RchiOBHm_Chr3g0478141

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000047
Physical Location & Seq
Forward (+)
23989704 .. 23992814
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44338

Sequence Viewer

Length: 3111 bp
ATGCCCACTCTGTTCCTCCATTTCTTCCTTTTCTTATTCACTACCACCGTCACTAACCTCATCCCCGCAGTTCACAGCAACTGCATTGAAGCCCAGCAACAATCATTGCTCCATTTCAAGAAAAGTCTTGAATCTGATTCTTCCAATCTTATCACATGGAATTCGAGTACCGACTGCTGTTCTTGGCTCGGTGTAAATTGCAGCACCAATGGGAGTGTTGTCGGTCTTGACCTCAGCAGGGAGTATATCTCAGGCAGCATTGACAATTCCAGCAGTCTGTTCCAACTTGAACATCTTCAGAGCCTCAATTTGGCCGAGAACGACTTCAATGGCTCTTCAATTCCATCTGCAATTGGAAAGCTTGCAAATTTGAGGTATTTGAATTTACATGAAGCTAATTTTTCAGGGCAAATTCTCATTGAGCTTGCACGCTTGACAAGGTTGAAGGTTCTTGATCTCTCTTCAAGTCACCTTTCCGAGCATGTGGGGTTAAAACTTGAGAACCCGAATTTAGGCATGCTAATCCAAAACCTTACAGAGCTTACAGATCTAAATCTTGATTTTGTAAGCCTATCAGCTGAGGGATCTCTATGGAGCCAAACCATATCATCTTCACTTCCAAAGCTGAGGGTGTTGACCTTGCACACTTGTGATCTTTCAGGCTCTATTCATGAATCATTTGCCAGGCTTGATTCTCTATCCACGTTAGTATTGGATGGAAACTTTATCTCTGGTCCGGTTCCAAAATTCTTTGCCAATTTTTCAAGCTTGATTTCCTTGAGTCTCTCTGGTTGTGACTTGTATGGAGCATTTCCCAAAGAGATATTCCAGATACCTTCACTACAGTATGTTGACGTAAGTTATAATTCAGAGCTTCATGGTTCCTTACCGGAGTTTCCAAAGAATGGATCTCTCGAAATCCTATATCTATACGGCACCAAGTTTTCAGGAGTCTTGCCGGACTCTATTGGCAACCTTAAAATGTTGTCTATCCTAGTCCTTAGAGATTGCAATTTCACAGGAGCAGTTCCAAAGTCACTGGCAAACCTAACACAATTGGGGTCTTTGGACTTGTCATCCAACAAGTTTTCTAGTCCGATTGATTCTATTCAATGGGACAAACTCATCAAGCTTGAGTATCTATACTTGACCAACAATCTACTCTACGGGAGTATTCCATCACCTCATTTTCCTATTTCCTTGCTGCAGTTACGTCTTTCTGGAAATCACTTCTCTGGTCAGTTGCTCGAATTTTCTAATGTCTCTTCGTACTCGCTGTACTTCATTGATTTGAGTAGCAACAATTTGCAAGGATCAATACCCGTGTCTATGTTTACTCTTCCGGAGCTTGATATGTTTTATCTTTCTTCAAACAACTTTAGTGGTTTTTCTTTTTATGGCCTTCAGAAGTCGATAGATTTTTTGTTTCTTGATCTATCCTACAATAGCTTGTTGTTCAATCATAATGGTACCAAGTCATGGCCGCCCTCCCTCCAGATTCGGAATCTGTATTTGGCTTTTAACAAGTTGAAAACATTCCCAAGTTTCCTGAAAAATCAATCTATTTTAGAGTCCTTGGACCTTTCACACAACCAGATTCCAGGTCAGATACCCATTTGGATTTGGGAGCTTCCTCTGATCGATACTCTAAATCTAAGTTGTAACAAGTTGGTAAGTCTAGAAGCTCCTTTACTTGGTTCTACATACCATCTGACCAATCTTGATCTTCACTCAAACCAGATTCAGGGACAAATACCACTGTTTATAAGTGGTGAGTATTTGGATTACTCAAGAAATAATTTCAGCTCTAGCATACCAATTGACATTGGTGATTTCATGTCTTCCACGTTCTCCCTTTCTCTTTCAAGCAGTAACTTGTATGGGGATATTCCAGAATTAATATGCAATATAAGTGTTGCAGTTCTTGATCTCTCTAATAACTCTTTGAATGGAATCATTCCCCAATGCTTGACTCAGACATCTTCGCTTAAAGTCCTTGATTTGAGGAGAAACAACCTTACTGGATCTATCCCCGATACTTTTCTTGAAGGTTGTAATTTGGAGACTCTAGCTCTGAGCAGAAATCAAATACAAGGTCAATTTCCAAAATCACTAGTCAATTGTTCAAGCTTAAAGGTTTTAGACCTTGGAATCAATCAAATAACAGATGCCTTTCCCTGCCCGTTGAAGACCATATCCACCATGCGTGTTCTTATGTTGCGATCCAACAAATTTTATGGACCCATTGGATGTCCTGAGACCAATGGCACCTGGCCGAAGCTTCAAATCATAGACTTAGCTCATAACAGTTTCAATGGTGAAATACCAGGTACATCATTGACAACATGGCGGGCAATGATGGTTGATGGAGATGATGACCGAAATTACCTTGGCTTTTTTTGGTCACAAGATGGTAGATTTGGGCTCTCTATGAGTTATGGAGATGCAGTAACAGCTACAAGCAAAGGTTTGGAGTTGGATCTGATAAAGATTCTAACTATCTTCACCTTGATTGATTTCTCTTCCAACAATTTTAGCGGATCAATACCCAAGGAAATGGGCGAACTGAGATCATTATATGTCCTCAATCTGTCCAGTAATGCTTTCACCGGCGAAATCCCATCATCCTTTGGTAACATGAGAAACATAGAGTCCTTAGACCTCTCACAGAACCACCTGAGCGGCCAAATTCCACCGCAGTTTGCAAATCTCAATTTCCTTTCGTACTTGAATGTCTCATATAATCAATTGACGGGAAGGATCCCAACCAGCACTCAGTTTTCGACATTTCCAAATACCTCCTTCGAGGGTAATAAAGGATTATGGGGGCCTCCTCTGACAGCAATCGTTATGCCACCTCCAACGTTTAATGGAAGCTCAAGTGATCCAAATTCTGGAGATGAGATTGATTGGAATGTTATCAGTGCTGAAATTGGATTTACATGTGGGTTTGGAATTGCCGTCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTACTACAGAGCTATGTTTAACATCCTGTTCAAGATATTCCCTCAGCTGGAACACAGATTTGGTAATCACAGAAGGCATGTTTACATAAATCAAAGGTATTGGAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1036

Amino Acids

115.28

Weight (kDa)

5.52

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 7.8e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 91 - 217 2.7e-06 Leucine-rich repeat region
LRR_8 PF13855 329 - 388 4.3e-06 Leucine rich repeat
LRR_8 PF13855 500 - 557 1.5e-06 Leucine rich repeat
LRR_8 PF13855 639 - 681 3.1e-06 Leucine rich repeat
LRR_8 PF13855 857 - 917 6.7e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 864, 1766
Acc65I GGTACC 1 cut(s) 1469
AccB1I GGYRCC 3 cut(s) 935, 1469, 2267
AccB7I CCANNNNNTGG 3 cut(s) 905, 1479, 2894
AccBSI CCGCTC 1 cut(s) 2682
AccIII TCCGGA 1 cut(s) 1342
AciI CCGC 6 cut(s) 66, 1484, 2350, 2538, 2682, 2696
AclI AACGTT 1 cut(s) 2864
AcoI YGGCCR 4 cut(s) 312, 1481, 2273, 2683
AcuI CTGAAG 2 cut(s) 281, 1388
AfaI GTAC 7 cut(s) 169, 1271, 1280, 1471, 2332, 2726, 3002
AfiI CCNNNNNNNGG 9 cut(s) 238, 310, 512, 905, 1479, 1694, 1744, 2894, 3046
AflIII ACRYGT 1 cut(s) 2942
AhlI ACTAGT 1 cut(s) 2113
AjnI CCWGG 4 cut(s) 683, 1600, 2270, 2326
AjuI GAANNNNNNNTTGG 6 cut(s) 809, 841, 1496, 1528, 3042, 3074
AleI CACNNNNGTG 1 cut(s) 648
Alw26I GTCTC 6 cut(s) 788, 1267, 2057, 2252, 2740, 3097
AlwNI CAGNNNCTG 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 1342
AoxI GGCC 6 cut(s) 312, 1399, 1481, 2273, 2683, 2828
ApeKI GCWGC 3 cut(s) 201, 255, 1204
ArsI GACNNNNNNTTYG 2 cut(s) 2080, 2112
AseI ATTAAT 1 cut(s) 1898
Asp700I GAANNNNTTC 3 cut(s) 294, 323, 1535
Asp718I GGTACC 1 cut(s) 1469
AspS9I GGNCC 4 cut(s) 734, 1579, 2240, 2828
AsuHPI GGTGA 7 cut(s) 461, 1173, 1784, 1841, 2330, 2497, 2599
AvaII GGWCC 3 cut(s) 734, 1579, 2240
BamHI GGATCC 1 cut(s) 2760
BanI GGYRCC 3 cut(s) 935, 1469, 2267
BanII GRGCYC 1 cut(s) 2427
BarI GAAGNNNNNNTAC 2 cut(s) 1674, 1706
BbsI GAAGAC 2 cut(s) 1833, 2195
BbvCI CCTCAGC 4 cut(s) 233, 579, 626, 3042
BbvI GCAGC 3 cut(s) 213, 267, 1191
BccI CCATC 9 cut(s) 352, 710, 1186, 1716, 2353, 2360, 2405, 2629, 2982
BceAI ACGGC 2 cut(s) 949, 2945
BciT130I CCWGG 4 cut(s) 685, 1602, 2272, 2328
BcoDI GTCTC 6 cut(s) 788, 1267, 2057, 2252, 2740, 3097
BcuI ACTAGT 1 cut(s) 2113
BfaI CTAG 6 cut(s) 995, 1092, 1679, 1809, 2069, 2114
BfmI CTRYAG 3 cut(s) 842, 1205, 3004
BglII AGATCT 1 cut(s) 547
BisI GCNGC 5 cut(s) 202, 256, 1205, 1484, 2683
BlsI GCNGC 5 cut(s) 203, 257, 1206, 1485, 2684
Bme1390I CCNGG 4 cut(s) 685, 1602, 2272, 2328
Bme18I GGWCC 3 cut(s) 734, 1579, 2240
BmgT120I GGNCC 4 cut(s) 734, 1579, 2240, 2828
BmiI GGNNCC 9 cut(s) 596, 741, 883, 937, 1471, 2242, 2269, 2762, 2829
BmrFI CCNGG 4 cut(s) 685, 1602, 2272, 2328
BmsI GCATC 2 cut(s) 2158, 2434
BpiI GAAGAC 2 cut(s) 1833, 2195
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 2 cut(s) 1478, 2916
Bpu10I CCTNAGC 5 cut(s) 233, 579, 626, 2678, 3042
BpuEI CTTGAG 5 cut(s) 518, 799, 1154, 1774, 2863
Bsa29I ATCGAT 1 cut(s) 1641
BsaBI GATNNNNATC 1 cut(s) 552
BsaI GGTCTC 1 cut(s) 2252
BsaJI CCNNGG 4 cut(s) 1575, 2146, 2389, 2550
BsaWI WCCGGW 3 cut(s) 736, 889, 1342
BsaXI ACNNNNNCTCC 2 cut(s) 2433, 2463
Bsc4I CCNNNNNNNGG 9 cut(s) 238, 310, 512, 905, 1479, 1694, 1744, 2894, 3046
Bse118I RCCGGY 1 cut(s) 2609
Bse1I ACTGG 3 cut(s) 1044, 2026, 2595
Bse3DI GCAATG 2 cut(s) 104, 2361
Bse8I GATNNNNATC 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 1342
BseBI CCWGG 4 cut(s) 685, 1602, 2272, 2328
BseCI ATCGAT 1 cut(s) 1641
BseDI CCNNGG 4 cut(s) 1575, 2146, 2389, 2550
BseGI GGATG 6 cut(s) 60, 721, 1076, 2255, 2624, 3021
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 9 cut(s) 238, 310, 512, 905, 1479, 1694, 1744, 2894, 3046
BseMI GCAATG 2 cut(s) 104, 2361
BseNI ACTGG 3 cut(s) 1044, 2026, 2595
BseRI GAGGAG 2 cut(s) 2020, 2823
BseXI GCAGC 3 cut(s) 213, 267, 1191
BseYI CCCAGC 1 cut(s) 93
BshFI GGCC 6 cut(s) 314, 1401, 1483, 2275, 2685, 2830
BshNI GGYRCC 3 cut(s) 935, 1469, 2267
BshVI ATCGAT 1 cut(s) 1641
BsiSI CCGG 5 cut(s) 737, 890, 959, 1343, 2610
BslFI GGGAC 2 cut(s) 1130, 1761
BslI CCNNNNNNNGG 9 cut(s) 238, 310, 512, 905, 1479, 1694, 1744, 2894, 3046
BsmAI GTCTC 6 cut(s) 788, 1267, 2057, 2252, 2740, 3097
BsmBI CGTCTC 1 cut(s) 3097
BsmFI GGGAC 2 cut(s) 1130, 1761
BsnI GGCC 6 cut(s) 314, 1401, 1483, 2275, 2685, 2830
Bso31I GGTCTC 1 cut(s) 2252
Bsp1286I GDGCHC 1 cut(s) 2427
Bsp13I TCCGGA 1 cut(s) 1342
BspACI CCGC 6 cut(s) 66, 1484, 2350, 2538, 2682, 2696
BspANI GGCC 6 cut(s) 314, 1401, 1483, 2275, 2685, 2830
BspDI ATCGAT 1 cut(s) 1641
BspEI TCCGGA 1 cut(s) 1342
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 9 cut(s) 596, 741, 883, 937, 1471, 2242, 2269, 2762, 2829
BspMAI CTGCAG 1 cut(s) 1209
BspQI GCTCTTC 1 cut(s) 340
BspT107I GGYRCC 3 cut(s) 935, 1469, 2267
BspTNI GGTCTC 1 cut(s) 2252
BsrBI CCGCTC 1 cut(s) 2682
BsrDI GCAATG 2 cut(s) 104, 2361
BsrFI RCCGGY 1 cut(s) 2609
BsrI ACTGG 3 cut(s) 1044, 2026, 2595
BssAI RCCGGY 1 cut(s) 2609
BssECI CCNNGG 4 cut(s) 1575, 2146, 2389, 2550
BssT1I CCWWGG 4 cut(s) 1575, 2146, 2389, 2550
Bst2UI CCWGG 4 cut(s) 685, 1602, 2272, 2328
Bst4CI ACNGT 4 cut(s) 49, 846, 1761, 2309
Bst6I CTCTTC 5 cut(s) 340, 466, 1270, 1344, 2527
BstC8I GCNNGC 5 cut(s) 363, 426, 430, 518, 2352
BstF5I GGATG 6 cut(s) 60, 721, 1076, 2255, 2624, 3021
BstMAI GTCTC 6 cut(s) 788, 1267, 2057, 2252, 2740, 3097
BstMWI GCNNNNNNNGC 1 cut(s) 2453
BstNI CCWGG 4 cut(s) 685, 1602, 2272, 2328
BstNSI RCATGY 4 cut(s) 485, 520, 2946, 3080
BstSCI CCNGG 4 cut(s) 683, 1600, 2270, 2326
BstSFI CTRYAG 3 cut(s) 842, 1205, 3004
BstV1I GCAGC 3 cut(s) 213, 267, 1191
BstV2I GAAGAC 2 cut(s) 1833, 2195
BstX2I RGATCY 6 cut(s) 547, 584, 908, 2024, 2479, 2760
BstXI CCANNNNNNTGG 1 cut(s) 2557
BstYI RGATCY 6 cut(s) 547, 584, 908, 2024, 2479, 2760
Bsu15I ATCGAT 1 cut(s) 1641
BsuRI GGCC 6 cut(s) 314, 1401, 1483, 2275, 2685, 2830
BsuTUI ATCGAT 1 cut(s) 1641
BtsCI GGATG 6 cut(s) 60, 721, 1076, 2255, 2624, 3021
BtsIMutI CAGTG 3 cut(s) 1037, 1757, 2929
Cac8I GCNNGC 5 cut(s) 363, 426, 430, 518, 2352
CaiI CAGNNNCTG 1 cut(s) 81
CciI TCATGA 1 cut(s) 670
Cfr10I RCCGGY 1 cut(s) 2609
Cfr13I GGNCC 4 cut(s) 734, 1579, 2240, 2828
ClaI ATCGAT 1 cut(s) 1641
CsiI ACCWGGT 1 cut(s) 2326
Csp6I GTAC 7 cut(s) 168, 1270, 1279, 1470, 2331, 2725, 3001
CspCI CAANNNNNGTGG 2 cut(s) 1363, 1398
CviQI GTAC 7 cut(s) 168, 1270, 1279, 1470, 2331, 2725, 3001
EaeI YGGCCR 4 cut(s) 312, 1481, 2273, 2683
Eam1104I CTCTTC 5 cut(s) 340, 466, 1270, 1344, 2527
EarI CTCTTC 5 cut(s) 340, 466, 1270, 1344, 2527
Eco130I CCWWGG 4 cut(s) 1575, 2146, 2389, 2550
Eco24I GRGCYC 1 cut(s) 2427
Eco31I GGTCTC 1 cut(s) 2252
Eco47I GGWCC 3 cut(s) 734, 1579, 2240
Eco57I CTGAAG 2 cut(s) 281, 1388
EcoO109I RGGNCCY 1 cut(s) 2828
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 4 cut(s) 683, 1600, 2270, 2326
EcoT14I CCWWGG 4 cut(s) 1575, 2146, 2389, 2550
EcoT38I GRGCYC 1 cut(s) 2427
ErhI CCWWGG 4 cut(s) 1575, 2146, 2389, 2550
Esp3I CGTCTC 1 cut(s) 3097
FaqI GGGAC 2 cut(s) 1130, 1761
FauI CCCGC 2 cut(s) 73, 2343
Fnu4HI GCNGC 5 cut(s) 202, 256, 1205, 1484, 2683
FokI GGATG 6 cut(s) 47, 728, 1063, 2262, 2611, 3008
FriOI GRGCYC 1 cut(s) 2427
Fsp4HI GCNGC 5 cut(s) 202, 256, 1205, 1484, 2683
FspBI CTAG 6 cut(s) 995, 1092, 1679, 1809, 2069, 2114
GluI GCNGC 5 cut(s) 202, 256, 1205, 1484, 2683
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 2 cut(s) 1478, 2916
HaeIII GGCC 6 cut(s) 314, 1401, 1483, 2275, 2685, 2830
HapII CCGG 5 cut(s) 737, 890, 959, 1343, 2610
HincII GTYRAC 2 cut(s) 636, 853
HindII GTYRAC 2 cut(s) 636, 853
HindIII AAGCTT 5 cut(s) 359, 766, 1130, 2128, 2279
HpaII CCGG 5 cut(s) 737, 890, 959, 1343, 2610
HphI GGTGA 7 cut(s) 461, 1173, 1784, 1841, 2330, 2497, 2599
Hpy166II GTNNAC 5 cut(s) 73, 636, 853, 1335, 3082
Hpy8I GTNNAC 5 cut(s) 73, 636, 853, 1335, 3082
Hpy99I CGWCG 1 cut(s) 2966
HpyAV CCTTC 7 cut(s) 439, 846, 1412, 2042, 2751, 2812, 3066
HpyCH4III ACNGT 4 cut(s) 49, 846, 1761, 2309
HpyCH4IV ACGT 6 cut(s) 704, 855, 1213, 1847, 2864, 3106
HpyF10VI GCNNNNNNNGC 1 cut(s) 2453
HpySE526I ACGT 6 cut(s) 704, 855, 1213, 1847, 2864, 3106
Kpn2I TCCGGA 1 cut(s) 1342
KpnI GGTACC 1 cut(s) 1473
LguI GCTCTTC 1 cut(s) 340
LmnI GCTCC 7 cut(s) 114, 594, 806, 1022, 1345, 1627, 1690
Lsp1109I GCAGC 3 cut(s) 213, 267, 1191
LweI GCATC 2 cut(s) 2158, 2434
MabI ACCWGGT 1 cut(s) 2326
MaeI CTAG 6 cut(s) 995, 1092, 1679, 1809, 2069, 2114
MaeII ACGT 6 cut(s) 704, 855, 1213, 1847, 2864, 3106
MbiI CCGCTC 1 cut(s) 2682
MfeI CAATTG 5 cut(s) 351, 1055, 1818, 2119, 2747
MflI RGATCY 6 cut(s) 547, 584, 908, 2024, 2479, 2760
MhlI GDGCHC 1 cut(s) 2427
MlyI GAGTC 7 cut(s) 790, 956, 960, 1580, 1966, 2059, 2660
MmeI TCCRAC 6 cut(s) 307, 1104, 2250, 2457, 2550, 2885
MroI TCCGGA 1 cut(s) 1342
MroXI GAANNNNTTC 3 cut(s) 294, 323, 1535
MseI TTAA 8 cut(s) 491, 978, 1521, 1898, 1989, 2132, 2868, 3018
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 578, 3046
MspI CCGG 5 cut(s) 737, 890, 959, 1343, 2610
MspR9I CCNGG 4 cut(s) 685, 1602, 2272, 2328
MunI CAATTG 5 cut(s) 351, 1055, 1818, 2119, 2747
MvaI CCWGG 4 cut(s) 685, 1602, 2272, 2328
MwoI GCNNNNNNNGC 1 cut(s) 2453
NlaIV GGNNCC 9 cut(s) 596, 741, 883, 937, 1471, 2242, 2269, 2762, 2829
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 6 cut(s) 49, 467, 794, 1035, 2403, 2967
NspI RCATGY 4 cut(s) 485, 520, 2946, 3080
OliI CACNNNNGTG 1 cut(s) 648
PaeI GCATGC 1 cut(s) 520
PagI TCATGA 1 cut(s) 670
PciI ACATGT 1 cut(s) 2942
PciSI GCTCTTC 1 cut(s) 340
PdmI GAANNNNTTC 3 cut(s) 294, 323, 1535
PflMI CCANNNNNTGG 3 cut(s) 905, 1479, 2894
PkrI GCNGC 5 cut(s) 203, 257, 1206, 1485, 2684
PleI GAGTC 7 cut(s) 789, 956, 959, 1579, 1966, 2059, 2659
PpsI GAGTC 7 cut(s) 789, 956, 959, 1579, 1966, 2059, 2659
PscI ACATGT 1 cut(s) 2942
PshBI ATTAAT 1 cut(s) 1898
PsiI TTATAA 2 cut(s) 864, 1766
Psp1406I AACGTT 1 cut(s) 2864
Psp6I CCWGG 4 cut(s) 683, 1600, 2270, 2326
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 4 cut(s) 683, 1600, 2270, 2326
PspN4I GGNNCC 9 cut(s) 596, 741, 883, 937, 1471, 2242, 2269, 2762, 2829
PspPI GGNCC 4 cut(s) 734, 1579, 2240, 2828
PstI CTGCAG 1 cut(s) 1209
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 6 cut(s) 547, 584, 908, 2024, 2479, 2760
PvuII CAGCTG 2 cut(s) 578, 3046
RsaI GTAC 7 cut(s) 169, 1271, 1280, 1471, 2332, 2726, 3002
RsaNI GTAC 7 cut(s) 168, 1270, 1279, 1470, 2331, 2725, 3001
RseI CAYNNNNRTG 1 cut(s) 648
SapI GCTCTTC 1 cut(s) 340
SaqAI TTAA 8 cut(s) 491, 978, 1521, 1898, 1989, 2132, 2868, 3018
SatI GCNGC 5 cut(s) 202, 256, 1205, 1484, 2683
Sau96I GGNCC 4 cut(s) 734, 1579, 2240, 2828
SchI GAGTC 7 cut(s) 790, 956, 960, 1580, 1966, 2059, 2660
ScrFI CCNGG 4 cut(s) 685, 1602, 2272, 2328
SduI GDGCHC 1 cut(s) 2427
SexAI ACCWGGT 1 cut(s) 2326
SfaNI GCATC 2 cut(s) 2158, 2434
SfcI CTRYAG 3 cut(s) 842, 1205, 3004
SgrAI CRCCGGYG 1 cut(s) 2609
SinI GGWCC 3 cut(s) 734, 1579, 2240
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 5 cut(s) 497, 778, 1133, 1789, 2878
SmoI CTYRAG 5 cut(s) 497, 778, 1133, 1789, 2878
SpeI ACTAGT 1 cut(s) 2113
SphI GCATGC 1 cut(s) 520
SsiI CCGC 6 cut(s) 66, 1484, 2350, 2538, 2682, 2696
SspMI CTAG 6 cut(s) 995, 1092, 1679, 1809, 2069, 2114
StyD4I CCNGG 4 cut(s) 683, 1600, 2270, 2326
StyI CCWWGG 4 cut(s) 1575, 2146, 2389, 2550
TaaI ACNGT 4 cut(s) 49, 846, 1761, 2309
TaiI ACGT 6 cut(s) 707, 858, 1216, 1850, 2867, 3109
TaqI TCGA 7 cut(s) 164, 915, 1248, 1412, 1641, 2783, 2805
TaqII GACCGA 2 cut(s) 212, 2394
TatI WGTACW 1 cut(s) 1278
TauI GCSGC 2 cut(s) 1486, 2685
Tru1I TTAA 8 cut(s) 491, 978, 1521, 1898, 1989, 2132, 2868, 3018
Tru9I TTAA 8 cut(s) 491, 978, 1521, 1898, 1989, 2132, 2868, 3018
TscAI CASTG 3 cut(s) 1044, 1764, 2929
TseFI GTSAC 6 cut(s) 49, 467, 794, 1035, 2403, 2967
TseI GCWGC 3 cut(s) 201, 255, 1204
Tsp45I GTSAC 6 cut(s) 49, 467, 794, 1035, 2403, 2967
TspDTI ATGAA 6 cut(s) 405, 659, 687, 866, 1273, 1825
TspRI CASTG 3 cut(s) 1044, 1764, 2929
Van91I CCANNNNNTGG 3 cut(s) 905, 1479, 2894
VpaK11BI GGWCC 3 cut(s) 734, 1579, 2240
VspI ATTAAT 1 cut(s) 1898
XbaI TCTAGA 1 cut(s) 1678
XceI RCATGY 4 cut(s) 485, 520, 2946, 3080
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XmnI GAANNNNTTC 3 cut(s) 294, 323, 1535
XspI CTAG 6 cut(s) 995, 1092, 1679, 1809, 2069, 2114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.