAACATGGCGCGCAATGATGGTTGATGGAGATGCTTCACCATCAGTTCTGAACCAAGCTAAATTCCGGGTGTTTCAGTTCAGTGAGCTGTATTATCGGGATGCATTAACTATCACCAGCAAAGGTCTAGAGGTGGAGTTGGTAAAGATTCTCAATATCTATACATCAGTTGACTTTTCTTGCAACAAATTCAGTGGATCGATACCTAAGGAAATGGGAGGACTCATATCACTCTATGCTCTCAACTTGTCCAGTAATACTCTCACTGGTGAAATTCCATCATCATTGGCTAACTTGAAACAGCTCGAGTCCTTGGACCTCTCAAAGAACAACCTAAGTGGGCAAATTCCGGAAGAGTTTGCAAAACTTAACTTCCTTTCATCCGTGAATCTCTCTTATAATCAACTTGTTGGATTGATCCCAACCAGTACTCAGTTTTCAACACTTCCAGCATCTTCATTTGAAGGTAATAAAGGTTTATGGGGGCCTCCATTGACAGGAGATAACAGAACTGGGATGCCACTGCCAACAAATAACGGAAGTCATTCACATGTTAGACAAGAGATTGATTGGGATTTTGTTAGTGCTGAAATTGGATTTGTATCTGGCTTTGGAATTGCCATCGGGTCACTTTTGTTCTGCAAGAAATGGAGGAAATGGTATTACAGAGCTATGTATAGCATACTTGTTAAGATATTTCCTCAGCTGGAACAAAGATTGGGTAATCACAGAAGACATGTTTACATCAATCCGAGGTGGAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

759

Amino Acids

84.23

Weight (kDa)

7.54

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 113 - 184 9.1e-06 Leucine-rich repeat region
LRR_8 PF13855 219 - 275 3.9e-07 Leucine rich repeat
LRR_8 PF13855 386 - 444 2.2e-08 Leucine rich repeat
LRR_8 PF13855 410 - 468 3e-08 Leucine rich repeat
LRR_8 PF13855 581 - 640 4.5e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1911
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 2 cut(s) 298, 1439
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 1524
AccIII TCCGGA 1 cut(s) 1861
AciI CCGC 4 cut(s) 43, 939, 1155, 1393
AclWI GGATC 3 cut(s) 382, 1717, 1924
AcoI YGGCCR 1 cut(s) 1445
AfaI GTAC 5 cut(s) 36, 274, 300, 1167, 1942
AfiI CCNNNNNNNGG 1 cut(s) 2009
AflIII ACRYGT 2 cut(s) 2062, 2248
AjnI CCWGG 6 cut(s) 30, 294, 822, 1216, 1442, 1498
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 2 cut(s) 67, 305
AlwI GGATC 3 cut(s) 382, 1717, 1924
Ama87I CYCGRG 2 cut(s) 64, 1817
Aor13HI TCCGGA 1 cut(s) 1861
AoxI GGCC 3 cut(s) 285, 1445, 1997
ApeKI GCWGC 2 cut(s) 340, 1197
Asp700I GAANNNNTTC 3 cut(s) 603, 965, 2056
Asp718I GGTACC 1 cut(s) 298
AspLEI GCGC 3 cut(s) 1298, 1524, 1526
AspS9I GGNCC 6 cut(s) 384, 733, 839, 1395, 1828, 1997
AsuC2I CCSGG 3 cut(s) 262, 1059, 1580
AsuHPI GGTGA 3 cut(s) 1542, 1618, 1793
AvaI CYCGRG 2 cut(s) 64, 1817
AvaII GGWCC 5 cut(s) 384, 733, 839, 1395, 1828
AxyI CCTNAGG 2 cut(s) 282, 1719
BalI TGGCCA 1 cut(s) 1447
BanI GGYRCC 2 cut(s) 298, 1439
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 374, 2251
Bbv12I GWGCWC 1 cut(s) 444
BbvCI CCTCAGC 1 cut(s) 2214
BbvI GCAGC 2 cut(s) 327, 1209
BccI CCATC 6 cut(s) 296, 1525, 1532, 1561, 1798, 2141
BciT130I CCWGG 6 cut(s) 32, 296, 824, 1218, 1444, 1500
BcnI CCSGG 3 cut(s) 262, 1059, 1580
BcoDI GTCTC 2 cut(s) 67, 305
BfaI CTAG 7 cut(s) 179, 389, 833, 1241, 1262, 1286, 1640
BfmI CTRYAG 1 cut(s) 341
BglII AGATCT 1 cut(s) 463
BisI GCNGC 3 cut(s) 341, 939, 1198
BlsI GCNGC 3 cut(s) 342, 940, 1199
BmcAI AGTACT 2 cut(s) 1167, 1942
Bme1390I CCNGG 9 cut(s) 32, 262, 296, 824, 1059, 1218, 1444, 1500, 1580
Bme18I GGWCC 5 cut(s) 384, 733, 839, 1395, 1828
BmeT110I CYCGRG 2 cut(s) 64, 1817
BmgT120I GGNCC 6 cut(s) 384, 733, 839, 1395, 1828, 1997
BmiI GGNNCC 4 cut(s) 300, 386, 1441, 1998
BmrFI CCNGG 9 cut(s) 32, 262, 296, 824, 1059, 1218, 1444, 1500, 1580
BmrI ACTGGG 2 cut(s) 1285, 2034
BmsI GCATC 6 cut(s) 1059, 1085, 1534, 1603, 1973, 2019
BmuI ACTGGG 2 cut(s) 1285, 2034
BpiI GAAGAC 2 cut(s) 374, 2251
BpmI CTGGAG 1 cut(s) 1509
Bpu10I CCTNAGC 1 cut(s) 2214
BpuEI CTTGAG 3 cut(s) 186, 724, 940
BpuMI CCSGG 3 cut(s) 262, 1059, 1580
Bsa29I ATCGAT 1 cut(s) 1712
BsaBI GATNNNNATC 1 cut(s) 2113
BsaI GGTCTC 2 cut(s) 67, 305
BsaJI CCNNGG 6 cut(s) 822, 1045, 1058, 1318, 1824, 2264
BsaWI WCCGGW 4 cut(s) 47, 307, 371, 1861
BsaXI ACNNNNNCTCC 4 cut(s) 772, 802, 1355, 1385
Bsc4I CCNNNNNNNGG 1 cut(s) 2009
Bse1I ACTGG 9 cut(s) 712, 776, 855, 1291, 1492, 1764, 1783, 1938, 2029
Bse21I CCTNAGG 2 cut(s) 282, 1719
Bse3DI GCAATG 3 cut(s) 1078, 1152, 1533
Bse8I GATNNNNATC 1 cut(s) 2113
BseAI TCCGGA 1 cut(s) 1861
BseBI CCWGG 6 cut(s) 32, 296, 824, 1218, 1444, 1500
BseCI ATCGAT 1 cut(s) 1712
BseDI CCNNGG 6 cut(s) 822, 1045, 1058, 1318, 1824, 2264
BseGI GGATG 3 cut(s) 1618, 1892, 2034
BseJI GATNNNNATC 1 cut(s) 2113
BseLI CCNNNNNNNGG 1 cut(s) 2009
BseMI GCAATG 3 cut(s) 1078, 1152, 1533
BseMII CTCAG 6 cut(s) 180, 273, 576, 799, 1958, 2228
BseNI ACTGG 9 cut(s) 712, 776, 855, 1291, 1492, 1764, 1783, 1938, 2029
BsePI GCGCGC 1 cut(s) 1522
BseXI GCAGC 2 cut(s) 327, 1209
Bsh1236I CGCG 1 cut(s) 1524
BshFI GGCC 3 cut(s) 287, 1447, 1999
BshNI GGYRCC 2 cut(s) 298, 1439
BshVI ATCGAT 1 cut(s) 1712
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 2 cut(s) 64, 1817
BsiSI CCGG 7 cut(s) 48, 262, 308, 372, 1058, 1579, 1862
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 2009
BsmAI GTCTC 2 cut(s) 67, 305
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 3 cut(s) 287, 1447, 1999
Bso31I GGTCTC 2 cut(s) 67, 305
BsoBI CYCGRG 2 cut(s) 64, 1817
Bsp1286I GDGCHC 1 cut(s) 444
Bsp13I TCCGGA 1 cut(s) 1861
Bsp143I GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 4 cut(s) 43, 939, 1155, 1393
BspANI GGCC 3 cut(s) 287, 1447, 1999
BspCNI CTCAG 6 cut(s) 179, 274, 575, 798, 1957, 2227
BspDI ATCGAT 1 cut(s) 1712
BspEI TCCGGA 1 cut(s) 1861
BspFNI CGCG 1 cut(s) 1524
BspLI GGNNCC 4 cut(s) 300, 386, 1441, 1998
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 3 cut(s) 382, 1717, 1924
BspT107I GGYRCC 2 cut(s) 298, 1439
BspTNI GGTCTC 2 cut(s) 67, 305
BsrDI GCAATG 3 cut(s) 1078, 1152, 1533
BsrI ACTGG 9 cut(s) 712, 776, 855, 1291, 1492, 1764, 1783, 1938, 2029
BssECI CCNNGG 6 cut(s) 822, 1045, 1058, 1318, 1824, 2264
BssHII GCGCGC 1 cut(s) 1522
BssMI GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
BssT1I CCWWGG 3 cut(s) 1045, 1318, 1824
Bst2UI CCWGG 6 cut(s) 32, 296, 824, 1218, 1444, 1500
Bst4CI ACNGT 2 cut(s) 933, 1481
Bst6I CTCTTC 3 cut(s) 202, 384, 1860
BstC8I GCNNGC 2 cut(s) 440, 1524
BstDSI CCRYGG 1 cut(s) 1045
BstF5I GGATG 3 cut(s) 1618, 1892, 2034
BstFNI CGCG 1 cut(s) 1524
BstHHI GCGC 3 cut(s) 1298, 1524, 1526
BstKTI GATC 6 cut(s) 377, 466, 622, 1468, 1712, 1932
BstMAI GTCTC 2 cut(s) 67, 305
BstMBI GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
BstMWI GCNNNNNNNGC 3 cut(s) 160, 448, 1295
BstNI CCWGG 6 cut(s) 32, 296, 824, 1218, 1444, 1500
BstNSI RCATGY 2 cut(s) 2066, 2252
BstSCI CCNGG 9 cut(s) 30, 260, 294, 822, 1057, 1216, 1442, 1498, 1578
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 1 cut(s) 1524
BstV1I GCAGC 2 cut(s) 327, 1209
BstV2I GAAGAC 2 cut(s) 374, 2251
BstX2I RGATCY 2 cut(s) 374, 463
BstXI CCANNNNNNTGG 2 cut(s) 295, 755
BstYI RGATCY 2 cut(s) 374, 463
Bsu15I ATCGAT 1 cut(s) 1712
Bsu36I CCTNAGG 2 cut(s) 282, 1719
BsuRI GGCC 3 cut(s) 287, 1447, 1999
BsuTUI ATCGAT 1 cut(s) 1712
BtgI CCRYGG 1 cut(s) 1045
BtsCI GGATG 3 cut(s) 1618, 1892, 2034
BtsI GCAGTG 1 cut(s) 2033
BtsIMutI CAGTG 5 cut(s) 1298, 1600, 1711, 1776, 2033
Cac8I GCNNGC 2 cut(s) 440, 1524
CfoI GCGC 3 cut(s) 1298, 1524, 1526
Cfr13I GGNCC 6 cut(s) 384, 733, 839, 1395, 1828, 1997
ClaI ATCGAT 1 cut(s) 1712
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 5 cut(s) 35, 273, 299, 1166, 1941
CspCI CAANNNNNGTGG 4 cut(s) 1687, 1722, 1831, 1866
CviAII CATG 7 cut(s) 675, 755, 851, 1046, 1518, 2063, 2249
CviQI GTAC 5 cut(s) 35, 273, 299, 1166, 1941
DpnI GATC 6 cut(s) 376, 465, 621, 1467, 1711, 1931
DpnII GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
EaeI YGGCCR 1 cut(s) 1445
Eam1104I CTCTTC 3 cut(s) 202, 384, 1860
EarI CTCTTC 3 cut(s) 202, 384, 1860
Ecl136II GAGCTC 1 cut(s) 442
Eco130I CCWWGG 3 cut(s) 1045, 1318, 1824
Eco24I GRGCYC 1 cut(s) 444
Eco31I GGTCTC 2 cut(s) 67, 305
Eco47I GGWCC 5 cut(s) 384, 733, 839, 1395, 1828
Eco53kI GAGCTC 1 cut(s) 442
Eco81I CCTNAGG 2 cut(s) 282, 1719
Eco88I CYCGRG 2 cut(s) 64, 1817
EcoICRI GAGCTC 1 cut(s) 442
EcoO109I RGGNCCY 2 cut(s) 839, 1997
EcoRI GAATTC 3 cut(s) 212, 359, 492
EcoRII CCWGG 6 cut(s) 30, 294, 822, 1216, 1442, 1498
EcoT14I CCWWGG 3 cut(s) 1045, 1318, 1824
EcoT22I ATGCAT 2 cut(s) 1078, 1618
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 3 cut(s) 1045, 1318, 1824
FaeI CATG 7 cut(s) 678, 758, 854, 1049, 1521, 2066, 2252
FaqI GGGAC 1 cut(s) 370
FatI CATG 7 cut(s) 674, 754, 850, 1045, 1517, 2062, 2248
FauI CCCGC 1 cut(s) 50
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 341, 939, 1198
FokI GGATG 3 cut(s) 1625, 1879, 2041
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 3 cut(s) 341, 939, 1198
FspBI CTAG 7 cut(s) 179, 389, 833, 1241, 1262, 1286, 1640
GlaI GCGC 3 cut(s) 1297, 1523, 1525
GluI GCNGC 3 cut(s) 341, 939, 1198
GsuI CTGGAG 1 cut(s) 1509
HaeIII GGCC 3 cut(s) 287, 1447, 1999
HapII CCGG 7 cut(s) 48, 262, 308, 372, 1058, 1579, 1862
HhaI GCGC 3 cut(s) 1298, 1524, 1526
Hin1II CATG 7 cut(s) 678, 758, 854, 1049, 1521, 2066, 2252
Hin6I GCGC 3 cut(s) 1296, 1522, 1524
HinP1I GCGC 3 cut(s) 1296, 1522, 1524
HincII GTYRAC 2 cut(s) 28, 1684
HindII GTYRAC 2 cut(s) 28, 1684
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 9 cut(s) 14, 137, 428, 751, 1340, 1660, 1734, 1820, 1900
HpaII CCGG 7 cut(s) 48, 262, 308, 372, 1058, 1579, 1862
HphI GGTGA 3 cut(s) 1542, 1618, 1793
Hpy166II GTNNAC 5 cut(s) 28, 111, 529, 1684, 2254
Hpy188I TCNGA 6 cut(s) 127, 988, 1207, 1332, 1563, 2265
Hpy8I GTNNAC 5 cut(s) 28, 111, 529, 1684, 2254
HpyAV CCTTC 5 cut(s) 830, 852, 899, 1259, 1970
HpyCH4III ACNGT 2 cut(s) 933, 1481
HpyCH4IV ACGT 1 cut(s) 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 448, 1295
HpySE526I ACGT 1 cut(s) 725
Hsp92II CATG 7 cut(s) 678, 758, 854, 1049, 1521, 2066, 2252
HspAI GCGC 3 cut(s) 1296, 1522, 1524
Kpn2I TCCGGA 1 cut(s) 1861
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
Lsp1109I GCAGC 2 cut(s) 327, 1209
LweI GCATC 6 cut(s) 1059, 1085, 1534, 1603, 1973, 2019
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 7 cut(s) 179, 389, 833, 1241, 1262, 1286, 1640
MaeII ACGT 1 cut(s) 725
MaeIII GTNAC 3 cut(s) 826, 1424, 2139
MalI GATC 6 cut(s) 376, 465, 621, 1467, 1711, 1931
MboI GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
MflI RGATCY 2 cut(s) 374, 463
MhlI GDGCHC 1 cut(s) 444
MlsI TGGCCA 1 cut(s) 1447
MluNI TGGCCA 1 cut(s) 1447
MlyI GAGTC 2 cut(s) 1728, 1829
MmeI TCCRAC 2 cut(s) 1422, 1903
Mox20I TGGCCA 1 cut(s) 1447
Mph1103I ATGCAT 2 cut(s) 1078, 1618
MroI TCCGGA 1 cut(s) 1861
MroXI GAANNNNTTC 3 cut(s) 603, 965, 2056
MscI TGGCCA 1 cut(s) 1447
MseI TTAA 8 cut(s) 266, 554, 722, 816, 1005, 1619, 1881, 2202
MslI CAYNNNNRTG 1 cut(s) 2061
Msp20I TGGCCA 1 cut(s) 1447
MspA1I CMGCKG 2 cut(s) 340, 2218
MspI CCGG 7 cut(s) 48, 262, 308, 372, 1058, 1579, 1862
MspR9I CCNGG 9 cut(s) 32, 262, 296, 824, 1059, 1218, 1444, 1500, 1580
MvaI CCWGG 6 cut(s) 32, 296, 824, 1218, 1444, 1500
MvnI CGCG 1 cut(s) 1524
MwoI GCNNNNNNNGC 3 cut(s) 160, 448, 1295
NciI CCSGG 3 cut(s) 262, 1059, 1580
NcoI CCATGG 1 cut(s) 1045
NdeII GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
NlaIII CATG 7 cut(s) 678, 758, 854, 1049, 1521, 2066, 2252
NlaIV GGNNCC 4 cut(s) 300, 386, 1441, 1998
NmuCI GTSAC 2 cut(s) 1424, 2139
NsiI ATGCAT 2 cut(s) 1078, 1618
NspI RCATGY 2 cut(s) 2066, 2252
PaeR7I CTCGAG 2 cut(s) 64, 1817
PauI GCGCGC 1 cut(s) 1522
PciI ACATGT 2 cut(s) 2062, 2248
PdmI GAANNNNTTC 3 cut(s) 603, 965, 2056
PfeI GAWTC 7 cut(s) 14, 137, 428, 751, 1340, 1660, 1900
PfoI TCCNGGA 2 cut(s) 1216, 1498
PkrI GCNGC 3 cut(s) 342, 940, 1199
PleI GAGTC 2 cut(s) 1728, 1828
PpsI GAGTC 2 cut(s) 1728, 1828
PpuMI RGGWCCY 1 cut(s) 839
PscI ACATGT 2 cut(s) 2062, 2248
PsiI TTATAA 1 cut(s) 1911
Psp124BI GAGCTC 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 6 cut(s) 30, 294, 822, 1216, 1442, 1498
PspGI CCWGG 6 cut(s) 30, 294, 822, 1216, 1442, 1498
PspN4I GGNNCC 4 cut(s) 300, 386, 1441, 1998
PspPI GGNCC 6 cut(s) 384, 733, 839, 1395, 1828, 1997
PspPPI RGGWCCY 1 cut(s) 839
PspXI VCTCGAGB 1 cut(s) 1817
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 2 cut(s) 374, 463
PteI GCGCGC 1 cut(s) 1522
PvuII CAGCTG 2 cut(s) 340, 2218
RsaI GTAC 5 cut(s) 36, 274, 300, 1167, 1942
RsaNI GTAC 5 cut(s) 35, 273, 299, 1166, 1941
RseI CAYNNNNRTG 1 cut(s) 2061
SacI GAGCTC 1 cut(s) 444
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 8 cut(s) 266, 554, 722, 816, 1005, 1619, 1881, 2202
SatI GCNGC 3 cut(s) 341, 939, 1198
Sau3AI GATC 6 cut(s) 374, 463, 619, 1465, 1709, 1929
Sau96I GGNCC 6 cut(s) 384, 733, 839, 1395, 1828, 1997
ScaI AGTACT 2 cut(s) 1167, 1942
SchI GAGTC 2 cut(s) 1728, 1829
ScrFI CCNGG 9 cut(s) 32, 262, 296, 824, 1059, 1218, 1444, 1500, 1580
SduI GDGCHC 1 cut(s) 444
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 6 cut(s) 1059, 1085, 1534, 1603, 1973, 2019
SfcI CTRYAG 1 cut(s) 341
Sfr274I CTCGAG 2 cut(s) 64, 1817
SinI GGWCC 5 cut(s) 384, 733, 839, 1395, 1828
SlaI CTCGAG 2 cut(s) 64, 1817
SmiMI CAYNNNNRTG 1 cut(s) 2061
SmlI CTYRAG 5 cut(s) 64, 201, 703, 955, 1817
SmoI CTYRAG 5 cut(s) 64, 201, 703, 955, 1817
SsiI CCGC 4 cut(s) 43, 939, 1155, 1393
SspI AATATT 1 cut(s) 644
SspMI CTAG 7 cut(s) 179, 389, 833, 1241, 1262, 1286, 1640
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 9 cut(s) 30, 260, 294, 822, 1057, 1216, 1442, 1498, 1578
StyI CCWWGG 3 cut(s) 1045, 1318, 1824
TaaI ACNGT 2 cut(s) 933, 1481
TaiI ACGT 1 cut(s) 728
TaqI TCGA 5 cut(s) 19, 27, 65, 1712, 1818
TaqII GACCGA 1 cut(s) 372
TatI WGTACW 2 cut(s) 1165, 1940
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 7 cut(s) 14, 137, 428, 751, 1340, 1660, 1900
Tru1I TTAA 8 cut(s) 266, 554, 722, 816, 1005, 1619, 1881, 2202
Tru9I TTAA 8 cut(s) 266, 554, 722, 816, 1005, 1619, 1881, 2202
TscAI CASTG 5 cut(s) 1298, 1600, 1711, 1783, 2040
TseFI GTSAC 2 cut(s) 1424, 2139
TseI GCWGC 2 cut(s) 340, 1197
Tsp45I GTSAC 2 cut(s) 1424, 2139
TspGWI ACGGA 3 cut(s) 558, 1885, 2064
TspRI CASTG 5 cut(s) 1298, 1600, 1711, 1783, 2040
VpaK11BI GGWCC 5 cut(s) 384, 733, 839, 1395, 1828
XbaI TCTAGA 4 cut(s) 178, 832, 1240, 1639
XceI RCATGY 2 cut(s) 2066, 2252
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XhoI CTCGAG 2 cut(s) 64, 1817
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 3 cut(s) 603, 965, 2056
XspI CTAG 7 cut(s) 179, 389, 833, 1241, 1262, 1286, 1640
ZrmI AGTACT 2 cut(s) 1167, 1942
Zsp2I ATGCAT 2 cut(s) 1078, 1618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.