Rh3DG120400

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000047
Physical Location & Seq
Reverse (-)
10168528 .. 10174251
5724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG120400.1

Sequence Viewer

Length: 3399 bp
ATGAGAATTCCATTGCTTCCATGGTTTTTCTTGATACCCTTTTCCTATTTTGCACTGTTCCGTACACTTGTGGTCTCTGGCCAATGTGACAGCAACCAGCAACAATCTTTGTTGCGCCAACTGAAGAACAGCCTGAATTTTGAGCCTGCACTATCCACAAAGCTTGTGAAGTGGAACAATGTCTCTGATTATTGTTCTTGGGAAGGTGTCTCCTGCAAAGGAGGTTGTGTTACCCATCTCGACTTGAGCAGCGAATCGATTTCAGGTGGACTTGATGATTCCAGTGTTCTTTTCAGTCTGCAGTACATCGAACGCCTGAATTTGGCGTATAATAACTTCAATCATACTCAAATTCCATCCCAGTTCAACAAGCTAGCCAGTTTGAATTATTTGAATCTGTCAAATGCTGGCTTTTCCGGGCAGATTCCCGTTGAGATTTCGCAGTTGACAAGGTTGGTGTTTCTTGATTTATCTACCTTCTACTTTCCAGGAACTCCTGCACTGCAACTTGAGCATCCAGATTTGAATTTGCTTATTGGAAACCTTTCGGAGATAATCGAACTTCATCTCGATGGTGTGAACATAGCAGCACAGGGAGCTCAGTGGGGTCAAGCAATATCATCTTCACTGCCAAACCTGAGGGTTTTGAGCTTGTCCAGTTGCAATCTTTCAGGCCCAATTGATACTTCTTTACTGAAGCTTCAATCCCTCTCAGAAATTCGCATAGAGAAAAACAATTTGTCTACTTCAGTTCCACAGTTCTTGTCAAATTTCACAAATTTGACTTCCTTACGCCTCATGAATTCAGGGTTATATGGTACATTCCCAAAGGAGATCTTCCGGGTACCTACACTGCAGATTATCGACTTGATTGGCAATGAAGAGCTACAAGGTTCGCTGCCAGACTTTCCAAAGAATGGGGCTCTTCAATCCCTGTTCCTAGCCAGAACAAATTTTTCAGGGTTATTGCCGGAAACTGTTGGAAACCTCAAGATGTTGTCCAAAGTTGATATTTCCTATTGCAATTTCACTGGACCGATCCCAAAGTCAATAGCAAGCCTTACAGAACTGGTTTATGTGGACATGTCAAATAACAGGTTTAATGGTTCAGTTCCACTGTTGAGTATGGCCAAGAATCTGACCAACATAAATCTTTCGTACAATGAGCTAACAGGTCAGATTAACTCTACTCGCTGGGAAAACCTTACGAATCTGGTGAATCTGGACTTGCGTTTCAATCAACTGAATGGAAGTATTCCAGTGTCCCTGTTTTCCCTTCCCTTGTTGCAGAAACTAGTACTCTCCAACAATCAATTCTCTGGTCAGTTACATGAATTTGCCAATATCTCTTCACTGGACACCGTTGATTTGAGTAGCAACAATTTGGAAGGAACGGTACCCAAGTCTATCATTAATCTCCGAGGGCTTAAAATTCTCTCACTTTCTTCCAACAACTTCGGTGGCTCCTTCCCTCTTAACAGTATTCAACAGCTCAAAAATCTCTCCAGTCTTGATCTTTCATACAATAGTTTGTCGATTAGTTATTATAGTACAAATTCCTCACAGTCCTCCTTTCCTAATATTACCACACTGAAGTTGGCTTCTGGGCAGTTGAGAACATTCCCTGATTTCTTGAGGAATCAATCCAAACTGAGCTATTTGGACCTTTCACTGAACCAGATTCATGGAGAGATACCCAACTGGATTTGGAGGCTCAGTAATCTTCTTCAACTAAATCTGTCTTGCAACTCCCTGGTAACTCTAGAAGGTCCTTTTCTCAACCTCACTTCTACGTTGTCTATGGTTGACCTTCACTCCAACCAGCTTCAGGGTCGCAGTCCAATATTTCCACCACTTGCCACTTATCTGGATTACTCGAGAAACAGTTTCACCTCTAGCATACCGGCTGACATTGGTGATTTCCTTACTTACACTCTTTTCTTGTCTCTTTCAAGCAACAAATTTCAAGGGAGCATTCCAGGATCAATATGCAATGCGTCATATCTTCAGGTTCTTGATCTGTCCAATAATTCTTTGGGTGGCTCCATTCCCACATGCTTGACTGCAATAGGCAGAACTCTTGTAGTACTCAATTTAAGGAGAAATAAACTTGCTGGCACAATTCCTGATAGCTTTCCTGGCAATTGTACTTTGAAAACTCTAGACTTCAATCGAAATCATCTAGAAGGTCAGTTTCCAAAATCTCTGGCCAATTGCACAGTGTTAGAAGTTTTGAACCTTGGAAACAATCAGATAATGGATACATATCCTTTCTTGTTGAAGAACATATCCACCTTGCGAGTCCTTGTTTTGCGATCAAACAAATTTTATGGACGCATTGGATGTTCCAACAACACTGGTACCTGGCGAAGGCTTCAAATTGCTGACATAGCACACAACAACTTTAGTGGTGAAATACAAGAAGGATGCTTGACTACATGGCAGGCAATGATGGGCAACGAAGATGCTCAATCATCAATCGATCATCTGCAATTTCCTGTCTTTAGATTCAATGACGAGCTAAATTATCAGGATGCTATAACAGTTACCACCAAAGGACTAGAGATGGAGTTGGTCAAGATTCTAACTGTGTTCACCTCTATTGACATCTCGTGCAACAATTTCAGTGGATCAATACCAGCACAAGTGGGACAACTGAAAGCACTATATGGCCTCAACTTGTCCCATAATGCTTTCACAGGCTCTATCCCATCATCATTGGGTAACCTAACACAACTTGAGTCCTTGGACCTTTCGACCAACAGCCTGAGCGGGCCAATTCCACCACAGCTTAAAGTGCTCACTTTCCTGTCATTCCTGAATGTCTCAAATAATCAACTGGTCGGGATGATCCCAGTCAGTACCCAGTTTTCAACATTTCCAACAACTTCCTTTGCAGGTAATAAGGGATTATGCGGGTCACCTTTACCGCTAAACTGCAGCAGTACCAGCGACTCACCAGGTGCAGCATCAAATGAAAAAGAGTCAGAAATTGGGTTTGATTGGCAGTCCATTTATACTGGACTGGGGTTTGGAGTGGGAGCAGGAGTGGTTGTTATTCTCTTAATGTTGTGGGAGGAAGGAAGAAATTGGATGGACGACAGCATTGATAAAATTCTTCTGGTACTTCTTCCAATGATGGGATTCACTTACAAAACTCATCATGAATGGGATGATGATGGGGAAGACGATTATGAAGAAGATAGCATGTATTTCACAGGAGACTATGATCAAGATGAGATTGAATCAGAAGACAGAGGAATTCAGGGTCCATTTTGTGTGTTTTGTTCGAAACTGGATATCAGTAGGAAGAGTCCCATCCATAACCCAAATTGTACATGCCATTTGTCACCACCTATCTCATCTACTTCTTCCTCCTCGTCCTCGTTCTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1132

Amino Acids

124.63

Weight (kDa)

5.1

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 72 3e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 451 - 511 3.3e-07 Leucine rich repeat
LRR_8 PF13855 692 - 752 9.7e-08 Leucine rich repeat
LRR_8 PF13855 866 - 923 7.4e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2888
Acc65I GGTACC 3 cut(s) 844, 1396, 2360
AccB1I GGYRCC 3 cut(s) 844, 1396, 2360
AccB7I CCANNNNNTGG 1 cut(s) 917
AccBSI CCGCTC 1 cut(s) 2772
AccI GTMKAC 1 cut(s) 743
AciI CCGC 3 cut(s) 2772, 2916, 2930
AclWI GGATC 4 cut(s) 1033, 1990, 2638, 2845
AcoI YGGCCR 3 cut(s) 79, 1128, 2208
AcuI CTGAAG 6 cut(s) 143, 716, 732, 1613, 1811, 1991
AdeI CACNNNGTG 1 cut(s) 2963
AfiI CCNNNNNNNGG 5 cut(s) 322, 917, 1828, 2370, 3140
AflIII ACRYGT 1 cut(s) 1083
AhlI ACTAGT 1 cut(s) 1294
AjnI CCWGG 6 cut(s) 487, 1752, 1978, 2137, 2363, 2959
AjuI GAANNNNNNNTTGG 4 cut(s) 670, 702, 1298, 1330
Alw21I GWGCWC 2 cut(s) 601, 2802
Alw26I GTCTC 6 cut(s) 79, 187, 214, 1950, 2830, 3216
AlwI GGATC 4 cut(s) 1033, 1990, 2638, 2845
Ama87I CYCGRG 1 cut(s) 1876
AoxI GGCC 6 cut(s) 79, 673, 1128, 2208, 2671, 2774
ApeKI GCWGC 5 cut(s) 249, 587, 898, 2940, 2966
AseI ATTAAT 1 cut(s) 1413
Asp700I GAANNNNTTC 1 cut(s) 544
Asp718I GGTACC 3 cut(s) 844, 1396, 2360
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 7 cut(s) 674, 1034, 1663, 1769, 2749, 2774, 3269
AsuC2I CCSGG 2 cut(s) 418, 842
AsuHPI GGTGA 8 cut(s) 1228, 1882, 1928, 2423, 2587, 2913, 2949, 3342
AsuII TTCGAA 1 cut(s) 3290
AsuNHI GCTAGC 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 1876
AvaII GGWCC 5 cut(s) 1034, 1663, 1769, 2749, 3269
AxyI CCTNAGG 1 cut(s) 638
BaeI ACNNNNGTAYC 4 cut(s) 1388, 1421, 2344, 2377
BalI TGGCCA 3 cut(s) 81, 1130, 2210
BanI GGYRCC 3 cut(s) 844, 1396, 2360
BanII GRGCYC 2 cut(s) 601, 925
BarI GAAGNNNNNNTAC 4 cut(s) 320, 352, 1380, 1412
BauI CACGAG 1 cut(s) 2611
BbsI GAAGAC 2 cut(s) 3192, 3258
Bbv12I GWGCWC 2 cut(s) 601, 2802
BbvI GCAGC 5 cut(s) 261, 599, 885, 2952, 2978
BciT130I CCWGG 6 cut(s) 489, 1754, 1980, 2139, 2365, 2961
BciVI GTATCC 1 cut(s) 2254
BclI TGATCA 1 cut(s) 3229
BcnI CCSGG 2 cut(s) 418, 842
BcoDI GTCTC 6 cut(s) 79, 187, 214, 1950, 2830, 3216
BcuI ACTAGT 1 cut(s) 1294
BfaI CTAG 8 cut(s) 374, 941, 1295, 1763, 1896, 2162, 2183, 2561
BfmI CTRYAG 3 cut(s) 299, 854, 2938
BfuAI ACCTGC 1 cut(s) 2888
BfuI GTATCC 1 cut(s) 2254
BglII AGATCT 1 cut(s) 834
BisI GCNGC 5 cut(s) 250, 588, 899, 2941, 2967
BlsI GCNGC 5 cut(s) 251, 589, 900, 2942, 2968
BmcAI AGTACT 2 cut(s) 1299, 2088
Bme1390I CCNGG 8 cut(s) 418, 489, 842, 1754, 1980, 2139, 2365, 2961
Bme18I GGWCC 5 cut(s) 1034, 1663, 1769, 2749, 3269
BmeT110I CYCGRG 1 cut(s) 1876
BmgT120I GGNCC 7 cut(s) 674, 1034, 1663, 1769, 2749, 2774, 3269
BmiI GGNNCC 6 cut(s) 846, 1398, 1465, 2044, 2362, 3270
BmrFI CCNGG 8 cut(s) 418, 489, 842, 1754, 1980, 2139, 2365, 2961
BmrI ACTGGG 4 cut(s) 355, 2849, 2860, 3035
BmsI GCATC 5 cut(s) 523, 2417, 2455, 2524, 2978
BmtI GCTAGC 1 cut(s) 377
BmuI ACTGGG 4 cut(s) 355, 2849, 2860, 3035
BpiI GAAGAC 2 cut(s) 3192, 3258
BpmI CTGGAG 1 cut(s) 1489
Bpu10I CCTNAGC 1 cut(s) 2768
Bpu14I TTCGAA 1 cut(s) 3290
BpuEI CTTGAG 5 cut(s) 265, 530, 974, 1654, 2759
BpuMI CCSGG 2 cut(s) 418, 842
Bsa29I ATCGAT 2 cut(s) 257, 2481
BsaBI GATNNNNATC 1 cut(s) 2265
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 5 cut(s) 20, 1420, 1752, 2239, 2745
Bsc4I CCNNNNNNNGG 5 cut(s) 322, 917, 1828, 2370, 3140
Bse118I RCCGGY 1 cut(s) 1903
Bse21I CCTNAGG 1 cut(s) 638
Bse3DI GCAATG 4 cut(s) 11, 883, 1999, 2454
Bse8I GATNNNNATC 1 cut(s) 2265
BseBI CCWGG 6 cut(s) 489, 1754, 1980, 2139, 2365, 2961
BseCI ATCGAT 2 cut(s) 257, 2481
BseDI CCNNGG 5 cut(s) 20, 1420, 1752, 2239, 2745
BseGI GGATG 9 cut(s) 356, 514, 2348, 2432, 2539, 2853, 3099, 3178, 3318
BseJI GATNNNNATC 1 cut(s) 2265
BseLI CCNNNNNNNGG 5 cut(s) 322, 917, 1828, 2370, 3140
BseMI GCAATG 4 cut(s) 11, 883, 1999, 2454
BseMII CTCAG 6 cut(s) 614, 629, 726, 1643, 1729, 2759
BseRI GAGGAG 1 cut(s) 3367
BseXI GCAGC 5 cut(s) 261, 599, 885, 2952, 2978
BseYI CCCAGC 1 cut(s) 1194
BsgI GTGCAG 3 cut(s) 132, 483, 2985
BshFI GGCC 6 cut(s) 81, 675, 1130, 2210, 2673, 2776
BshNI GGYRCC 3 cut(s) 844, 1396, 2360
BshVI ATCGAT 2 cut(s) 257, 2481
BsiHKAI GWGCWC 2 cut(s) 601, 2802
BsiHKCI CYCGRG 1 cut(s) 1876
BsiSI CCGG 4 cut(s) 417, 841, 971, 1904
BslFI GGGAC 4 cut(s) 1249, 2664, 2668, 3300
BslI CCNNNNNNNGG 5 cut(s) 322, 917, 1828, 2370, 3140
BsmAI GTCTC 6 cut(s) 79, 187, 214, 1950, 2830, 3216
BsmFI GGGAC 4 cut(s) 1249, 2664, 2668, 3300
BsmI GAATGC 1 cut(s) 1974
BsnI GGCC 6 cut(s) 81, 675, 1130, 2210, 2673, 2776
Bso31I GGTCTC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 1876
Bsp119I TTCGAA 1 cut(s) 3290
Bsp1286I GDGCHC 3 cut(s) 601, 925, 2802
Bsp1407I TGTACA 1 cut(s) 3335
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 3 cut(s) 2772, 2916, 2930
BspANI GGCC 6 cut(s) 81, 675, 1130, 2210, 2673, 2776
BspCNI CTCAG 6 cut(s) 613, 630, 725, 1644, 1728, 2760
BspDI ATCGAT 2 cut(s) 257, 2481
BspHI TCATGA 2 cut(s) 798, 3163
BspLI GGNNCC 6 cut(s) 846, 1398, 1465, 2044, 2362, 3270
BspMAI CTGCAG 3 cut(s) 303, 858, 2942
BspMI ACCTGC 1 cut(s) 2888
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 4 cut(s) 1033, 1990, 2638, 2845
BspQI GCTCTTC 2 cut(s) 876, 930
BspT104I TTCGAA 1 cut(s) 3290
BspT107I GGYRCC 3 cut(s) 844, 1396, 2360
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 2772
BsrDI GCAATG 4 cut(s) 11, 883, 1999, 2454
BsrFI RCCGGY 1 cut(s) 1903
BsrGI TGTACA 1 cut(s) 3335
BssAI RCCGGY 1 cut(s) 1903
BssECI CCNNGG 5 cut(s) 20, 1420, 1752, 2239, 2745
BssSI CACGAG 1 cut(s) 2611
BssT1I CCWWGG 3 cut(s) 20, 2239, 2745
Bst2BI CACGAG 1 cut(s) 2611
Bst2UI CCWGG 6 cut(s) 489, 1754, 1980, 2139, 2365, 2961
Bst6I CTCTTC 4 cut(s) 876, 930, 1354, 3305
BstAUI TGTACA 1 cut(s) 3335
BstBI TTCGAA 1 cut(s) 3290
BstC8I GCNNGC 7 cut(s) 147, 375, 409, 1057, 2116, 2445, 2774
BstDEI CTNAG 6 cut(s) 600, 638, 712, 1652, 1715, 2768
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 2 cut(s) 2723, 2919
BstENI CCTNNNNNAGG 1 cut(s) 2368
BstF5I GGATG 9 cut(s) 356, 514, 2348, 2432, 2539, 2853, 3099, 3178, 3318
BstHHI GCGC 1 cut(s) 117
BstMAI GTCTC 6 cut(s) 79, 187, 214, 1950, 2830, 3216
BstMWI GCNNNNNNNGC 6 cut(s) 511, 596, 2139, 2390, 2797, 2949
BstNI CCWGG 6 cut(s) 489, 1754, 1980, 2139, 2365, 2961
BstNSI RCATGY 4 cut(s) 1087, 2058, 3211, 3342
BstPI GGTNACC 2 cut(s) 2723, 2919
BstSCI CCNGG 8 cut(s) 416, 487, 840, 1752, 1978, 2137, 2363, 2959
BstSFI CTRYAG 3 cut(s) 299, 854, 2938
BstV1I GCAGC 5 cut(s) 261, 599, 885, 2952, 2978
BstV2I GAAGAC 2 cut(s) 3192, 3258
BstX2I RGATCY 1 cut(s) 834
BstXI CCANNNNNNTGG 2 cut(s) 1685, 1867
BstYI RGATCY 1 cut(s) 834
Bsu15I ATCGAT 2 cut(s) 257, 2481
Bsu36I CCTNAGG 1 cut(s) 638
BsuI GTATCC 1 cut(s) 2254
BsuRI GGCC 6 cut(s) 81, 675, 1130, 2210, 2673, 2776
BsuTUI ATCGAT 2 cut(s) 257, 2481
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 9 cut(s) 356, 514, 2348, 2432, 2539, 2853, 3099, 3178, 3318
BtsI GCAGTG 3 cut(s) 500, 626, 851
BveI ACCTGC 1 cut(s) 2888
Cac8I GCNNGC 7 cut(s) 147, 375, 409, 1057, 2116, 2445, 2774
CciI TCATGA 2 cut(s) 798, 3163
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 1903
Cfr13I GGNCC 7 cut(s) 674, 1034, 1663, 1769, 2749, 2774, 3269
ClaI ATCGAT 2 cut(s) 257, 2481
CseI GACGC 2 cut(s) 1986, 2343
CsiI ACCWGGT 1 cut(s) 2959
DdeI CTNAG 6 cut(s) 600, 638, 712, 1652, 1715, 2768
DraIII CACNNNGTG 1 cut(s) 2963
EaeI YGGCCR 3 cut(s) 79, 1128, 2208
Eam1104I CTCTTC 4 cut(s) 876, 930, 1354, 3305
EarI CTCTTC 4 cut(s) 876, 930, 1354, 3305
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 20, 2239, 2745
Eco24I GRGCYC 2 cut(s) 601, 925
Eco31I GGTCTC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 3301
Eco47I GGWCC 5 cut(s) 1034, 1663, 1769, 2749, 3269
Eco53kI GAGCTC 1 cut(s) 599
Eco57I CTGAAG 6 cut(s) 143, 716, 732, 1613, 1811, 1991
Eco81I CCTNAGG 1 cut(s) 638
Eco88I CYCGRG 1 cut(s) 1876
Eco91I GGTNACC 2 cut(s) 2723, 2919
EcoICRI GAGCTC 1 cut(s) 599
EcoNI CCTNNNNNAGG 1 cut(s) 2368
EcoO109I RGGNCCY 1 cut(s) 1769
EcoO65I GGTNACC 2 cut(s) 2723, 2919
EcoRI GAATTC 3 cut(s) 6, 802, 3261
EcoRII CCWGG 6 cut(s) 487, 1752, 1978, 2137, 2363, 2959
EcoRV GATATC 1 cut(s) 3301
EcoT14I CCWWGG 3 cut(s) 20, 2239, 2745
EcoT38I GRGCYC 2 cut(s) 601, 925
ErhI CCWWGG 3 cut(s) 20, 2239, 2745
FalI AAGNNNNNCTT 2 cut(s) 821, 853
FaqI GGGAC 4 cut(s) 1249, 2664, 2668, 3300
FauI CCCGC 2 cut(s) 2765, 2909
FbaI TGATCA 1 cut(s) 3229
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 5 cut(s) 250, 588, 899, 2941, 2967
FokI GGATG 9 cut(s) 343, 501, 2355, 2439, 2546, 2860, 3106, 3185, 3305
FriOI GRGCYC 2 cut(s) 601, 925
Fsp4HI GCNGC 5 cut(s) 250, 588, 899, 2941, 2967
FspBI CTAG 8 cut(s) 374, 941, 1295, 1763, 1896, 2162, 2183, 2561
GlaI GCGC 1 cut(s) 116
GluI GCNGC 5 cut(s) 250, 588, 899, 2941, 2967
GsaI CCCAGC 1 cut(s) 1198
GsuI CTGGAG 1 cut(s) 1489
HaeIII GGCC 6 cut(s) 81, 675, 1130, 2210, 2673, 2776
HapII CCGG 4 cut(s) 417, 841, 971, 1904
HgaI GACGC 2 cut(s) 1986, 2343
HhaI GCGC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 2 cut(s) 447, 1807
HindII GTYRAC 2 cut(s) 447, 1807
HindIII AAGCTT 2 cut(s) 161, 698
HpaII CCGG 4 cut(s) 417, 841, 971, 1904
HphI GGTGA 8 cut(s) 1228, 1882, 1928, 2423, 2587, 2913, 2949, 3342
Hpy166II GTNNAC 8 cut(s) 65, 269, 447, 580, 744, 1081, 1807, 2595
Hpy188I TCNGA 9 cut(s) 187, 550, 715, 1140, 1179, 1421, 2253, 2989, 3250
Hpy8I GTNNAC 8 cut(s) 65, 269, 447, 580, 744, 1081, 1807, 2595
HpyCH4IV ACGT 1 cut(s) 1793
HpyF10VI GCNNNNNNNGC 6 cut(s) 511, 596, 2139, 2390, 2797, 2949
HpyF3I CTNAG 6 cut(s) 600, 638, 712, 1652, 1715, 2768
HpySE526I ACGT 1 cut(s) 1793
HspAI GCGC 1 cut(s) 115
KpnI GGTACC 3 cut(s) 848, 1400, 2364
Ksp22I TGATCA 1 cut(s) 3229
LguI GCTCTTC 2 cut(s) 876, 930
LmnI GCTCC 5 cut(s) 596, 1469, 1971, 2048, 3041
Lsp1109I GCAGC 5 cut(s) 261, 599, 885, 2952, 2978
LweI GCATC 5 cut(s) 523, 2417, 2455, 2524, 2978
MabI ACCWGGT 1 cut(s) 2959
MaeI CTAG 8 cut(s) 374, 941, 1295, 1763, 1896, 2162, 2183, 2561
MaeII ACGT 1 cut(s) 1793
MaeIII GTNAC 8 cut(s) 86, 229, 1326, 1756, 2545, 2723, 2919, 3348
MbiI CCGCTC 1 cut(s) 2772
MfeI CAATTG 3 cut(s) 678, 2143, 2212
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 3 cut(s) 601, 925, 2802
MlsI TGGCCA 3 cut(s) 81, 1130, 2210
MluNI TGGCCA 3 cut(s) 81, 1130, 2210
MlyI GAGTC 5 cut(s) 2310, 2750, 2948, 2993, 3322
MmeI TCCRAC 6 cut(s) 961, 1329, 1473, 1842, 2373, 2906
Mox20I TGGCCA 3 cut(s) 81, 1130, 2210
MroXI GAANNNNTTC 1 cut(s) 544
MscI TGGCCA 3 cut(s) 81, 1130, 2210
MseI TTAA 8 cut(s) 1101, 1182, 1413, 1428, 1476, 2096, 2793, 3065
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 3 cut(s) 81, 1130, 2210
MspI CCGG 4 cut(s) 417, 841, 971, 1904
MspR9I CCNGG 8 cut(s) 418, 489, 842, 1754, 1980, 2139, 2365, 2961
MunI CAATTG 3 cut(s) 678, 2143, 2212
Mva1269I GAATGC 1 cut(s) 1974
MvaI CCWGG 6 cut(s) 489, 1754, 1980, 2139, 2365, 2961
MwoI GCNNNNNNNGC 6 cut(s) 511, 596, 2139, 2390, 2797, 2949
NciI CCSGG 2 cut(s) 418, 842
NcoI CCATGG 1 cut(s) 20
NheI GCTAGC 1 cut(s) 373
NlaIV GGNNCC 6 cut(s) 846, 1398, 1465, 2044, 2362, 3270
NmuCI GTSAC 3 cut(s) 86, 2919, 3348
NspI RCATGY 4 cut(s) 1087, 2058, 3211, 3342
NspV TTCGAA 1 cut(s) 3290
PaeR7I CTCGAG 1 cut(s) 1876
PagI TCATGA 2 cut(s) 798, 3163
PciI ACATGT 1 cut(s) 1083
PciSI GCTCTTC 2 cut(s) 876, 930
PctI GAATGC 1 cut(s) 1974
PdmI GAANNNNTTC 1 cut(s) 544
PflMI CCANNNNNTGG 1 cut(s) 917
PfoI TCCNGGA 2 cut(s) 487, 1978
PkrI GCNGC 5 cut(s) 251, 589, 900, 2942, 2968
PleI GAGTC 5 cut(s) 2309, 2749, 2948, 2992, 3321
PpsI GAGTC 5 cut(s) 2309, 2749, 2948, 2992, 3321
PpuMI RGGWCCY 1 cut(s) 1769
PscI ACATGT 1 cut(s) 1083
PshBI ATTAAT 1 cut(s) 1413
Psp124BI GAGCTC 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 1769
Psp6I CCWGG 6 cut(s) 487, 1752, 1978, 2137, 2363, 2959
PspEI GGTNACC 2 cut(s) 2723, 2919
PspFI CCCAGC 1 cut(s) 1194
PspGI CCWGG 6 cut(s) 487, 1752, 1978, 2137, 2363, 2959
PspN4I GGNNCC 6 cut(s) 846, 1398, 1465, 2044, 2362, 3270
PspPI GGNCC 7 cut(s) 674, 1034, 1663, 1769, 2749, 2774, 3269
PspPPI RGGWCCY 1 cut(s) 1769
PstI CTGCAG 3 cut(s) 303, 858, 2942
PsuI RGATCY 1 cut(s) 834
RseI CAYNNNNRTG 1 cut(s) 570
SacI GAGCTC 1 cut(s) 601
SapI GCTCTTC 2 cut(s) 876, 930
SaqAI TTAA 8 cut(s) 1101, 1182, 1413, 1428, 1476, 2096, 2793, 3065
SatI GCNGC 5 cut(s) 250, 588, 899, 2941, 2967
Sau96I GGNCC 7 cut(s) 674, 1034, 1663, 1769, 2749, 2774, 3269
ScaI AGTACT 2 cut(s) 1299, 2088
SchI GAGTC 5 cut(s) 2310, 2750, 2948, 2993, 3322
ScrFI CCNGG 8 cut(s) 418, 489, 842, 1754, 1980, 2139, 2365, 2961
SduI GDGCHC 3 cut(s) 601, 925, 2802
SexAI ACCWGGT 1 cut(s) 2959
SfaNI GCATC 5 cut(s) 523, 2417, 2455, 2524, 2978
SfcI CTRYAG 3 cut(s) 299, 854, 2938
Sfr274I CTCGAG 1 cut(s) 1876
SfuI TTCGAA 1 cut(s) 3290
SinI GGWCC 5 cut(s) 1034, 1663, 1769, 2749, 3269
SlaI CTCGAG 1 cut(s) 1876
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 6 cut(s) 244, 509, 989, 1633, 1876, 2738
SmoI CTYRAG 6 cut(s) 244, 509, 989, 1633, 1876, 2738
SpeI ACTAGT 1 cut(s) 1294
SsiI CCGC 3 cut(s) 2772, 2916, 2930
SspI AATATT 2 cut(s) 1582, 1845
SspMI CTAG 8 cut(s) 374, 941, 1295, 1763, 1896, 2162, 2183, 2561
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 8 cut(s) 416, 487, 840, 1752, 1978, 2137, 2363, 2959
StyI CCWWGG 3 cut(s) 20, 2239, 2745
TaiI ACGT 1 cut(s) 1796
TaqII GACCGA 1 cut(s) 1051
TatI WGTACW 6 cut(s) 303, 1297, 1550, 2086, 2147, 3335
Tru1I TTAA 8 cut(s) 1101, 1182, 1413, 1428, 1476, 2096, 2793, 3065
Tru9I TTAA 8 cut(s) 1101, 1182, 1413, 1428, 1476, 2096, 2793, 3065
TseFI GTSAC 3 cut(s) 86, 2919, 3348
TseI GCWGC 5 cut(s) 249, 587, 898, 2940, 2966
Tsp45I GTSAC 3 cut(s) 86, 2919, 3348
TspGWI ACGGA 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 917
VpaK11BI GGWCC 5 cut(s) 1034, 1663, 1769, 2749, 3269
VspI ATTAAT 1 cut(s) 1413
XagI CCTNNNNNAGG 1 cut(s) 2368
XbaI TCTAGA 3 cut(s) 1762, 2161, 2182
XceI RCATGY 4 cut(s) 1087, 2058, 3211, 3342
XcmI CCANNNNNNNNNTGG 3 cut(s) 18, 1594, 2032
XhoI CTCGAG 1 cut(s) 1876
XmiI GTMKAC 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 8 cut(s) 374, 941, 1295, 1763, 1896, 2162, 2183, 2561
ZrmI AGTACT 2 cut(s) 1299, 2088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.