RchiOBHm_Chr3g0462001

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000047
Physical Location & Seq
Forward (+)
9852429 .. 9855650
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42839

Sequence Viewer

Length: 3222 bp
ATGAAATCTTGGCTACATTTCTTCCTTCTCTTAGTCACACTCTGGGTTAGTATCATCATCATCATCCCTCTAGTTCATAGCAAGTGTATTCCAGACCAGCAACAATCATTGCTCGATTTCAAGAGCAGCCTTTTATTCAATTCCTCTCTTTCCTCCAAGCTTATTACCTGGAACTCAAGTACCGATTGCTGCTCTTGGGTCGGAGTTACTTGCAACACCAATGGCCGTGTTCTGGGTCTTGACCTCAGCAGTGAATCAATCTCAGGTGGCATTGACAATTCCAGCGGTCTCTTCCATCTTCAGCATCTTCAAAGGCTCAATTTGGCAGACAACGAACTCGGCAACGGCTCTCAATCAATTCCATCTGCAGTCGGGCAGCTCATGAATTTGAGGTATCTAAATTTATCTCAAAATGCTTATTCAGGGCAAATCCCGATTGAGATTTCACGCTTGACAAGGTTGGCAGTTCTTGATATTTCTCTAAATTATTTCATCGTTGATCCCTATAAGTATATTTATGAGGTCAAACTTGAGATCTCAAATTTACACATGCTGGTAGAGAACCTCACAGAGCTTAGAGAGTTGTATCTTGATGATGTCCAAATACCAGCAGAGGGGAGTGAGTGGTGCCAAGCCATATCATCTTCCCTTCCCAACCTCAGGGTGTTGAGCTTGTCCTATTGTAATCTTTCAGGCCCTTTTAACGAGTCTCTTGCTAACCTCCGATCTCTCTCCGTGATTCTATTGGGATTGAACAATATCTCTGCTCCAGTTCCAGCATTCTTTGCCAACTTTTCAAACTTGACATCCTTGATTCTCAATGATTGTAATTTGCAAGGAACATTTCCGAAAGAGATCTTTCAGTTACCTTCTCTACGTGGGATTAGCCTTTTTCAAAATGAAAAACTTGATGGTTCCTTGCCAGAATTTCCAAAGAATGGATCTCTTCAATACCTGGATCTAAGCGGGACTAATTTTTTAGGGGCATTACCAAACTCTATTGGCAACCTCAAAATGTTGTCCGCAGTTGATATTGGAGGCTGTAATTTCACAGGATCAATCCCCAAGTCAATGACAAACCTTACACAATTGGTTTCTTTGTGGATGTATGGAAACAACTTTGAAGGTTCAATTCCGTCATTCAGTGGGGCCAAGAATCTAGAAGACATAGTCCTCTTTTCAAATGGTTTGACAGGTAATATTAATTGCAACAACTGGGGAAACCTTACTAACCTAGTTTCTCTCGACTTATCTTACAATATGCTCAGTGGGAATATTCCATCATCTCTATTTTCTCTTCCCTCGCTGAATGATATTGATCTTTCTGACAACCAATTCTTTGGTCATTTTCCTGAAATTTCTAATCTCTCATCCTACTATGTCAAAGGCCTTTATTTGAGGAAAAACAATCTGGAAGGGCCAATACCCATGTCTATCTTTAATTTTCGGGGTCTTACAAGTCTTTATCTTTCTTCAAATAATTTCAGTGGCTCATTTCCTCTAGATGGTCTTCAACATCTGAGAAATCTTTCTTCCCTTGATCTTTCACACAATAGCTTGCTTCTTAGCCATGATGTTACCAATTTATCATATTCCTACTTTCCTCAGTTTGATTATTTGGGGTTGGCTTCATTAAACTTGAGAACATTCCCTGATTTCTTGAGAAATCAATCTAAATTACTTTCTTTAGATCTTTCAGATAACCAGATACAGGGCAAGATACCCAACTGGATTTGGAGGTCCAATAATCTCCATTACCTAAATCTTTCGTGTAACTCTCTAGAAACTCTAGAAGGTCATACAATCAATCTCACTTCTATGGAATCCCTTGACCTTCATTCCAACAAGCTTCATGGGAAAATCCCAATTTCCTCGTCACCTAACATGCTTTATCTGGATTACTCAAGGAACAACTTCAGCTCTACCATACCAACTACCATTGAAGATATGATTCTTCACACCAGATTCTTCTCTGTTTCTAGCAATAACCTTCAAGGGATCATCCCAGGATCAATATGCAATACAGATAGCCTTGAGGTTCTTGATATGTCAAATAATTCCTTGAGTGGCACAGTACCTCACTGCTTGACAACAATGAGCACTCTTTCGGTACTTAATTTAAGGAGAAACAATCTTAGAAATGTATACATGTTGTCTCACAATTGCAGTCTGCATACTCTAGACATCAGTGAAAATCATATACAAAGTCAGTTTCTAAAATCACTCGTCAAGTGCCCTCAATTACAGGTTCTGAACCTTGGAAAGAATCAAATAACAGGTCCATTTCCATGCTTTTTGAAGGACATATCCACCCTGCGTGTCCTTATCTTGCGATCCAATAAATTTTATGGAGGTATTAGTTGTCCCAAAATTAATGGCACTTGGCCAATGCTTCAAATCATAGATCTGGCTCACAACAATTTTAGTGGAAATGTATCAGGGATAGCATTGACAACTTGGCAAGCAATGATGGCTAATGAAGATGATGCCTCATCAAATCTCAATCACCTTCAATTTCAGGACAATAGCTCTGGTGTGATTTATTATCAGGATACAGTTACAATTACCAACAAAGGTTTCGAGATGGAGCTGGTAAAGATTTTAACAGTCTTCACCTCGATTGACTTCTCATGCAACAATTTCAACGGATCAATACCCTATGAAATTGGAGAACTCAAATCACTACATATCCTCAACTTATCCAATAATGCCTTCACAGGTGCAATTCCATCATCATTAAGCAATTTGAGTCAGCTAGAGTCTTTGGACCTCTCACAGAACACCTTGAGTGGTCAAATTCCACTACAGCTTACAAAACTCACTTTCCTTTCGTTCTTGAATCTGTCACATAATCAATTGGTCGGCAAGATTCCGAGTAGTAACCAATTTCCAACATTTCCAAAATCTTCCTTTGAAGGAAACAAAGATTTATTCGGGCCTCCTTTGACTGAAGAAAACAGAACAAGGTTGTCATCTCCGACAACAAAAAGAACCCATCCAAGTTATGGAGATGAGATTGATTGGAATATAGTCATTGTTGAGATTGGATTTACATGTGGGTTCGGAATTGTTCTCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTATAGAGCTATGTATAGCATTCTTGTGAAGATATTTCCTCAGCTGGAACAAAGGTTTGGTCATCACAGAAGACATGTGTACATAGGTGAAAGGTACCGGAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1073

Amino Acids

119.89

Weight (kDa)

6.2

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 72 3e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 315 - 441 1.8e-09 Leucine-rich repeat region
LRR_8 PF13855 463 - 520 3e-06 Leucine rich repeat
LRR_8 PF13855 559 - 617 5.5e-06 Leucine rich repeat
LRR_8 PF13855 658 - 712 3.8e-07 Leucine rich repeat
LRR_8 PF13855 723 - 782 3.6e-06 Leucine rich repeat
LRR_14 PF23598 884 - 950 4e-06 Leucine-rich repeat region
LRR_8 PF13855 894 - 953 5.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 3207
AccB1I GGYRCC 2 cut(s) 627, 3207
AccB7I CCANNNNNTGG 2 cut(s) 938, 3005
AccI GTMKAC 1 cut(s) 2145
AciI CCGC 3 cut(s) 285, 966, 1023
AclWI GGATC 8 cut(s) 494, 949, 966, 1063, 2006, 2017, 2328, 2656
AcoI YGGCCR 2 cut(s) 223, 2384
AcsI RAATTY 7 cut(s) 385, 400, 541, 926, 1356, 2342, 2796
AcuI CTGAAG 3 cut(s) 284, 1900, 2970
AfaI GTAC 5 cut(s) 181, 2076, 2112, 3194, 3209
AfiI CCNNNNNNNGG 7 cut(s) 232, 614, 660, 938, 1505, 1711, 3005
AflIII ACRYGT 3 cut(s) 2148, 3053, 3187
AjnI CCWGG 3 cut(s) 167, 954, 2005
AjuI GAANNNNNNNTTGG 6 cut(s) 2561, 2593, 2696, 2728, 3153, 3185
Alw21I GWGCWC 1 cut(s) 2102
Alw26I GTCTC 4 cut(s) 293, 714, 2160, 3208
AlwI GGATC 8 cut(s) 494, 949, 966, 1063, 2006, 2017, 2328, 2656
AlwNI CAGNNNCTG 1 cut(s) 2251
Ama87I CYCGRG 1 cut(s) 3074
AoxI GGCC 7 cut(s) 223, 694, 1149, 1387, 1418, 2384, 2936
ApeKI GCWGC 3 cut(s) 126, 189, 376
ApoI RAATTY 7 cut(s) 385, 400, 541, 926, 1356, 2342, 2796
ArsI GACNNNNNNTTYG 4 cut(s) 2263, 2295, 3157, 3189
AseI ATTAAT 2 cut(s) 1203, 2373
Asp700I GAANNNNTTC 2 cut(s) 1528, 1913
Asp718I GGTACC 1 cut(s) 3207
AspS9I GGNCC 7 cut(s) 695, 1149, 1418, 1740, 2279, 2767, 2936
AsuHPI GGTGA 4 cut(s) 1869, 2498, 2605, 3212
AvaI CYCGRG 1 cut(s) 3074
AvaII GGWCC 3 cut(s) 1740, 2279, 2767
AxyI CCTNAGG 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 2237
BaeI ACNNNNGTAYC 2 cut(s) 163, 196
BalI TGGCCA 1 cut(s) 2386
BanI GGYRCC 2 cut(s) 627, 3207
BarI GAAGNNNNNNTAC 2 cut(s) 1407, 1439
BbsI GAAGAC 4 cut(s) 1170, 1502, 2602, 3190
Bbv12I GWGCWC 1 cut(s) 2102
BbvCI CCTCAGC 2 cut(s) 245, 3153
BbvI GCAGC 3 cut(s) 138, 176, 388
BceAI ACGGC 2 cut(s) 210, 361
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 3 cut(s) 169, 956, 2007
BciVI GTATCC 1 cut(s) 2545
BcoDI GTCTC 4 cut(s) 293, 714, 2160, 3208
BfaI CTAG 9 cut(s) 71, 1160, 1235, 1502, 1781, 1790, 1980, 2180, 2756
BfmI CTRYAG 2 cut(s) 366, 2804
BfuI GTATCC 1 cut(s) 2545
BglII AGATCT 4 cut(s) 534, 855, 1690, 2404
BisI GCNGC 3 cut(s) 127, 190, 377
BlsI GCNGC 3 cut(s) 128, 191, 378
Bme1390I CCNGG 3 cut(s) 169, 956, 2007
Bme18I GGWCC 3 cut(s) 1740, 2279, 2767
BmeT110I CYCGRG 1 cut(s) 3074
BmgT120I GGNCC 7 cut(s) 695, 1149, 1418, 1740, 2279, 2767, 2936
BmiI GGNNCC 4 cut(s) 629, 916, 1150, 3209
BmrFI CCNGG 3 cut(s) 169, 956, 2007
BmrI ACTGGG 1 cut(s) 1225
BmsI GCATC 2 cut(s) 313, 2476
BmuI ACTGGG 1 cut(s) 1225
BpiI GAAGAC 4 cut(s) 1170, 1502, 2602, 3190
BpmI CTGGAG 1 cut(s) 753
Bpu10I CCTNAGC 2 cut(s) 245, 3153
BpuEI CTTGAG 8 cut(s) 160, 551, 1660, 1681, 1888, 2054, 2083, 2806
BsaAI YACGTR 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 1317
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 2005, 2257
BsaWI WCCGGW 1 cut(s) 3210
Bsc4I CCNNNNNNNGG 7 cut(s) 232, 614, 660, 938, 1505, 1711, 3005
Bse1I ACTGG 3 cut(s) 770, 1220, 1733
Bse21I CCTNAGG 1 cut(s) 659
Bse3DI GCAATG 2 cut(s) 107, 2472
Bse8I GATNNNNATC 1 cut(s) 1317
BseBI CCWGG 3 cut(s) 169, 956, 2007
BseDI CCNNGG 2 cut(s) 2005, 2257
BseGI GGATG 6 cut(s) 63, 806, 1110, 1370, 2001, 2995
BseJI GATNNNNATC 1 cut(s) 1317
BseLI CCNNNNNNNGG 7 cut(s) 232, 614, 660, 938, 1505, 1711, 3005
BseMI GCAATG 2 cut(s) 107, 2472
BseMII CTCAG 7 cut(s) 259, 276, 673, 1279, 1511, 1619, 3167
BseNI ACTGG 3 cut(s) 770, 1220, 1733
BseSI GKGCMC 1 cut(s) 2237
BseXI GCAGC 3 cut(s) 138, 176, 388
BshFI GGCC 7 cut(s) 225, 696, 1151, 1389, 1420, 2386, 2938
BshNI GGYRCC 2 cut(s) 627, 3207
BsiHKAI GWGCWC 1 cut(s) 2102
BsiHKCI CYCGRG 1 cut(s) 3074
BsiSI CCGG 1 cut(s) 3211
BslFI GGGAC 2 cut(s) 982, 2349
BslI CCNNNNNNNGG 7 cut(s) 232, 614, 660, 938, 1505, 1711, 3005
BsmAI GTCTC 4 cut(s) 293, 714, 2160, 3208
BsmFI GGGAC 2 cut(s) 982, 2349
BsmI GAATGC 2 cut(s) 779, 3132
BsnI GGCC 7 cut(s) 225, 696, 1151, 1389, 1420, 2386, 2938
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 3074
Bsp1286I GDGCHC 2 cut(s) 2102, 2237
Bsp1407I TGTACA 1 cut(s) 3192
BspACI CCGC 3 cut(s) 285, 966, 1023
BspANI GGCC 7 cut(s) 225, 696, 1151, 1389, 1420, 2386, 2938
BspCNI CTCAG 7 cut(s) 258, 275, 672, 1278, 1512, 1618, 3166
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 4 cut(s) 629, 916, 1150, 3209
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 8 cut(s) 494, 949, 966, 1063, 2006, 2017, 2328, 2656
BspT107I GGYRCC 2 cut(s) 627, 3207
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 2 cut(s) 107, 2472
BsrGI TGTACA 1 cut(s) 3192
BsrI ACTGG 3 cut(s) 770, 1220, 1733
BssECI CCNNGG 2 cut(s) 2005, 2257
BssNAI GTATAC 1 cut(s) 2146
BssT1I CCWWGG 1 cut(s) 2257
Bst1107I GTATAC 1 cut(s) 2146
Bst2UI CCWGG 3 cut(s) 169, 956, 2007
Bst4CI ACNGT 3 cut(s) 2074, 2557, 2608
Bst6I CTCTTC 3 cut(s) 296, 951, 1302
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 3192
BstBAI YACGTR 1 cut(s) 878
BstC8I GCNNGC 2 cut(s) 1559, 2463
BstF5I GGATG 6 cut(s) 63, 806, 1110, 1370, 2001, 2995
BstMAI GTCTC 4 cut(s) 293, 714, 2160, 3208
BstMWI GCNNNNNNNGC 2 cut(s) 785, 2471
BstNI CCWGG 3 cut(s) 169, 956, 2007
BstNSI RCATGY 5 cut(s) 553, 1888, 2152, 3057, 3191
BstSCI CCNGG 3 cut(s) 167, 954, 2005
BstSFI CTRYAG 2 cut(s) 366, 2804
BstSLI GKGCMC 1 cut(s) 2237
BstV1I GCAGC 3 cut(s) 138, 176, 388
BstV2I GAAGAC 4 cut(s) 1170, 1502, 2602, 3190
BstX2I RGATCY 6 cut(s) 534, 855, 941, 958, 1690, 2404
BstXI CCANNNNNNTGG 1 cut(s) 1340
BstYI RGATCY 6 cut(s) 534, 855, 941, 958, 1690, 2404
BstZ17I GTATAC 1 cut(s) 2146
Bsu36I CCTNAGG 1 cut(s) 659
BsuI GTATCC 1 cut(s) 2545
BsuRI GGCC 7 cut(s) 225, 696, 1151, 1389, 1420, 2386, 2938
BtsCI GGATG 6 cut(s) 63, 806, 1110, 1370, 2001, 2995
BtsI GCAGTG 2 cut(s) 256, 2080
BtsIMutI CAGTG 6 cut(s) 256, 1150, 1273, 1492, 2080, 2194
Cac8I GCNNGC 2 cut(s) 1559, 2463
CaiI CAGNNNCTG 1 cut(s) 2251
CciI TCATGA 1 cut(s) 381
Cfr13I GGNCC 7 cut(s) 695, 1149, 1418, 1740, 2279, 2767, 2936
Csp6I GTAC 5 cut(s) 180, 2075, 2111, 3193, 3208
CspCI CAANNNNNGTGG 2 cut(s) 2407, 2442
CviQI GTAC 5 cut(s) 180, 2075, 2111, 3193, 3208
EaeI YGGCCR 2 cut(s) 223, 2384
Eam1104I CTCTTC 3 cut(s) 296, 951, 1302
EarI CTCTTC 3 cut(s) 296, 951, 1302
Eco130I CCWWGG 1 cut(s) 2257
Eco147I AGGCCT 1 cut(s) 1389
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 3 cut(s) 1740, 2279, 2767
Eco57I CTGAAG 3 cut(s) 284, 1900, 2970
Eco81I CCTNAGG 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 3074
EcoO109I RGGNCCY 1 cut(s) 695
EcoRII CCWGG 3 cut(s) 167, 954, 2005
EcoT14I CCWWGG 1 cut(s) 2257
ErhI CCWWGG 1 cut(s) 2257
FaqI GGGAC 2 cut(s) 982, 2349
FauI CCCGC 1 cut(s) 959
FblI GTMKAC 1 cut(s) 2145
Fnu4HI GCNGC 3 cut(s) 127, 190, 377
FokI GGATG 6 cut(s) 50, 793, 1117, 1357, 1988, 2982
Fsp4HI GCNGC 3 cut(s) 127, 190, 377
FspBI CTAG 9 cut(s) 71, 1160, 1235, 1502, 1781, 1790, 1980, 2180, 2756
GluI GCNGC 3 cut(s) 127, 190, 377
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 7 cut(s) 225, 696, 1151, 1389, 1420, 2386, 2938
HapII CCGG 1 cut(s) 3211
HindIII AAGCTT 2 cut(s) 158, 1847
HpaII CCGG 1 cut(s) 3211
HphI GGTGA 4 cut(s) 1869, 2498, 2605, 3212
Hpy166II GTNNAC 2 cut(s) 2146, 3193
Hpy8I GTNNAC 2 cut(s) 2146, 3193
HpyCH4III ACNGT 3 cut(s) 2074, 2557, 2608
HpyCH4IV ACGT 1 cut(s) 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 785, 2471
HpySE526I ACGT 1 cut(s) 877
KpnI GGTACC 1 cut(s) 3211
LmnI GCTCC 2 cut(s) 772, 2587
Lsp1109I GCAGC 3 cut(s) 138, 176, 388
LweI GCATC 2 cut(s) 313, 2476
MaeI CTAG 9 cut(s) 71, 1160, 1235, 1502, 1781, 1790, 1980, 2180, 2756
MaeII ACGT 1 cut(s) 877
MfeI CAATTG 3 cut(s) 1088, 2161, 2855
MflI RGATCY 6 cut(s) 534, 855, 941, 958, 1690, 2404
MhlI GDGCHC 2 cut(s) 2102, 2237
MlsI TGGCCA 1 cut(s) 2386
MluNI TGGCCA 1 cut(s) 2386
MlyI GAGTC 3 cut(s) 716, 2758, 2768
MmeI TCCRAC 4 cut(s) 181, 1866, 2915, 3002
Mox20I TGGCCA 1 cut(s) 2386
MroXI GAANNNNTTC 2 cut(s) 1528, 1913
MscI TGGCCA 1 cut(s) 2386
MseI TTAA 9 cut(s) 702, 1203, 1440, 1634, 2115, 2120, 2373, 2603, 2738
MslI CAYNNNNRTG 3 cut(s) 1817, 2287, 3137
Msp20I TGGCCA 1 cut(s) 2386
MspA1I CMGCKG 2 cut(s) 285, 3157
MspI CCGG 1 cut(s) 3211
MspR9I CCNGG 3 cut(s) 169, 956, 2007
MunI CAATTG 3 cut(s) 1088, 2161, 2855
Mva1269I GAATGC 2 cut(s) 779, 3132
MvaI CCWGG 3 cut(s) 169, 956, 2007
MwoI GCNNNNNNNGC 2 cut(s) 785, 2471
NlaIV GGNNCC 4 cut(s) 629, 916, 1150, 3209
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 4 cut(s) 34, 1875, 2844, 3078
NspI RCATGY 5 cut(s) 553, 1888, 2152, 3057, 3191
PagI TCATGA 1 cut(s) 381
PceI AGGCCT 1 cut(s) 1389
PciI ACATGT 3 cut(s) 2148, 3053, 3187
PctI GAATGC 2 cut(s) 779, 3132
PdmI GAANNNNTTC 2 cut(s) 1528, 1913
PflFI GACNNNGTC 1 cut(s) 1169
PflMI CCANNNNNTGG 2 cut(s) 938, 3005
PkrI GCNGC 3 cut(s) 128, 191, 378
PleI GAGTC 3 cut(s) 715, 2757, 2767
PpsI GAGTC 3 cut(s) 715, 2757, 2767
Ppu21I YACGTR 1 cut(s) 878
PscI ACATGT 3 cut(s) 2148, 3053, 3187
PshBI ATTAAT 2 cut(s) 1203, 2373
Psp6I CCWGG 3 cut(s) 167, 954, 2005
PspGI CCWGG 3 cut(s) 167, 954, 2005
PspN4I GGNNCC 4 cut(s) 629, 916, 1150, 3209
PspPI GGNCC 7 cut(s) 695, 1149, 1418, 1740, 2279, 2767, 2936
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 2251
PsuI RGATCY 6 cut(s) 534, 855, 941, 958, 1690, 2404
PsyI GACNNNGTC 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 3157
RsaI GTAC 5 cut(s) 181, 2076, 2112, 3194, 3209
RsaNI GTAC 5 cut(s) 180, 2075, 2111, 3193, 3208
RseI CAYNNNNRTG 3 cut(s) 1817, 2287, 3137
SaqAI TTAA 9 cut(s) 702, 1203, 1440, 1634, 2115, 2120, 2373, 2603, 2738
SatI GCNGC 3 cut(s) 127, 190, 377
Sau96I GGNCC 7 cut(s) 695, 1149, 1418, 1740, 2279, 2767, 2936
SchI GAGTC 3 cut(s) 716, 2758, 2768
ScrFI CCNGG 3 cut(s) 169, 956, 2007
SduI GDGCHC 2 cut(s) 2102, 2237
SfaNI GCATC 2 cut(s) 313, 2476
SfcI CTRYAG 2 cut(s) 366, 2804
SinI GGWCC 3 cut(s) 1740, 2279, 2767
SmiMI CAYNNNNRTG 3 cut(s) 1817, 2287, 3137
SmlI CTYRAG 8 cut(s) 175, 530, 1639, 1660, 1903, 2033, 2062, 2785
SmoI CTYRAG 8 cut(s) 175, 530, 1639, 1660, 1903, 2033, 2062, 2785
SseBI AGGCCT 1 cut(s) 1389
SsiI CCGC 3 cut(s) 285, 966, 1023
SspI AATATT 2 cut(s) 1201, 1276
SspMI CTAG 9 cut(s) 71, 1160, 1235, 1502, 1781, 1790, 1980, 2180, 2756
StuI AGGCCT 1 cut(s) 1389
StyD4I CCNGG 3 cut(s) 167, 954, 2005
StyI CCWWGG 1 cut(s) 2257
TaaI ACNGT 3 cut(s) 2074, 2557, 2608
TaiI ACGT 1 cut(s) 880
TaqI TCGA 4 cut(s) 114, 1245, 2580, 2618
TatI WGTACW 1 cut(s) 3192
Tru1I TTAA 9 cut(s) 702, 1203, 1440, 1634, 2115, 2120, 2373, 2603, 2738
Tru9I TTAA 9 cut(s) 702, 1203, 1440, 1634, 2115, 2120, 2373, 2603, 2738
TscAI CASTG 6 cut(s) 256, 1150, 1273, 1492, 2087, 2194
TseFI GTSAC 4 cut(s) 34, 1875, 2844, 3078
TseI GCWGC 3 cut(s) 126, 189, 376
Tsp45I GTSAC 4 cut(s) 34, 1875, 2844, 3078
TspGWI ACGGA 3 cut(s) 724, 1125, 2661
TspRI CASTG 6 cut(s) 256, 1150, 1273, 1492, 2087, 2194
Tth111I GACNNNGTC 1 cut(s) 1169
Van91I CCANNNNNTGG 2 cut(s) 938, 3005
VpaK11BI GGWCC 3 cut(s) 1740, 2279, 2767
VspI ATTAAT 2 cut(s) 1203, 2373
XapI RAATTY 7 cut(s) 385, 400, 541, 926, 1356, 2342, 2796
XbaI TCTAGA 5 cut(s) 1159, 1501, 1780, 1789, 2179
XceI RCATGY 5 cut(s) 553, 1888, 2152, 3057, 3191
XcmI CCANNNNNNNNNTGG 1 cut(s) 3002
XmiI GTMKAC 1 cut(s) 2145
XmnI GAANNNNTTC 2 cut(s) 1528, 1913
XspI CTAG 9 cut(s) 71, 1160, 1235, 1502, 1781, 1790, 1980, 2180, 2756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.