MD08G1062000.v1.1

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000047
Physical Location & Seq
Reverse (-)
4909398 .. 4912466
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1062000.v1.1.491

Sequence Viewer

Length: 3069 bp
ATGAAACTTTTGCTCATTTCCTTTATGTTCTTGATCGGGACTGTTACTCCAGCCGAAAGCAAGTGCAATGAAGATGACCAGTCATCGTTGCTCCGCTTAAAGCAAAGCCTTAACTTCAATAATTTTGCTTCCACCAAGCTTGTTACTTGGAATGCAAGTATCGACTGCTGTTCTTGGGTCGGAGTAAATTGCAGTGCTAATGGCTATGCAGTTGGTCTGGACCTCAGCAAGGAACGGATCCTAAGTGGGATTGACGACTCCAGCAGTCTTTTTGATCTTCAACATCTTCAAAGCCTCAACTTTGCTGATAACGGTTATCACCACTCTCAAATACCATCTTCTATCGGAAAGCTTGCAAAGTTGAGGTATCTGAATCTATCCCATAATGGTTTTTTGGGGCAAATCCCAATTGAGATTTCGCACTTGACAAGGTTGATTGTTCTTGATCTTTCTGAAACTAACTTAAAACTTGAGAACCCCAATTTAAGCATGCTGATTCAGAATCTCACAGAGCTTGAAGTATTATATCTTGATTCGGTAAACATATCAAGAAAAAGGAGTGACTGGTGTCAAGTAATATCTTCTTCACTTCCAAAGCTGAGGGTGCTGAGCTTGTCCAGCACTGGTCTTCTGGGACCTATTGATGACTCCCTTGCCAAGCTTTCATCTCTATCCGTGATTCGATTGGATTATAACAACATATCTTCTCCGGTTCCATCATTCTTCGCCAATTTTTCGAACTTGACTTCCTTGATTCTCCATAAATGTCAGTTGTATGGAACATTTCCCCAAGAAATCTTCCAGATATCTACACTACAGCATATTGACTTGTCCTCCAATCGGCTGCTTCAAGGTTCCTTGCCAGAATTTCCGAACACTGGATCTCTTCAAACTCTGGAATTGAGCTACACAAGTTTTTCGGGGTTATTGCTGGACTCTATTGGCAACCTCAAAATGTTGTCCGTGATAGATCTCTCAACCTGCAATTTCTATGGATCAATCCCAAAGTCAATGGAAAATCTCAGACACTTGTATTATTTAGACATGTCAGACAACAAGTTCAGCGGTTCCATTAATTCCACTCATTGGGAAAACCTTGTCGAGTTGAAGGATGTTGACTTGAGTTACAACCTGCTTGTTGGAGGCATTCCATTATCTATGTTTTCTCTTCCCCTGCTGCAAACATTATACCTTTCCAACAATAAGTTCTCGCATCAGTTCCATGAGTTCTCTAACGTCTCTTCTTCTAACCAATTAAGCTCCTTGTGTTTGGATTTCAACAATCTCGAAGGGCCAGTACCGATGTCTATTTTTAGTTTGAGAGGTCTTGAGTATCTTTCACTTTCTTCAAACAACTTGGAAGGCTCGTTTCCTCTAAGTGGTCTTCAGAAGCTGAGAAATCTGACTTTTCTTAATCTTTCAAACACCAGCTTGTTCATTGATCATACCGGTACCAATTCCTCATATTCATCCTTGCCTCAATTGGATACAGTGATTTTAAGTTCTACCAAGTTGAGAACATATCCTGATTTCTTGAGATATCTACCCAATTTACACACCTTGGATCTTGCACAAAATCAAATTCATGGAGAGATACCAAACTGGATTTGGGGGCTCAAATTGGTTAGTTATCTAAATATTTCATGCAACTCCTTGGCAAGTTTTGGTCCTTTACCCAATCTCACTTCTGCTCTACGGCTGCTCGACCTTCACTCTAACCAGCTTCAAGGGCAAATCCCAGTTTTCTCAGCACCTACAATGCAATTTTTGGATTACTCCAGAAATAATTTGAGCTCTGGCATACCGACTAACATTGGTGAGTTCTTGACGACCACCAAATTCTTCTCACTTTCAAGCAATAACCTCCACGGCATCATTCCGAGATCGTTGTGCAATCTGTCAACTCTTGAGATTCTTGATCTGTCCAATAATTCACTTAGTGGTATAATTCCTGAGTGCTTGACTACAATGAAGACGCTTGCAGTGCTTAATTTACGGAGAAACAACCTTACAGACAACATTTCTTACAAATTTGATGAGCATTGCAGTTTAGAAACTCTAGACCTCAGTGGAAATCAAATCAAAGGCCGGCTTCCAGAATCTTTAGTCAGCTGCACAAAATTAGTGGTATTAAACCTTGGATACAATCAGATAATGGATACTTTTCCCTGCTATTTGAAGAGTGTTTCCACCTTGCGAGTCCTTGTTCTCCGATCCAATAAATTCTACGGAGGCATTGGATGTCCGAGTACCAATGGCACCTGGCCAGTGCTTCAAATCATAGATGTAGCTCACAACAATTTCAATGGCGAATTACCTGGAGGATTGTTGACAACATGGAAAGCTATGATGGACAACAAAGCTGATGCAAATCACCTTCAGTATTTGTACAGATTCTATCCTGGTATTTACTATCAGAACTCGGTAACAATTGTGAGCAAAGATTTGACGATGGACCTGGCAAAGATTCTAACTATCTTCACCGCAGTTGACTTTTCTGGCAACAAATTCCATGGACAAATACCTGAAGAAATTGGAGAACTCAAATCATTGTATATTCTCAACTTCTCCAACAATGCTTTCACAGGTAAAATCCCATCATCGTTGATTAACTTGGGAAACCTCGAGTCTTTAGATCTCTCAGTGAACAACCTGAATGGGCAGATTCCACCAGAATTTTCAAAACTCCATTTCCTTGCATTCATGAACCTCTCAACCAATCACTTGGTTGGCAAGATCCCAAGCAGCACTCAGTTTTCAACATTTCCAAAATCTTCCTTCGAAGGGAACACGGATTTATGGGGGCCTCCTTTGACAGCATATGACAGACCACCGATGTCGTTGCCACCAATGTCAAATGGAAGTGATCCGAATTCTGGCAGTGAGATTAATTGGGACATTCTAAGTGTTGAAATTGGATATTTTGTCGGCCTTGGAGTCGTCATCGGGCCACTCGTGTTTTGCGAGGGATGGAGGAACTGGTATTACGAAGCTGTGGAGAACATGTTCTTTAAGATGCTCCCTCATCTGGACAAAAGAAATGGTAATCGGATTCGTGGAAGACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

1023

Amino Acids

113.81

Weight (kDa)

5.92

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 24 - 65 1.5e-07 Leucine rich repeat N-terminal domain
LRR_14 PF23598 347 - 579 2.8e-08 Leucine-rich repeat region
LRR_8 PF13855 493 - 552 2.6e-06 Leucine rich repeat
LRR_8 PF13855 616 - 670 4.9e-08 Leucine rich repeat
LRR_8 PF13855 660 - 718 3e-06 Leucine rich repeat
LRR_4 PF12799 683 - 720 5.3e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13590 FvH4_6g10800 FvH4_6g11080 FvH4_6g11081 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g11660 FvH4_6g21370 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21371 FvH4_6g21373 FvH4_6g21374 FvH4_6g21375 FvH4_6g21378 FvH4_7g13570
malus_domestica MD00G1166300.v1.1 MD04G1159400.v1.1 MD04G1159500.v1.1 MD04G1159700.v1.1 MD04G1159800.v1.1 MD04G1160600.v1.1 MD04G1160700.v1.1 MD04G1160800.v1.1 MD04G1161000.v1.1 MD04G1161100.v1.1 MD04G1161200.v1.1 MD04G1161300.v1.1 MD04G1161600.v1.1 MD04G1161700.v1.1 MD04G1210900.v1.1 MD05G1095100.v1.1 MD05G1095300.v1.1 MD05G1095400.v1.1 MD05G1095600.v1.1 MD08G1062000.v1.1 MD08G1062100.v1.1 MD12G1152900.v1.1 MD12G1153300.v1.1 MD12G1172900.v1.1 MD12G1173400.v1.1 MD12G1173600.v1.1 MD12G1173700.v1.1 MD12G1173800.v1.1 MD12G1174000.v1.1 MD12G1174100.v1.1 MD12G1174400.v1.1 MD12G1175000.v1.1
prunus_persica Prupe.6G281000_v2.0.a1 Prupe.6G281100_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281200_v2.0.a1 Prupe.6G281300_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281400_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G281500_v2.0.a1 Prupe.6G288800_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.7G088700_v2.0.a1 Prupe.8G054300_v2.0.a1 Prupe.8G054400_v2.0.a1
pyrus_communis pycom04g14110 pycom04g14120 pycom04g14130 pycom04g14180 pycom04g14390 pycom04g14410 pycom04g14420 pycom04g14430 pycom04g14450 pycom04g14460 pycom12g14600 pycom12g14610 pycom12g16390 pycom12g16430 pycom12g16460 pycom12g16470 pycom12g16480 pycom12g16490 pycom12g16580 pycom12g16600
rosa_chinensis RchiOBHm_Chr0c32g0501501 RchiOBHm_Chr0c32g0501511 RchiOBHm_Chr0c32g0501521 RchiOBHm_Chr0c39g0503191 RchiOBHm_Chr0c39g0503201 RchiOBHm_Chr0c39g0503231 RchiOBHm_Chr0c39g0503261 RchiOBHm_Chr0c39g0503271 RchiOBHm_Chr0c39g0503311 RchiOBHm_Chr0c39g0503331 RchiOBHm_Chr1g0316151 RchiOBHm_Chr1g0316251 RchiOBHm_Chr1g0316291 RchiOBHm_Chr1g0351861 RchiOBHm_Chr1g0351911 RchiOBHm_Chr1g0353121 RchiOBHm_Chr1g0353151 RchiOBHm_Chr1g0353161 RchiOBHm_Chr1g0353221 RchiOBHm_Chr1g0353251 RchiOBHm_Chr1g0353271 RchiOBHm_Chr1g0353291 RchiOBHm_Chr1g0353341 RchiOBHm_Chr3g0451491 RchiOBHm_Chr3g0461851 RchiOBHm_Chr3g0461931 RchiOBHm_Chr3g0462001 RchiOBHm_Chr3g0462441 RchiOBHm_Chr3g0462461 RchiOBHm_Chr3g0462511 RchiOBHm_Chr3g0463331 RchiOBHm_Chr3g0463341 RchiOBHm_Chr3g0463351 RchiOBHm_Chr3g0477991 RchiOBHm_Chr3g0478021 RchiOBHm_Chr3g0478031 RchiOBHm_Chr3g0478051 RchiOBHm_Chr3g0478091 RchiOBHm_Chr3g0478101 RchiOBHm_Chr3g0478141 RchiOBHm_Chr3g0478161 RchiOBHm_Chr3g0478181 RchiOBHm_Chr3g0478191 RchiOBHm_Chr3g0478311 RchiOBHm_Chr3g0478331 RchiOBHm_Chr3g0478381 RchiOBHm_Chr3g0478431 RchiOBHm_Chr3g0478451 RchiOBHm_Chr3g0478491 RchiOBHm_Chr3g0478511 RchiOBHm_Chr3g0478551 RchiOBHm_Chr3g0478561 RchiOBHm_Chr3g0478581 RchiOBHm_Chr3g0478601 RchiOBHm_Chr3g0481181 RchiOBHm_Chr3g0483751 RchiOBHm_Chr3g0483761 RchiOBHm_Chr3g0483771 RchiOBHm_Chr3g0483781 RchiOBHm_Chr5g0037311 RchiOBHm_Chr5g0039781 RchiOBHm_Chr5g0039851 RchiOBHm_Chr5g0048141 RchiOBHm_Chr6g0257231
rosa_laevigata RLG00000008156 RLG00000019550 RLG00000019551 RLG00000022912 RLG00000022914 RLG00000023271 RLG00000023639 RLG00000023640 RLG00000023644 RLG00000023646 RLG00000023648 RLG00000023650 RLG00000023654 RLG00000023658 RLG00000023660 RLG00000023661 RLG00000023662 RLG00000023664 RLG00000023666 RLG00000023670 RLG00000023671 RLG00000023672 RLG00000023673 RLG00000023882 RLG00000024789 RLG00000024854 RLG00000024855 RLG00000024856 RLG00000024859 RLG00000024860 RLG00000024886 RLG00000024891 RLG00000024892 RLG00000024972 RLG00000028274 RLG00000028275 RLG00000028277 RLG00000028279 RLG00000028281 RLG00000028283 RLG00000028285 RLG00000028287 RLG00000028376 RLG00000030078 RLG00000030682 RLG00000030690 RLG00000033943 RLG00000033946
rosa_multiflora Rmu_co8376673.1_g000001 Rmu_sc0000103.1_g000026 Rmu_sc0000295.1_g000035 Rmu_sc0000923.1_g000003 Rmu_sc0000923.1_g000005 Rmu_sc0001207.1_g000038 Rmu_sc0001207.1_g000054 Rmu_sc0001207.1_g000059 Rmu_sc0001207.1_g000069 Rmu_sc0001207.1_g000073 Rmu_sc0001207.1_g000080 Rmu_sc0001218.1_g000002 Rmu_sc0001218.1_g000019 Rmu_sc0001218.1_g000039 Rmu_sc0001218.1_g000041 Rmu_sc0001218.1_g000042 Rmu_sc0001218.1_g000047 Rmu_sc0001228.1_g000001 Rmu_sc0001333.1_g000006 Rmu_sc0001431.1_g000002 Rmu_sc0001431.1_g000003 Rmu_sc0001487.1_g000001 Rmu_sc0001518.1_g000007 Rmu_sc0001518.1_g000008 Rmu_sc0001933.1_g000003 Rmu_sc0002151.1_g000010 Rmu_sc0002151.1_g000011 Rmu_sc0002531.1_g000014 Rmu_sc0002531.1_g000017 Rmu_sc0003078.1_g000003 Rmu_sc0003078.1_g000006 Rmu_sc0003078.1_g000013 Rmu_sc0003078.1_g000018 Rmu_sc0003078.1_g000020 Rmu_sc0003326.1_g000001 Rmu_sc0003624.1_g000002 Rmu_sc0003624.1_g000010 Rmu_sc0003624.1_g000011 Rmu_sc0003624.1_g000013 Rmu_sc0003624.1_g000014 Rmu_sc0003850.1_g000006 Rmu_sc0003850.1_g000007 Rmu_sc0004308.1_g000017 Rmu_sc0004308.1_g000020 Rmu_sc0004308.1_g000025 Rmu_sc0004778.1_g000001 Rmu_sc0004888.1_g000006 Rmu_sc0005196.1_g000010 Rmu_sc0005196.1_g000011 Rmu_sc0005313.1_g000001 Rmu_sc0005657.1_g000033 Rmu_sc0005657.1_g000044 Rmu_sc0005657.1_g000052 Rmu_sc0005657.1_g000054 Rmu_sc0005657.1_g000059 Rmu_sc0005657.1_g000064 Rmu_sc0005657.1_g000071 Rmu_sc0005767.1_g000001 Rmu_sc0005767.1_g000005 Rmu_sc0005767.1_g000007 Rmu_sc0005767.1_g000023 Rmu_sc0006119.1_g000004 Rmu_sc0006539.1_g000002 Rmu_sc0006651.1_g000017 Rmu_sc0006651.1_g000021 Rmu_sc0006651.1_g000022 Rmu_sc0007105.1_g000001 Rmu_sc0007641.1_g000001 Rmu_sc0007641.1_g000006 Rmu_sc0007728.1_g000003 Rmu_sc0007777.1_g000005 Rmu_sc0007777.1_g000008 Rmu_sc0007777.1_g000010 Rmu_sc0007777.1_g000019 Rmu_sc0007777.1_g000020 Rmu_sc0007777.1_g000022 Rmu_sc0008105.1_g000002 Rmu_sc0008340.1_g000002 Rmu_sc0008559.1_g000005 Rmu_sc0008560.1_g000002 Rmu_sc0008866.1_g000005 Rmu_sc0011028.1_g000006 Rmu_sc0011028.1_g000009 Rmu_sc0011346.1_g000003 Rmu_sc0011346.1_g000004 Rmu_sc0011346.1_g000012 Rmu_sc0011461.1_g000002 Rmu_sc0013048.1_g000001 Rmu_sc0015960.1_g000001 Rmu_sc0026214.1_g000001
rosa_roxburghii Rroxscaffold_1G00041310 Rroxscaffold_1G00041400 Rroxscaffold_1G00041410 Rroxscaffold_4G00301900 Rroxscaffold_4G00301910 Rroxscaffold_4G00301970 Rroxscaffold_4G00301990 Rroxscaffold_4G00302010 Rroxscaffold_4G00302030 Rroxscaffold_4G00303460 Rroxscaffold_6G00403270 Rroxscaffold_6G00403300 Rroxscaffold_6G00403320 Rroxscaffold_6G00403330 Rroxscaffold_6G00403370 Rroxscaffold_6G00403380 Rroxscaffold_6G00403410 Rroxscaffold_6G00403420 Rroxscaffold_6G00403430 Rroxscaffold_6G00403480 Rroxscaffold_6G00403540 Rroxscaffold_6G00406750 Rroxscaffold_6G00416600 Rroxscaffold_6G00416620 Rroxscaffold_6G00416630 Rroxscaffold_6G00416640 Rroxscaffold_6G00417470 Rroxscaffold_6G00417510 Rroxscaffold_6G00417810 Rroxscaffold_6G00417860 Rroxscaffold_6G00419140
rosa_rugosa Rorug01G0009600 Rorug01G0222400 Rorug01G0222700 Rorug01G0222900 Rorug01G0233900 Rorug01G0234100 Rorug01G0234200 Rorug01G0234400 Rorug01G0235200 Rorug03G0054200 Rorug03G0056600 Rorug03G0056700 Rorug03G0056800 Rorug03G0056900 Rorug03G0057200 Rorug03G0064100 Rorug03G0064100 Rorug03G0064200 Rorug03G0165200 Rorug03G0165300 Rorug03G0165300 Rorug03G0165500 Rorug03G0165500 Rorug03G0165600 Rorug03G0165700 Rorug03G0165900 Rorug03G0166000 Rorug03G0166200 Rorug03G0166300 Rorug03G0166400 Rorug03G0166500 Rorug03G0166700 Rorug04G0127000 Rorug05G0182500 Rorug05G0182900 Rorug05G0183000
rosa_samantha Rh1DG234000 Rh1DG243600 Rh1DG243700 Rh2AG645000 Rh3AG115000 Rh3BG118400 Rh3CG121200 Rh3CG121300 Rh3CG121700 Rh3CG121800 Rh3CG121900 Rh3CG128300 Rh3CG128500 Rh3CG243700 Rh3CG244200 Rh3CG244500 Rh3CG246000 Rh3CG246300 Rh3CG246400 Rh3CG246500 Rh3CG247000 Rh3DG120400 Rh4DG032600 Rh5AG319500 Rh5DG280900 Rh5DG337500 Rh6CG079500
rosa_wichuraiana Rw0G003790 Rw0G006960 Rw0G010120 Rw0G018070 Rw1G001290 Rw1G020570 Rw1G020590 Rw1G021380 Rw1G021390 Rw1G021440 Rw1G021540 Rw2G052980 Rw3G009520 Rw3G009740 Rw3G010350 Rw3G019410 Rw3G019560 Rw3G019590 Rw3G019600 Rw3G019610 Rw3G019620 Rw3G019630 Rw3G019650 Rw4G015840 Rw5G025130 Rw5G025840 Rw6G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
Acc36I ACCTGC 2 cut(s) 989, 1140
Acc65I GGTACC 1 cut(s) 1451
AccB1I GGYRCC 2 cut(s) 1451, 2258
AccB7I CCANNNNNTGG 1 cut(s) 1086
AciI CCGC 3 cut(s) 94, 1065, 2484
AclWI GGATC 8 cut(s) 232, 245, 889, 1003, 1572, 2208, 2731, 2861
AcoI YGGCCR 1 cut(s) 2264
AcsI RAATTY 8 cut(s) 866, 1581, 1838, 2030, 2222, 2507, 2675, 2872
AcuI CTGAAG 3 cut(s) 1370, 2363, 2547
AdeI CACNNNGTG 1 cut(s) 1940
AfaI GTAC 4 cut(s) 1299, 1453, 2251, 2390
AfiI CCNNNNNNNGG 8 cut(s) 229, 840, 878, 1086, 1379, 2784, 2876, 3028
AflIII ACRYGT 2 cut(s) 1044, 3003
AgeI ACCGGT 1 cut(s) 1448
AjnI CCWGG 4 cut(s) 2261, 2317, 2401, 2457
AjuI GAANNNNNNNTTGG 6 cut(s) 400, 432, 1190, 1222, 2564, 2596
AloI GAACNNNNNNTCC 4 cut(s) 731, 763, 2990, 3022
Alw21I GWGCWC 1 cut(s) 1796
Alw26I GTCTC 1 cut(s) 1243
AlwI GGATC 8 cut(s) 232, 245, 889, 1003, 1572, 2208, 2731, 2861
AlwNI CAGNNNCTG 1 cut(s) 1393
Ama87I CYCGRG 1 cut(s) 2624
AoxI GGCC 6 cut(s) 1292, 2086, 2264, 2804, 2929, 2948
ApeKI GCWGC 5 cut(s) 844, 1177, 1699, 2112, 2745
ApoI RAATTY 8 cut(s) 866, 1581, 1838, 2030, 2222, 2507, 2675, 2872
AseI ATTAAT 2 cut(s) 1074, 2889
AsiGI ACCGGT 1 cut(s) 1448
Asp700I GAANNNNTTC 1 cut(s) 3005
Asp718I GGTACC 1 cut(s) 1451
AspS9I GGNCC 7 cut(s) 220, 635, 1292, 1667, 2455, 2804, 2948
AsuHPI GGTGA 4 cut(s) 311, 1829, 2366, 2473
AsuII TTCGAA 2 cut(s) 737, 2781
AvaI CYCGRG 1 cut(s) 2624
AvaII GGWCC 4 cut(s) 220, 635, 1667, 2455
BalI TGGCCA 1 cut(s) 2266
BamHI GGATCC 1 cut(s) 237
BanI GGYRCC 2 cut(s) 1451, 2258
BanII GRGCYC 2 cut(s) 1617, 1796
BarI GAAGNNNNNNTAC 2 cut(s) 1281, 1313
BauI CACGAG 1 cut(s) 2954
BbsI GAAGAC 3 cut(s) 620, 1376, 1979
Bbv12I GWGCWC 1 cut(s) 1796
BbvCI CCTCAGC 2 cut(s) 224, 599
BbvI GCAGC 5 cut(s) 831, 1164, 1686, 2099, 2757
BccI CCATC 6 cut(s) 343, 724, 2344, 2446, 2605, 2964
BceAI ACGGC 2 cut(s) 1712, 1885
BcgI CGANNNNNNTGC 2 cut(s) 2824, 2858
BciT130I CCWGG 4 cut(s) 2263, 2319, 2403, 2459
BciVI GTATCC 3 cut(s) 1480, 2135, 2152
BclI TGATCA 1 cut(s) 1441
BcoDI GTCTC 1 cut(s) 1243
BfaI CTAG 1 cut(s) 2060
BfmI CTRYAG 1 cut(s) 815
BfuAI ACCTGC 2 cut(s) 989, 1140
BfuI GTATCC 3 cut(s) 1480, 2135, 2152
BglII AGATCT 2 cut(s) 970, 2635
BisI GCNGC 5 cut(s) 845, 1178, 1700, 2113, 2746
BlpI GCTNAGC 1 cut(s) 608
BlsI GCNGC 5 cut(s) 846, 1179, 1701, 2114, 2747
Bme1390I CCNGG 4 cut(s) 2263, 2319, 2403, 2459
Bme18I GGWCC 4 cut(s) 220, 635, 1667, 2455
BmeT110I CYCGRG 1 cut(s) 2624
BmgT120I GGNCC 7 cut(s) 220, 635, 1292, 1667, 2455, 2804, 2948
BmiI GGNNCC 8 cut(s) 239, 636, 714, 856, 1069, 1453, 2260, 2805
BmrFI CCNGG 4 cut(s) 2263, 2319, 2403, 2459
BmrI ACTGGG 1 cut(s) 1733
BmsI GCATC 4 cut(s) 1222, 1881, 2356, 3006
BmuI ACTGGG 1 cut(s) 1733
BoxI GACNNNNGTC 1 cut(s) 567
BpiI GAAGAC 3 cut(s) 620, 1376, 1979
BpmI CTGGAG 4 cut(s) 33, 244, 1762, 2340
Bpu10I CCTNAGC 2 cut(s) 224, 599
Bpu1102I GCTNAGC 1 cut(s) 608
Bpu14I TTCGAA 2 cut(s) 737, 2781
BpuEI CTTGAG 5 cut(s) 491, 1141, 1349, 1555, 1928
BsaBI GATNNNNATC 1 cut(s) 2370
BsaJI CCNNGG 6 cut(s) 1560, 1653, 1867, 2137, 2512, 2932
BsaWI WCCGGW 2 cut(s) 709, 1448
BsaXI ACNNNNNCTCC 6 cut(s) 31, 61, 818, 848, 2990, 3020
Bsc4I CCNNNNNNNGG 8 cut(s) 229, 840, 878, 1086, 1379, 2784, 2876, 3028
Bse118I RCCGGY 2 cut(s) 1448, 2088
Bse1I ACTGG 9 cut(s) 79, 569, 628, 883, 1295, 1607, 1739, 2267, 2984
Bse3DI GCAATG 2 cut(s) 73, 2041
Bse8I GATNNNNATC 1 cut(s) 2370
BseBI CCWGG 4 cut(s) 2263, 2319, 2403, 2459
BseDI CCNNGG 6 cut(s) 1560, 1653, 1867, 2137, 2512, 2932
BseGI GGATG 4 cut(s) 1117, 1469, 2246, 2975
BseJI GATNNNNATC 1 cut(s) 2370
BseLI CCNNNNNNNGG 8 cut(s) 229, 840, 878, 1086, 1379, 2784, 2876, 3028
BseMI GCAATG 2 cut(s) 73, 2041
BseNI ACTGG 9 cut(s) 79, 569, 628, 883, 1295, 1607, 1739, 2267, 2984
BseXI GCAGC 5 cut(s) 831, 1164, 1686, 2099, 2757
BsgI GTGCAG 1 cut(s) 2098
BshFI GGCC 6 cut(s) 1294, 2088, 2266, 2806, 2931, 2950
BshNI GGYRCC 2 cut(s) 1451, 2258
BshTI ACCGGT 1 cut(s) 1448
BsiHKAI GWGCWC 1 cut(s) 1796
BsiHKCI CYCGRG 1 cut(s) 2624
BsiSI CCGG 3 cut(s) 710, 1449, 2089
BslFI GGGAC 3 cut(s) 52, 648, 2909
BslI CCNNNNNNNGG 8 cut(s) 229, 840, 878, 1086, 1379, 2784, 2876, 3028
BsmAI GTCTC 1 cut(s) 1243
BsmBI CGTCTC 1 cut(s) 1243
BsmFI GGGAC 3 cut(s) 52, 648, 2909
BsmI GAATGC 3 cut(s) 157, 1146, 2699
BsnI GGCC 6 cut(s) 1294, 2088, 2266, 2806, 2931, 2950
BsoBI CYCGRG 1 cut(s) 2624
Bsp119I TTCGAA 2 cut(s) 737, 2781
Bsp1286I GDGCHC 2 cut(s) 1617, 1796
Bsp1407I TGTACA 1 cut(s) 2388
Bsp1720I GCTNAGC 1 cut(s) 608
Bsp19I CCATGG 1 cut(s) 2512
BspACI CCGC 3 cut(s) 94, 1065, 2484
BspANI GGCC 6 cut(s) 1294, 2088, 2266, 2806, 2931, 2950
BspHI TCATGA 1 cut(s) 2703
BspLI GGNNCC 8 cut(s) 239, 636, 714, 856, 1069, 1453, 2260, 2805
BspMI ACCTGC 2 cut(s) 989, 1140
BspPI GGATC 8 cut(s) 232, 245, 889, 1003, 1572, 2208, 2731, 2861
BspT104I TTCGAA 2 cut(s) 737, 2781
BspT107I GGYRCC 2 cut(s) 1451, 2258
BsrDI GCAATG 2 cut(s) 73, 2041
BsrFI RCCGGY 2 cut(s) 1448, 2088
BsrGI TGTACA 1 cut(s) 2388
BsrI ACTGG 9 cut(s) 79, 569, 628, 883, 1295, 1607, 1739, 2267, 2984
BssAI RCCGGY 2 cut(s) 1448, 2088
BssECI CCNNGG 6 cut(s) 1560, 1653, 1867, 2137, 2512, 2932
BssSI CACGAG 1 cut(s) 2954
BssT1I CCWWGG 5 cut(s) 1560, 1653, 2137, 2512, 2932
Bst2BI CACGAG 1 cut(s) 2954
Bst2UI CCWGG 4 cut(s) 2263, 2319, 2403, 2459
Bst4CI ACNGT 3 cut(s) 43, 314, 1492
Bst6I CTCTTC 4 cut(s) 891, 1173, 1246, 2174
BstAUI TGTACA 1 cut(s) 2388
BstBI TTCGAA 2 cut(s) 737, 2781
BstC8I GCNNGC 4 cut(s) 354, 491, 1980, 2090
BstDSI CCRYGG 2 cut(s) 1867, 2512
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 4 cut(s) 1117, 1469, 2246, 2975
BstMAI GTCTC 1 cut(s) 1243
BstMWI GCNNNNNNNGC 4 cut(s) 604, 618, 1729, 1984
BstNI CCWGG 4 cut(s) 2263, 2319, 2403, 2459
BstNSI RCATGY 3 cut(s) 493, 1048, 3007
BstPAI GACNNNNGTC 1 cut(s) 567
BstSCI CCNGG 4 cut(s) 2261, 2317, 2401, 2457
BstSFI CTRYAG 1 cut(s) 815
BstV1I GCAGC 5 cut(s) 831, 1164, 1686, 2099, 2757
BstV2I GAAGAC 3 cut(s) 620, 1376, 1979
BstX2I RGATCY 6 cut(s) 237, 881, 970, 1564, 2635, 2736
BstXI CCANNNNNNTGG 1 cut(s) 2725
BstYI RGATCY 6 cut(s) 237, 881, 970, 1564, 2635, 2736
BsuI GTATCC 3 cut(s) 1480, 2135, 2152
BsuRI GGCC 6 cut(s) 1294, 2088, 2266, 2806, 2931, 2950
BtgI CCRYGG 2 cut(s) 1867, 2512
BtsCI GGATG 4 cut(s) 1117, 1469, 2246, 2975
BtsI GCAGTG 3 cut(s) 199, 1989, 2887
BtsIMutI CAGTG 9 cut(s) 199, 621, 876, 1497, 1989, 2074, 2274, 2649, 2887
BveI ACCTGC 2 cut(s) 989, 1140
Cac8I GCNNGC 4 cut(s) 354, 491, 1980, 2090
CaiI CAGNNNCTG 1 cut(s) 1393
CciI TCATGA 1 cut(s) 2703
Cfr10I RCCGGY 2 cut(s) 1448, 2088
Cfr13I GGNCC 7 cut(s) 220, 635, 1292, 1667, 2455, 2804, 2948
CseI GACGC 1 cut(s) 1984
Csp6I GTAC 4 cut(s) 1298, 1452, 2250, 2389
CspAI ACCGGT 1 cut(s) 1448
CspCI CAANNNNNGTGG 4 cut(s) 121, 156, 2106, 2141
CviAII CATG 9 cut(s) 490, 1045, 1223, 1586, 1644, 2337, 2513, 2704, 3004
CviQI GTAC 4 cut(s) 1298, 1452, 2250, 2389
DraIII CACNNNGTG 1 cut(s) 1940
EaeI YGGCCR 1 cut(s) 2264
Eam1104I CTCTTC 4 cut(s) 891, 1173, 1246, 2174
EarI CTCTTC 4 cut(s) 891, 1173, 1246, 2174
Ecl136II GAGCTC 1 cut(s) 1794
Eco130I CCWWGG 5 cut(s) 1560, 1653, 2137, 2512, 2932
Eco24I GRGCYC 2 cut(s) 1617, 1796
Eco32I GATATC 2 cut(s) 807, 1541
Eco47I GGWCC 4 cut(s) 220, 635, 1667, 2455
Eco53kI GAGCTC 1 cut(s) 1794
Eco57I CTGAAG 3 cut(s) 1370, 2363, 2547
Eco88I CYCGRG 1 cut(s) 2624
EcoICRI GAGCTC 1 cut(s) 1794
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 635, 2804
EcoRI GAATTC 1 cut(s) 2872
EcoRII CCWGG 4 cut(s) 2261, 2317, 2401, 2457
EcoRV GATATC 2 cut(s) 807, 1541
EcoT14I CCWWGG 5 cut(s) 1560, 1653, 2137, 2512, 2932
EcoT38I GRGCYC 2 cut(s) 1617, 1796
ErhI CCWWGG 5 cut(s) 1560, 1653, 2137, 2512, 2932
Esp3I CGTCTC 1 cut(s) 1243
FaeI CATG 9 cut(s) 493, 1048, 1226, 1589, 1647, 2340, 2516, 2707, 3007
FalI AAGNNNNNCTT 2 cut(s) 2076, 2108
FaqI GGGAC 3 cut(s) 52, 648, 2909
FatI CATG 9 cut(s) 489, 1044, 1222, 1585, 1643, 2336, 2512, 2703, 3003
FauNDI CATATG 1 cut(s) 2821
FbaI TGATCA 1 cut(s) 1441
Fnu4HI GCNGC 5 cut(s) 845, 1178, 1700, 2113, 2746
FokI GGATG 4 cut(s) 1124, 1456, 2253, 2982
FriOI GRGCYC 2 cut(s) 1617, 1796
Fsp4HI GCNGC 5 cut(s) 845, 1178, 1700, 2113, 2746
FspBI CTAG 1 cut(s) 2060
GluI GCNGC 5 cut(s) 845, 1178, 1700, 2113, 2746
GsuI CTGGAG 4 cut(s) 33, 244, 1762, 2340
HaeIII GGCC 6 cut(s) 1294, 2088, 2266, 2806, 2931, 2950
HapII CCGG 3 cut(s) 710, 1449, 2089
HgaI GACGC 1 cut(s) 1984
Hin1II CATG 9 cut(s) 493, 1048, 1226, 1589, 1647, 2340, 2516, 2707, 3007
HincII GTYRAC 4 cut(s) 1117, 1902, 2331, 2491
HindII GTYRAC 4 cut(s) 1117, 1902, 2331, 2491
HindIII AAGCTT 3 cut(s) 137, 350, 659
HpaII CCGG 3 cut(s) 710, 1449, 2089
HphI GGTGA 4 cut(s) 311, 1829, 2366, 2473
Hpy166II GTNNAC 6 cut(s) 541, 1117, 1902, 2331, 2491, 2647
Hpy8I GTNNAC 6 cut(s) 541, 1117, 1902, 2331, 2491, 2647
HpyAV CCTTC 7 cut(s) 1102, 1283, 1355, 1718, 2387, 2777, 2788
HpyCH4III ACNGT 3 cut(s) 43, 314, 1492
HpyCH4IV ACGT 1 cut(s) 1236
HpyF10VI GCNNNNNNNGC 4 cut(s) 604, 618, 1729, 1984
HpySE526I ACGT 1 cut(s) 1236
Hsp92II CATG 9 cut(s) 493, 1048, 1226, 1589, 1647, 2340, 2516, 2707, 3007
KpnI GGTACC 1 cut(s) 1455
KroI GCCGGC 1 cut(s) 2088
KroNI GCCGGC 1 cut(s) 2090
Ksp22I TGATCA 1 cut(s) 1441
LmnI GCTCC 3 cut(s) 96, 1265, 3024
Lsp1109I GCAGC 5 cut(s) 831, 1164, 1686, 2099, 2757
LweI GCATC 4 cut(s) 1222, 1881, 2356, 3006
MaeI CTAG 1 cut(s) 2060
MaeII ACGT 1 cut(s) 1236
MaeIII GTNAC 5 cut(s) 43, 142, 560, 1124, 2425
MfeI CAATTG 3 cut(s) 408, 1481, 2430
MflI RGATCY 6 cut(s) 237, 881, 970, 1564, 2635, 2736
MhlI GDGCHC 2 cut(s) 1617, 1796
MlsI TGGCCA 1 cut(s) 2266
MluNI TGGCCA 1 cut(s) 2266
MlyI GAGTC 6 cut(s) 251, 641, 929, 2208, 2636, 2946
MmeI TCCRAC 4 cut(s) 160, 1120, 1221, 2595
Mox20I TGGCCA 1 cut(s) 2266
MroNI GCCGGC 1 cut(s) 2088
MroXI GAANNNNTTC 1 cut(s) 3005
MscI TGGCCA 1 cut(s) 2266
Msp20I TGGCCA 1 cut(s) 2266
MspA1I CMGCKG 2 cut(s) 1065, 2112
MspI CCGG 3 cut(s) 710, 1449, 2089
MspR9I CCNGG 4 cut(s) 2263, 2319, 2403, 2459
MunI CAATTG 3 cut(s) 408, 1481, 2430
Mva1269I GAATGC 3 cut(s) 157, 1146, 2699
MvaI CCWGG 4 cut(s) 2263, 2319, 2403, 2459
MwoI GCNNNNNNNGC 4 cut(s) 604, 618, 1729, 1984
NaeI GCCGGC 1 cut(s) 2090
NcoI CCATGG 1 cut(s) 2512
NdeI CATATG 1 cut(s) 2821
NgoMIV GCCGGC 1 cut(s) 2088
NlaIII CATG 9 cut(s) 493, 1048, 1226, 1589, 1647, 2340, 2516, 2707, 3007
NlaIV GGNNCC 8 cut(s) 239, 636, 714, 856, 1069, 1453, 2260, 2805
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 3 cut(s) 493, 1048, 3007
NspV TTCGAA 2 cut(s) 737, 2781
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 2624
PagI TCATGA 1 cut(s) 2703
PciI ACATGT 2 cut(s) 1044, 3003
PcsI WCGNNNNNNNCGW 2 cut(s) 2952, 2961
PctI GAATGC 3 cut(s) 157, 1146, 2699
PdiI GCCGGC 1 cut(s) 2090
PdmI GAANNNNTTC 1 cut(s) 3005
PflMI CCANNNNNTGG 1 cut(s) 1086
PinAI ACCGGT 1 cut(s) 1448
PkrI GCNGC 5 cut(s) 846, 1179, 1701, 2114, 2747
PleI GAGTC 6 cut(s) 251, 641, 929, 2207, 2635, 2945
PpsI GAGTC 6 cut(s) 251, 641, 929, 2207, 2635, 2945
PpuMI RGGWCCY 1 cut(s) 635
PscI ACATGT 2 cut(s) 1044, 3003
PshAI GACNNNNGTC 1 cut(s) 567
PshBI ATTAAT 2 cut(s) 1074, 2889
PsiI TTATAA 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 1796
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 4 cut(s) 2261, 2317, 2401, 2457
PspGI CCWGG 4 cut(s) 2261, 2317, 2401, 2457
PspN4I GGNNCC 8 cut(s) 239, 636, 714, 856, 1069, 1453, 2260, 2805
PspPI GGNCC 7 cut(s) 220, 635, 1292, 1667, 2455, 2804, 2948
PspPPI RGGWCCY 1 cut(s) 635
PspXI VCTCGAGB 1 cut(s) 2624
PsrI GAACNNNNNNTAC 2 cut(s) 2969, 3001
PstNI CAGNNNCTG 1 cut(s) 1393
PsuI RGATCY 6 cut(s) 237, 881, 970, 1564, 2635, 2736
PvuII CAGCTG 1 cut(s) 2112
RsaI GTAC 4 cut(s) 1299, 1453, 2251, 2390
RsaNI GTAC 4 cut(s) 1298, 1452, 2250, 2389
SacI GAGCTC 1 cut(s) 1796
SatI GCNGC 5 cut(s) 845, 1178, 1700, 2113, 2746
Sau96I GGNCC 7 cut(s) 220, 635, 1292, 1667, 2455, 2804, 2948
SchI GAGTC 6 cut(s) 251, 641, 929, 2208, 2636, 2946
ScrFI CCNGG 4 cut(s) 2263, 2319, 2403, 2459
SduI GDGCHC 2 cut(s) 1617, 1796
SfaNI GCATC 4 cut(s) 1222, 1881, 2356, 3006
SfcI CTRYAG 1 cut(s) 815
Sfr274I CTCGAG 1 cut(s) 2624
SfuI TTCGAA 2 cut(s) 737, 2781
SinI GGWCC 4 cut(s) 220, 635, 1667, 2455
SlaI CTCGAG 1 cut(s) 2624
SmlI CTYRAG 6 cut(s) 470, 1120, 1328, 1534, 1907, 2624
SmoI CTYRAG 6 cut(s) 470, 1120, 1328, 1534, 1907, 2624
SphI GCATGC 1 cut(s) 493
SsiI CCGC 3 cut(s) 94, 1065, 2484
SspI AATATT 1 cut(s) 1639
SspMI CTAG 1 cut(s) 2060
SstI GAGCTC 1 cut(s) 1796
StyD4I CCNGG 4 cut(s) 2261, 2317, 2401, 2457
StyI CCWWGG 5 cut(s) 1560, 1653, 2137, 2512, 2932
TaaI ACNGT 3 cut(s) 43, 314, 1492
TaiI ACGT 1 cut(s) 1239
TaqI TCGA 8 cut(s) 162, 682, 737, 1101, 1287, 1704, 2625, 2781
TatI WGTACW 1 cut(s) 2388
TscAI CASTG 9 cut(s) 199, 628, 883, 1497, 1989, 2074, 2274, 2649, 2887
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 5 cut(s) 844, 1177, 1699, 2112, 2745
Tsp45I GTSAC 1 cut(s) 560
TspGWI ACGGA 6 cut(s) 250, 664, 952, 2011, 2244, 2807
TspRI CASTG 9 cut(s) 199, 628, 883, 1497, 1989, 2074, 2274, 2649, 2887
Van91I CCANNNNNTGG 1 cut(s) 1086
VpaK11BI GGWCC 4 cut(s) 220, 635, 1667, 2455
VspI ATTAAT 2 cut(s) 1074, 2889
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 8 cut(s) 866, 1581, 1838, 2030, 2222, 2507, 2675, 2872
XbaI TCTAGA 1 cut(s) 2059
XceI RCATGY 3 cut(s) 493, 1048, 3007
XcmI CCANNNNNNNNNTGG 1 cut(s) 1605
XhoI CTCGAG 1 cut(s) 2624
XmnI GAANNNNTTC 1 cut(s) 3005
XspI CTAG 1 cut(s) 2060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.